Wall clock time and date at job start Wed Apr 1 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 111.00089 * 2 1 4 4 C 1.52993 * 109.46747 * 293.94894 * 3 2 1 5 5 C 1.53003 * 109.47265 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47537 * 180.02562 * 5 4 3 7 7 C 1.35086 * 126.01098 * 274.72276 * 6 5 4 8 8 C 1.40853 * 107.84772 * 179.84705 * 7 6 5 9 9 C 1.48419 * 126.03931 * 180.12670 * 8 7 6 10 10 C 1.39335 * 120.09143 * 0.04046 * 9 8 7 11 11 C 1.37985 * 119.89917 * 179.73813 * 10 9 8 12 12 C 1.38538 * 120.09847 * 0.51580 * 11 10 9 13 13 F 1.35102 * 119.91007 * 179.74026 * 12 11 10 14 14 C 1.38548 * 120.18648 * 359.75602 * 12 11 10 15 15 C 1.37985 * 120.09518 * 359.97438 * 14 12 11 16 16 N 1.31621 * 107.92223 * 0.41265 * 8 7 6 17 17 N 1.35033 * 126.01090 * 95.02337 * 6 5 4 18 18 H 0.97002 * 125.93020 * 0.04261 * 17 6 5 19 19 C 1.46903 * 110.99859 * 123.95067 * 2 1 3 20 20 C 1.53001 * 109.47320 * 163.88535 * 19 2 1 21 21 H 1.09000 * 109.46901 * 54.77113 * 20 19 2 22 22 O 1.42904 * 109.47069 * 294.77882 * 20 19 2 23 23 C 1.50697 * 109.47260 * 174.77836 * 20 19 2 24 24 H 1.08002 * 119.99943 * 359.97438 * 23 20 19 25 25 C 1.37878 * 119.99831 * 179.97438 * 23 20 19 26 26 N 1.31516 * 119.99999 * 179.97438 * 25 23 20 27 27 Si 1.86798 * 120.00141 * 359.97438 * 25 23 20 28 28 H 1.48504 * 109.47093 * 90.00104 * 27 25 23 29 29 H 1.48493 * 109.47162 * 209.99760 * 27 25 23 30 30 H 1.48499 * 109.47269 * 330.00020 * 27 25 23 31 31 H 1.08999 * 109.46998 * 65.81130 * 1 2 3 32 32 H 1.09003 * 109.47007 * 185.81030 * 1 2 3 33 33 H 1.09002 * 109.46841 * 305.81035 * 1 2 3 34 34 H 1.08991 * 109.47062 * 53.95345 * 3 2 1 35 35 H 1.09001 * 109.47080 * 173.95431 * 3 2 1 36 36 H 1.08999 * 109.47896 * 300.00285 * 4 3 2 37 37 H 1.09003 * 109.47619 * 60.00310 * 4 3 2 38 38 H 1.09000 * 109.47382 * 300.00654 * 5 4 3 39 39 H 1.09001 * 109.46801 * 60.00391 * 5 4 3 40 40 H 1.07996 * 126.07825 * 359.97438 * 7 6 5 41 41 H 1.07998 * 120.05003 * 359.97438 * 10 9 8 42 42 H 1.08004 * 119.95117 * 180.24701 * 11 10 9 43 43 H 1.08002 * 119.95064 * 179.97438 * 14 12 11 44 44 H 1.07995 * 120.04476 * 180.02562 * 15 14 12 45 45 H 1.08997 * 109.47107 * 283.88262 * 19 2 1 46 46 H 1.09001 * 109.47213 * 43.88400 * 19 2 1 47 47 H 0.96705 * 113.99892 * 299.99952 * 22 20 19 48 48 H 0.96996 * 120.00000 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1793 3.4859 -1.3181 6 6 1.8204 4.1618 -2.6164 7 6 2.5186 4.0869 -3.7703 8 6 1.8413 4.8574 -4.7355 9 6 2.2576 5.0517 -6.1468 10 6 3.4159 4.4417 -6.6238 11 6 3.7963 4.6207 -7.9381 12 6 3.0342 5.4141 -8.7801 13 9 3.4130 5.5909 -10.0648 14 6 1.8847 6.0270 -8.3083 15 6 1.4940 5.8490 -6.9969 16 7 0.7774 5.3798 -4.1630 17 7 0.7472 4.9533 -2.8292 18 1 0.0728 5.1865 -2.1722 19 6 1.9954 -0.7659 1.1377 20 6 3.4720 -1.0867 0.8971 21 1 4.0171 -0.1633 0.7012 22 8 3.5928 -1.9589 -0.2284 23 6 4.0453 -1.7593 2.1177 24 1 3.4192 -1.9397 2.9791 25 6 5.3690 -2.1445 2.1348 26 7 5.8695 -2.7311 3.2002 27 14 6.4517 -1.8333 0.6447 28 1 7.0956 -0.5010 0.7703 29 1 7.4985 -2.8834 0.5654 30 1 5.6216 -1.8678 -0.5862 31 1 -0.3633 0.4211 -0.9374 32 1 -0.3633 -1.0224 0.1040 33 1 -0.3633 0.6013 0.8334 34 1 1.5612 1.9273 0.8308 35 1 3.0798 1.3444 0.1082 36 1 2.0659 1.5014 -2.1492 37 1 0.5473 2.0844 -1.4267 38 1 1.7447 4.0417 -0.4873 39 1 3.2636 3.4593 -1.2097 40 1 3.4325 3.5329 -3.9259 41 1 4.0131 3.8267 -5.9669 42 1 4.6919 4.1450 -8.3098 43 1 1.2936 6.6451 -8.9679 44 1 0.5977 6.3268 -6.6301 45 1 1.8954 -0.1772 2.0495 46 1 1.4341 -1.6945 1.2414 47 1 3.1309 -2.8021 -0.1239 48 1 6.8009 -3.0018 3.2123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929455401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:33 Heat of formation + Delta-G solvation = -21.760922 kcal Electronic energy + Delta-G solvation = -28789.734601 eV Core-core repulsion = 24566.483891 eV Total energy + Delta-G solvation = -4223.250709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -49.91385 -42.28077 -39.77139 -39.30253 -37.18341 -35.09982 -34.37036 -33.39052 -32.24235 -31.09615 -30.41054 -30.26943 -27.72593 -27.21237 -24.56703 -24.35109 -23.83408 -22.59903 -21.39557 -21.27155 -21.11863 -19.31460 -18.69002 -18.31082 -17.08383 -16.83470 -16.78217 -16.64376 -16.60588 -16.41713 -16.32607 -15.82454 -15.32316 -15.26143 -15.00164 -14.92358 -14.63442 -14.48464 -14.35338 -14.18566 -13.88082 -13.54110 -13.48788 -13.17051 -13.09202 -12.96877 -12.78290 -12.76602 -12.47970 -12.34458 -12.14686 -11.93418 -11.78625 -11.59632 -11.40133 -10.98707 -10.94740 -10.76993 -10.11641 -10.08606 -9.67774 -9.22561 -9.09292 -8.32688 -6.47328 -0.23349 0.26167 0.94186 1.42818 1.49244 1.76839 1.80232 1.86059 2.47541 2.78243 3.03779 3.06816 3.24531 3.38250 3.60084 3.81059 3.93709 3.98921 4.05256 4.14605 4.20207 4.28271 4.34679 4.40691 4.46719 4.51937 4.53808 4.64693 4.69185 4.72223 4.81256 4.89573 4.92627 4.97075 5.00774 5.03832 5.05790 5.12054 5.20092 5.28099 5.37227 5.48887 5.51112 5.53393 5.59988 5.85671 6.10718 6.19356 6.31032 6.36139 6.62711 6.65883 7.26151 7.41909 8.81384 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.001958 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.993929 B =14299.765223 C =15829.226857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.052 3.948 4 C -0.094 4.094 5 C -0.054 4.054 6 C 0.108 3.892 7 C -0.271 4.271 8 C 0.104 3.896 9 C -0.038 4.038 10 C -0.066 4.066 11 C -0.152 4.152 12 C 0.089 3.911 13 F -0.145 7.145 14 C -0.154 4.154 15 C -0.071 4.071 16 N -0.310 5.310 17 N -0.463 5.463 18 H 0.449 0.551 19 C 0.053 3.947 20 C 0.210 3.790 21 H 0.052 0.948 22 O -0.574 6.574 23 C -0.567 4.567 24 H 0.034 0.966 25 C 0.027 3.973 26 N -0.941 5.941 27 Si 0.938 3.062 28 H -0.283 1.283 29 H -0.300 1.300 30 H -0.203 1.203 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.364 0.636 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 18.974 -19.746 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.076 4.076 4 C -0.133 4.133 5 C -0.094 4.094 6 C -0.021 4.021 7 C -0.300 4.300 8 C -0.059 4.059 9 C -0.040 4.040 10 C -0.085 4.085 11 C -0.171 4.171 12 C 0.069 3.931 13 F -0.124 7.124 14 C -0.173 4.173 15 C -0.090 4.090 16 N -0.135 5.135 17 N -0.174 5.174 18 H 0.296 0.704 19 C -0.075 4.075 20 C 0.152 3.848 21 H 0.069 0.931 22 O -0.380 6.380 23 C -0.605 4.605 24 H 0.052 0.948 25 C -0.173 4.173 26 N -0.580 5.580 27 Si 0.762 3.238 28 H -0.209 1.209 29 H -0.227 1.227 30 H -0.125 1.125 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.179 0.821 41 H 0.173 0.827 42 H 0.176 0.824 43 H 0.173 0.827 44 H 0.159 0.841 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.211 0.789 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.949 19.919 -20.514 30.617 hybrid contribution 0.473 -0.628 1.437 1.638 sum -10.476 19.290 -19.076 29.082 Atomic orbital electron populations 1.22443 0.86839 1.01797 1.01123 1.61928 1.08149 1.13753 1.43130 1.22194 1.00275 0.87872 0.97259 1.21394 1.01144 0.93598 0.97114 1.20308 1.03585 0.94402 0.91075 1.21190 0.88865 0.94135 0.97879 1.21487 1.06031 1.10351 0.92135 1.20771 0.93615 0.97507 0.94048 1.18049 0.96509 1.00043 0.89440 1.21231 0.94801 0.97511 0.94996 1.21310 1.01822 1.00344 0.93582 1.18051 0.96060 0.99898 0.79061 1.91494 1.91111 1.94037 1.35776 1.21265 0.96760 1.02377 0.96897 1.21181 0.99367 0.96305 0.92181 1.77394 1.21534 1.23978 0.90554 1.46295 1.22417 1.39071 1.09599 0.70399 1.22521 0.97151 0.97289 0.90586 1.19508 0.91770 0.90034 0.83477 0.93082 1.86600 1.76845 1.31299 1.43261 1.21887 0.96275 1.40774 1.01568 0.94751 1.25879 0.99684 0.92992 0.98726 1.70090 1.15192 1.41508 1.31240 0.85991 0.77461 0.76863 0.83449 1.20903 1.22750 1.12450 0.90258 0.91799 0.95541 0.94308 0.91783 0.91598 0.91349 0.88607 0.88157 0.82050 0.82739 0.82406 0.82741 0.84149 0.95675 0.91468 0.78885 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.24 127.69 1.18 1.78 16 2 N -0.55 -16.19 4.67 -922.45 -4.31 -20.50 16 3 C 0.05 1.31 4.81 86.30 0.41 1.72 16 4 C -0.09 -1.80 5.12 30.59 0.16 -1.64 16 5 C -0.05 -0.80 5.76 29.85 0.17 -0.63 16 6 C 0.11 1.86 6.45 41.34 0.27 2.13 16 7 C -0.27 -5.20 10.08 22.18 0.22 -4.97 16 8 C 0.10 2.17 6.99 42.53 0.30 2.47 16 9 C -0.04 -0.71 5.88 -20.04 -0.12 -0.82 16 10 C -0.07 -1.00 9.57 22.47 0.22 -0.79 16 11 C -0.15 -2.18 10.01 22.28 0.22 -1.96 16 12 C 0.09 1.45 7.30 22.42 0.16 1.61 16 13 F -0.15 -2.58 17.26 44.97 0.78 -1.80 16 14 C -0.15 -2.30 10.01 22.28 0.22 -2.07 16 15 C -0.07 -1.19 9.69 22.47 0.22 -0.97 16 16 N -0.31 -6.71 12.36 -48.15 -0.60 -7.30 16 17 N -0.46 -7.83 7.35 -48.09 -0.35 -8.18 16 18 H 0.45 4.92 8.96 -213.34 -1.91 3.01 16 19 C 0.05 1.92 4.55 86.30 0.39 2.32 16 20 C 0.21 9.27 2.37 29.85 0.07 9.34 16 21 H 0.05 2.30 5.88 -2.39 -0.01 2.28 16 22 O -0.57 -24.57 10.09 -148.98 -1.50 -26.08 16 23 C -0.57 -31.02 9.34 25.60 0.24 -30.78 16 24 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 25 C 0.03 1.52 5.47 84.65 0.46 1.98 16 26 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 27 Si 0.94 44.22 26.99 68.60 1.85 46.07 16 28 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 29 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 30 H -0.20 -9.11 5.30 99.48 0.53 -8.59 16 31 H 0.08 1.58 6.76 -2.39 -0.02 1.56 16 32 H 0.06 1.49 7.87 -2.39 -0.02 1.47 16 33 H 0.03 0.57 8.06 -2.39 -0.02 0.55 16 34 H 0.04 0.90 8.06 -2.39 -0.02 0.88 16 35 H 0.06 1.85 6.34 -2.39 -0.02 1.84 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.20 6.68 -2.39 -0.02 1.18 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.16 2.60 7.33 -2.91 -0.02 2.58 16 41 H 0.15 1.81 7.03 -2.91 -0.02 1.79 16 42 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.14 2.21 7.85 -2.91 -0.02 2.19 16 45 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16 46 H 0.07 2.43 7.81 -2.39 -0.02 2.42 16 47 H 0.36 14.00 9.04 -74.05 -0.67 13.33 16 48 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -70.35 397.40 -0.79 -71.14 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -1.76 Total: 25.39 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.80 Total: -21.28 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -4.96 Total: -93.44 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.50 Total: -26.08 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.85 Total: 46.07 kcal Total: -70.35 -0.79 -71.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929455401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.377 kcal (2) G-P(sol) polarization free energy of solvation -70.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds