Wall clock time and date at job start Wed Apr 1 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 111.00089 * 2 1 4 4 C 1.52993 * 109.46747 * 293.94894 * 3 2 1 5 5 C 1.53003 * 109.47265 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47537 * 180.02562 * 5 4 3 7 7 C 1.35086 * 126.01098 * 274.72276 * 6 5 4 8 8 C 1.40853 * 107.84772 * 179.84705 * 7 6 5 9 9 C 1.48419 * 126.03931 * 180.12670 * 8 7 6 10 10 C 1.39335 * 120.09143 * 0.04046 * 9 8 7 11 11 C 1.37985 * 119.89917 * 179.73813 * 10 9 8 12 12 C 1.38538 * 120.09847 * 0.51580 * 11 10 9 13 13 F 1.35102 * 119.91007 * 179.74026 * 12 11 10 14 14 C 1.38548 * 120.18648 * 359.75602 * 12 11 10 15 15 C 1.37985 * 120.09518 * 359.97438 * 14 12 11 16 16 N 1.31621 * 107.92223 * 0.41265 * 8 7 6 17 17 N 1.35033 * 126.01090 * 95.02337 * 6 5 4 18 18 H 0.97002 * 125.93020 * 0.04261 * 17 6 5 19 19 C 1.46903 * 110.99859 * 123.95067 * 2 1 3 20 20 C 1.53001 * 109.47320 * 163.88535 * 19 2 1 21 21 H 1.09000 * 109.46901 * 54.77113 * 20 19 2 22 22 O 1.42904 * 109.47069 * 294.77882 * 20 19 2 23 23 C 1.50697 * 109.47260 * 174.77836 * 20 19 2 24 24 H 1.08002 * 119.99943 * 359.97438 * 23 20 19 25 25 C 1.37878 * 119.99831 * 179.97438 * 23 20 19 26 26 N 1.31516 * 119.99999 * 179.97438 * 25 23 20 27 27 Si 1.86798 * 120.00141 * 359.97438 * 25 23 20 28 28 H 1.48504 * 109.47093 * 90.00104 * 27 25 23 29 29 H 1.48493 * 109.47162 * 209.99760 * 27 25 23 30 30 H 1.48499 * 109.47269 * 330.00020 * 27 25 23 31 31 H 1.08999 * 109.46998 * 65.81130 * 1 2 3 32 32 H 1.09003 * 109.47007 * 185.81030 * 1 2 3 33 33 H 1.09002 * 109.46841 * 305.81035 * 1 2 3 34 34 H 1.08991 * 109.47062 * 53.95345 * 3 2 1 35 35 H 1.09001 * 109.47080 * 173.95431 * 3 2 1 36 36 H 1.08999 * 109.47896 * 300.00285 * 4 3 2 37 37 H 1.09003 * 109.47619 * 60.00310 * 4 3 2 38 38 H 1.09000 * 109.47382 * 300.00654 * 5 4 3 39 39 H 1.09001 * 109.46801 * 60.00391 * 5 4 3 40 40 H 1.07996 * 126.07825 * 359.97438 * 7 6 5 41 41 H 1.07998 * 120.05003 * 359.97438 * 10 9 8 42 42 H 1.08004 * 119.95117 * 180.24701 * 11 10 9 43 43 H 1.08002 * 119.95064 * 179.97438 * 14 12 11 44 44 H 1.07995 * 120.04476 * 180.02562 * 15 14 12 45 45 H 1.08997 * 109.47107 * 283.88262 * 19 2 1 46 46 H 1.09001 * 109.47213 * 43.88400 * 19 2 1 47 47 H 0.96705 * 113.99892 * 299.99952 * 22 20 19 48 48 H 0.96996 * 120.00000 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1793 3.4859 -1.3181 6 6 1.8204 4.1618 -2.6164 7 6 2.5186 4.0869 -3.7703 8 6 1.8413 4.8574 -4.7355 9 6 2.2576 5.0517 -6.1468 10 6 3.4159 4.4417 -6.6238 11 6 3.7963 4.6207 -7.9381 12 6 3.0342 5.4141 -8.7801 13 9 3.4130 5.5909 -10.0648 14 6 1.8847 6.0270 -8.3083 15 6 1.4940 5.8490 -6.9969 16 7 0.7774 5.3798 -4.1630 17 7 0.7472 4.9533 -2.8292 18 1 0.0728 5.1865 -2.1722 19 6 1.9954 -0.7659 1.1377 20 6 3.4720 -1.0867 0.8971 21 1 4.0171 -0.1633 0.7012 22 8 3.5928 -1.9589 -0.2284 23 6 4.0453 -1.7593 2.1177 24 1 3.4192 -1.9397 2.9791 25 6 5.3690 -2.1445 2.1348 26 7 5.8695 -2.7311 3.2002 27 14 6.4517 -1.8333 0.6447 28 1 7.0956 -0.5010 0.7703 29 1 7.4985 -2.8834 0.5654 30 1 5.6216 -1.8678 -0.5862 31 1 -0.3633 0.4211 -0.9374 32 1 -0.3633 -1.0224 0.1040 33 1 -0.3633 0.6013 0.8334 34 1 1.5612 1.9273 0.8308 35 1 3.0798 1.3444 0.1082 36 1 2.0659 1.5014 -2.1492 37 1 0.5473 2.0844 -1.4267 38 1 1.7447 4.0417 -0.4873 39 1 3.2636 3.4593 -1.2097 40 1 3.4325 3.5329 -3.9259 41 1 4.0131 3.8267 -5.9669 42 1 4.6919 4.1450 -8.3098 43 1 1.2936 6.6451 -8.9679 44 1 0.5977 6.3268 -6.6301 45 1 1.8954 -0.1772 2.0495 46 1 1.4341 -1.6945 1.2414 47 1 3.1309 -2.8021 -0.1239 48 1 6.8009 -3.0018 3.2123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929455401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:36 Heat of formation + Delta-G solvation = 0.382101 kcal Electronic energy + Delta-G solvation = -28788.774407 eV Core-core repulsion = 24566.483891 eV Total energy + Delta-G solvation = -4222.290516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.23461 -41.55053 -39.13479 -37.97343 -35.64160 -34.14216 -32.65376 -32.23468 -31.61948 -30.03737 -29.59961 -28.92182 -26.63670 -25.71333 -23.80461 -23.47800 -22.87193 -21.23368 -20.55599 -20.41265 -19.99975 -18.03860 -17.60854 -17.27447 -16.38768 -16.11463 -15.93171 -15.54160 -15.20344 -15.16647 -14.73109 -14.66338 -14.61809 -14.19608 -13.98544 -13.73507 -13.65230 -13.41562 -13.33933 -13.06622 -12.86227 -12.67593 -12.39265 -12.24905 -11.97863 -11.69884 -11.50141 -11.46397 -11.30194 -10.95875 -10.90474 -10.77056 -10.58377 -10.34327 -10.23166 -9.88004 -9.51192 -9.03302 -8.91548 -8.62909 -8.53995 -8.27671 -7.81580 -6.14061 -4.25571 0.44141 0.86717 1.67734 2.49123 2.52006 3.38224 3.44792 3.48562 3.76432 3.87889 4.02463 4.21513 4.30349 4.48530 4.51053 4.53491 4.70212 4.85905 4.88377 5.10928 5.17176 5.21156 5.24717 5.33506 5.43719 5.49339 5.52029 5.55160 5.58449 5.63412 5.72687 5.74395 5.77660 5.87117 5.91229 5.97513 6.02915 6.10670 6.22996 6.26123 6.31448 6.34695 6.47971 6.58201 6.98661 7.23766 7.34436 7.35509 7.53851 7.67937 8.28209 8.82491 9.10821 9.51044 10.96519 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.001958 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.993929 B =14299.765223 C =15829.226857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.054 3.946 4 C -0.108 4.108 5 C -0.062 4.062 6 C 0.106 3.894 7 C -0.256 4.256 8 C 0.113 3.887 9 C -0.022 4.022 10 C -0.065 4.065 11 C -0.153 4.153 12 C 0.102 3.898 13 F -0.140 7.140 14 C -0.156 4.156 15 C -0.065 4.065 16 N -0.287 5.287 17 N -0.469 5.469 18 H 0.439 0.561 19 C 0.040 3.960 20 C 0.203 3.797 21 H 0.053 0.947 22 O -0.571 6.571 23 C -0.567 4.567 24 H 0.070 0.930 25 C 0.083 3.917 26 N -0.894 5.894 27 Si 0.870 3.130 28 H -0.288 1.288 29 H -0.296 1.296 30 H -0.214 1.214 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.028 0.972 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.033 0.967 46 H 0.068 0.932 47 H 0.353 0.647 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 17.898 -18.132 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.258 5.258 3 C -0.074 4.074 4 C -0.146 4.146 5 C -0.102 4.102 6 C -0.023 4.023 7 C -0.285 4.285 8 C -0.051 4.051 9 C -0.024 4.024 10 C -0.084 4.084 11 C -0.172 4.172 12 C 0.082 3.918 13 F -0.118 7.118 14 C -0.175 4.175 15 C -0.085 4.085 16 N -0.110 5.110 17 N -0.178 5.178 18 H 0.283 0.717 19 C -0.088 4.088 20 C 0.145 3.855 21 H 0.070 0.930 22 O -0.376 6.376 23 C -0.605 4.605 24 H 0.088 0.912 25 C -0.121 4.121 26 N -0.531 5.531 27 Si 0.697 3.303 28 H -0.215 1.215 29 H -0.223 1.223 30 H -0.136 1.136 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.170 0.830 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.199 0.801 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.381 18.828 -18.896 28.623 hybrid contribution 0.389 -0.286 0.890 1.012 sum -9.992 18.542 -18.006 27.710 Atomic orbital electron populations 1.22401 0.88902 1.01312 0.99780 1.61995 1.06264 1.12637 1.44943 1.22137 1.01378 0.88619 0.95267 1.21558 1.00683 0.92926 0.99451 1.20367 1.03315 0.95641 0.90864 1.21095 0.89005 0.94342 0.97808 1.21222 1.05346 1.09985 0.91899 1.20520 0.93626 0.97511 0.93397 1.17868 0.95681 0.99206 0.89623 1.21062 0.95093 0.97619 0.94663 1.21092 1.01424 1.00788 0.93848 1.17843 0.95522 0.99305 0.79121 1.91509 1.91018 1.93930 1.35379 1.21092 0.96846 1.02566 0.96959 1.21111 0.99220 0.96195 0.91925 1.77443 1.20915 1.23067 0.89614 1.46259 1.22213 1.39449 1.09884 0.71720 1.22874 0.99482 0.96731 0.89692 1.19702 0.89502 0.90776 0.85519 0.92969 1.86669 1.76374 1.30592 1.43969 1.21532 0.96666 1.41404 1.00905 0.91201 1.24999 0.98037 0.93019 0.96090 1.69960 1.14683 1.39455 1.28985 0.87030 0.79463 0.77148 0.86675 1.21484 1.22306 1.13617 0.92082 0.91812 0.96477 0.95417 0.89961 0.90139 0.92238 0.90578 0.88467 0.83045 0.84118 0.84171 0.84449 0.84337 0.94849 0.91375 0.80110 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.24 60.07 0.55 0.88 16 2 N -0.53 -8.50 4.67 -242.92 -1.13 -9.63 16 3 C 0.05 0.74 4.81 -3.83 -0.02 0.72 16 4 C -0.11 -1.17 5.12 -26.73 -0.14 -1.31 16 5 C -0.06 -0.54 5.76 -27.88 -0.16 -0.70 16 6 C 0.11 1.02 6.45 -82.31 -0.53 0.49 16 7 C -0.26 -2.65 10.08 -39.71 -0.40 -3.05 16 8 C 0.11 1.24 6.99 -82.77 -0.58 0.66 16 9 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 10 C -0.06 -0.53 9.57 -39.27 -0.38 -0.91 16 11 C -0.15 -1.20 10.01 -39.56 -0.40 -1.60 16 12 C 0.10 0.88 7.30 -39.36 -0.29 0.60 16 13 F -0.14 -1.31 17.26 2.25 0.04 -1.27 16 14 C -0.16 -1.24 10.01 -39.56 -0.40 -1.63 16 15 C -0.07 -0.57 9.69 -39.27 -0.38 -0.95 16 16 N -0.29 -3.25 12.36 33.43 0.41 -2.84 16 17 N -0.47 -4.39 7.35 33.45 0.25 -4.14 16 18 H 0.44 2.85 8.96 -182.62 -1.64 1.21 16 19 C 0.04 0.74 4.55 -3.82 -0.02 0.73 16 20 C 0.20 4.57 2.37 -27.88 -0.07 4.50 16 21 H 0.05 1.21 5.88 -51.93 -0.31 0.90 16 22 O -0.57 -12.76 10.09 -35.23 -0.36 -13.12 16 23 C -0.57 -15.36 9.34 -34.44 -0.32 -15.69 16 24 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 25 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 26 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 27 Si 0.87 21.42 26.99 -169.99 -4.59 16.83 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 30 H -0.21 -5.15 5.30 56.52 0.30 -4.85 16 31 H 0.06 0.71 6.76 -51.93 -0.35 0.36 16 32 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.02 0.21 8.06 -51.93 -0.42 -0.21 16 34 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.08 1.26 6.34 -51.93 -0.33 0.93 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.15 1.35 7.33 -52.49 -0.38 0.96 16 41 H 0.14 0.94 7.03 -52.49 -0.37 0.57 16 42 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.14 1.12 7.85 -52.49 -0.41 0.71 16 45 H 0.03 0.64 8.05 -51.93 -0.42 0.22 16 46 H 0.07 1.26 7.81 -51.93 -0.41 0.86 16 47 H 0.35 7.09 9.04 45.56 0.41 7.50 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -32.85 397.40 -10.41 -43.26 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.56 Total: 6.91 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -4.23 Total: -15.84 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.30 Total: -42.75 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.36 Total: -13.12 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.85 -10.41 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929455401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.640 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds