Wall clock time and date at job start Wed Apr 1 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00189 * 2 1 4 4 C 1.53000 * 109.47466 * 293.95692 * 3 2 1 5 5 C 1.52992 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 3 7 7 C 1.35079 * 126.01452 * 84.99650 * 6 5 4 8 8 C 1.40841 * 107.85286 * 180.02562 * 7 6 5 9 9 C 1.48423 * 126.04381 * 180.02562 * 8 7 6 10 10 C 1.39352 * 120.10861 * 180.02562 * 9 8 7 11 11 C 1.38014 * 119.92810 * 179.97438 * 10 9 8 12 12 C 1.38304 * 120.14682 * 0.02562 * 11 10 9 13 13 C 1.38526 * 120.21683 * 359.97438 * 12 11 10 14 14 F 1.35098 * 119.96562 * 180.02562 * 13 12 11 15 15 C 1.38272 * 120.06434 * 359.74643 * 13 12 11 16 16 N 1.31625 * 107.92452 * 0.02562 * 8 7 6 17 17 N 1.35040 * 126.00803 * 264.68804 * 6 5 4 18 18 H 0.97006 * 125.92667 * 359.97438 * 17 6 5 19 19 C 1.46896 * 111.00277 * 123.95796 * 2 1 3 20 20 C 1.52999 * 109.47180 * 164.08188 * 19 2 1 21 21 H 1.09006 * 109.47321 * 58.38705 * 20 19 2 22 22 O 1.42899 * 109.47405 * 298.37952 * 20 19 2 23 23 C 1.50706 * 109.46979 * 178.38358 * 20 19 2 24 24 H 1.08000 * 120.00016 * 359.97438 * 23 20 19 25 25 C 1.37881 * 120.00116 * 180.02562 * 23 20 19 26 26 N 1.31516 * 119.99470 * 359.97438 * 25 23 20 27 27 Si 1.86796 * 120.00041 * 179.97438 * 25 23 20 28 28 H 1.48495 * 109.47152 * 89.99596 * 27 25 23 29 29 H 1.48506 * 109.46910 * 209.99382 * 27 25 23 30 30 H 1.48501 * 109.47262 * 329.99424 * 27 25 23 31 31 H 1.09002 * 109.47103 * 301.97837 * 1 2 3 32 32 H 1.09003 * 109.47324 * 61.98395 * 1 2 3 33 33 H 1.09007 * 109.47239 * 181.98195 * 1 2 3 34 34 H 1.09004 * 109.47117 * 53.95283 * 3 2 1 35 35 H 1.08995 * 109.47507 * 173.95515 * 3 2 1 36 36 H 1.08999 * 109.47274 * 300.00154 * 4 3 2 37 37 H 1.09005 * 109.46812 * 59.99463 * 4 3 2 38 38 H 1.09004 * 109.47305 * 299.99689 * 5 4 3 39 39 H 1.08995 * 109.47347 * 59.99938 * 5 4 3 40 40 H 1.08007 * 126.07623 * 0.02562 * 7 6 5 41 41 H 1.07993 * 120.03888 * 359.95649 * 10 9 8 42 42 H 1.07999 * 119.92353 * 180.02562 * 11 10 9 43 43 H 1.07995 * 119.89429 * 180.02562 * 12 11 10 44 44 H 1.07997 * 120.07372 * 180.27002 * 15 13 12 45 45 H 1.08996 * 109.46929 * 284.07992 * 19 2 1 46 46 H 1.08998 * 109.47218 * 44.08142 * 19 2 1 47 47 H 0.96699 * 113.99934 * 300.00240 * 22 20 19 48 48 H 0.96999 * 119.99706 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1792 3.4860 -1.3179 6 6 1.8201 4.1620 -2.6161 7 6 0.6580 4.7950 -2.8871 8 6 0.7298 5.2836 -4.2061 9 6 -0.3299 6.0437 -4.9147 10 6 -0.1269 6.4692 -6.2260 11 6 -1.1150 7.1753 -6.8816 12 6 -2.3060 7.4621 -6.2398 13 6 -2.5143 7.0421 -4.9362 14 9 -3.6798 7.3246 -4.3143 15 6 -1.5326 6.3291 -4.2730 16 7 1.9027 4.9469 -4.6995 17 7 2.6059 4.2464 -3.7111 18 1 3.5008 3.8825 -3.7990 19 6 1.9954 -0.7660 1.1375 20 6 3.4732 -1.0824 0.8990 21 1 4.0275 -0.1528 0.7690 22 8 3.6051 -1.8841 -0.2765 23 6 4.0236 -1.8339 2.0838 24 1 3.3834 -2.0625 2.9231 25 6 5.3446 -2.2286 2.0968 26 7 6.1242 -1.9497 1.0750 27 14 6.0269 -3.1593 3.5656 28 1 5.8513 -4.6183 3.3521 29 1 7.4717 -2.8519 3.7188 30 1 5.3003 -2.7477 4.7935 31 1 -0.3633 0.5443 0.8717 32 1 -0.3634 0.4827 -0.9072 33 1 -0.3634 -1.0271 0.0355 34 1 1.5611 1.9273 0.8309 35 1 3.0797 1.3444 0.1082 36 1 2.0657 1.5016 -2.1492 37 1 0.5471 2.0845 -1.4264 38 1 1.7445 4.0417 -0.4870 39 1 3.2634 3.4594 -1.2095 40 1 -0.1778 4.9067 -2.2121 41 1 0.8027 6.2468 -6.7287 42 1 -0.9578 7.5046 -7.8981 43 1 -3.0766 8.0146 -6.7568 44 1 -1.6965 5.9978 -3.2583 45 1 1.8923 -0.1788 2.0499 46 1 1.4365 -1.6963 1.2390 47 1 3.1362 -2.7286 -0.2313 48 1 7.0535 -2.2277 1.0839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929613202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:42 Heat of formation + Delta-G solvation = -4.650318 kcal Electronic energy + Delta-G solvation = -28694.780080 eV Core-core repulsion = 24472.271342 eV Total energy + Delta-G solvation = -4222.508738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.20715 -41.50633 -39.11978 -37.78031 -35.31472 -34.02658 -32.81992 -32.08718 -31.06633 -29.95564 -29.83563 -28.61693 -26.51186 -25.47408 -24.11749 -23.29731 -22.75314 -21.25553 -20.52621 -20.40831 -19.87986 -17.66091 -17.41756 -16.97602 -16.52409 -16.33050 -15.91947 -15.37275 -15.13055 -15.05447 -14.64684 -14.63306 -14.45329 -14.22941 -13.99615 -13.73934 -13.58901 -13.43843 -13.18536 -12.84911 -12.75857 -12.45239 -12.20113 -11.99462 -11.83969 -11.60273 -11.40608 -11.36456 -11.05229 -10.95018 -10.84244 -10.76486 -10.57073 -10.38626 -10.31509 -10.03764 -9.21318 -9.01209 -8.88960 -8.65552 -8.59055 -8.13599 -7.64496 -6.02595 -4.20909 0.47399 0.82889 1.74404 2.52909 2.58153 3.25454 3.32686 3.34884 3.45013 3.79168 4.11823 4.26677 4.32869 4.45747 4.58610 4.63378 4.78974 4.81296 4.95551 5.06041 5.25079 5.27010 5.34170 5.36157 5.46880 5.48618 5.61651 5.67847 5.69054 5.72901 5.74604 5.80955 5.90023 5.93034 6.05515 6.13273 6.16044 6.23584 6.33187 6.35620 6.43855 6.49009 6.56058 6.79841 7.06169 7.40441 7.51182 7.59043 7.76210 7.87034 8.18870 8.83236 9.44924 9.61340 11.01433 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022498 B = 0.001642 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.233094 B =17048.265463 C =17800.320028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.532 5.532 3 C 0.056 3.944 4 C -0.107 4.107 5 C -0.063 4.063 6 C 0.109 3.891 7 C -0.259 4.259 8 C 0.106 3.894 9 C 0.021 3.979 10 C -0.104 4.104 11 C -0.092 4.092 12 C -0.151 4.151 13 C 0.098 3.902 14 F -0.139 7.139 15 C -0.132 4.132 16 N -0.281 5.281 17 N -0.463 5.463 18 H 0.442 0.558 19 C 0.030 3.970 20 C 0.238 3.762 21 H 0.053 0.947 22 O -0.555 6.555 23 C -0.575 4.575 24 H 0.054 0.946 25 C 0.080 3.920 26 N -0.858 5.858 27 Si 0.888 3.112 28 H -0.279 1.279 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.027 0.973 46 H 0.062 0.938 47 H 0.342 0.658 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.595 18.527 -12.236 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.256 5.256 3 C -0.072 4.072 4 C -0.146 4.146 5 C -0.102 4.102 6 C -0.019 4.019 7 C -0.288 4.288 8 C -0.058 4.058 9 C 0.019 3.981 10 C -0.124 4.124 11 C -0.110 4.110 12 C -0.170 4.170 13 C 0.079 3.921 14 F -0.117 7.117 15 C -0.152 4.152 16 N -0.104 5.104 17 N -0.172 5.172 18 H 0.287 0.713 19 C -0.097 4.097 20 C 0.180 3.820 21 H 0.071 0.929 22 O -0.356 6.356 23 C -0.614 4.614 24 H 0.072 0.928 25 C -0.126 4.126 26 N -0.494 5.494 27 Si 0.716 3.284 28 H -0.205 1.205 29 H -0.211 1.211 30 H -0.199 1.199 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.185 0.815 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.139 18.856 -13.907 26.862 hybrid contribution -0.467 -0.821 2.669 2.831 sum -13.606 18.035 -11.237 25.232 Atomic orbital electron populations 1.22416 0.89188 1.01283 0.99628 1.61973 1.05956 1.12630 1.44997 1.22104 1.01458 0.88544 0.95085 1.21551 1.01104 0.92606 0.99312 1.20372 1.02603 0.96124 0.91135 1.21128 0.91765 0.98199 0.90823 1.21145 1.00231 1.10122 0.97313 1.20467 0.92752 0.99044 0.93495 1.17569 0.90986 0.96475 0.93038 1.21356 0.99998 0.97397 0.93652 1.20972 0.92333 0.97488 1.00186 1.21242 0.99441 1.02720 0.93600 1.17498 0.82664 1.00121 0.91825 1.91516 1.45772 1.91857 1.82572 1.21092 0.92532 1.00146 1.01444 1.77456 1.06064 1.14834 1.12075 1.46329 1.16486 1.45004 1.09427 0.71260 1.23104 1.00945 0.96239 0.89448 1.19301 0.86666 0.91808 0.84206 0.92916 1.86554 1.76152 1.31901 1.41006 1.21677 0.96009 1.39457 1.04237 0.92776 1.25019 0.96901 0.95173 0.95514 1.70080 1.06017 1.44183 1.29135 0.86687 0.78247 0.80367 0.83145 1.20506 1.21122 1.19898 0.96618 0.92005 0.91986 0.95563 0.89882 0.90813 0.91643 0.89008 0.89950 0.83342 0.84546 0.84616 0.84622 0.84089 0.95474 0.91939 0.81502 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.27 60.06 0.56 0.89 16 2 N -0.53 -9.23 4.61 -242.93 -1.12 -10.36 16 3 C 0.06 0.85 4.81 -3.83 -0.02 0.84 16 4 C -0.11 -1.31 5.12 -26.73 -0.14 -1.45 16 5 C -0.06 -0.62 5.76 -27.89 -0.16 -0.78 16 6 C 0.11 1.16 6.45 -82.30 -0.53 0.63 16 7 C -0.26 -2.78 10.08 -39.72 -0.40 -3.18 16 8 C 0.11 1.22 6.99 -82.78 -0.58 0.65 16 9 C 0.02 0.21 5.87 -104.90 -0.62 -0.40 16 10 C -0.10 -0.90 9.69 -39.25 -0.38 -1.28 16 11 C -0.09 -0.62 10.03 -39.64 -0.40 -1.02 16 12 C -0.15 -1.08 10.02 -39.45 -0.40 -1.48 16 13 C 0.10 0.86 7.29 -39.46 -0.29 0.58 16 14 F -0.14 -1.32 17.26 2.25 0.04 -1.28 16 15 C -0.13 -1.19 9.55 -39.19 -0.37 -1.57 16 16 N -0.28 -3.44 12.37 33.43 0.41 -3.03 16 17 N -0.46 -5.01 7.35 33.45 0.25 -4.77 16 18 H 0.44 3.80 8.96 -182.61 -1.64 2.16 16 19 C 0.03 0.60 4.57 -3.83 -0.02 0.59 16 20 C 0.24 5.89 2.85 -27.88 -0.08 5.81 16 21 H 0.05 1.42 6.55 -51.93 -0.34 1.08 16 22 O -0.55 -14.25 12.63 -35.23 -0.44 -14.70 16 23 C -0.58 -15.52 8.76 -34.44 -0.30 -15.82 16 24 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 25 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 26 N -0.86 -25.01 12.84 55.43 0.71 -24.29 16 27 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 31 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 32 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 33 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 34 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 35 H 0.08 1.44 6.38 -51.93 -0.33 1.11 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.76 6.60 -51.93 -0.34 0.42 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.15 1.31 7.34 -52.48 -0.39 0.92 16 41 H 0.14 1.13 7.85 -52.49 -0.41 0.72 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 1.11 7.04 -52.49 -0.37 0.74 16 45 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 46 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 47 H 0.34 7.94 9.04 45.56 0.41 8.35 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -32.21 403.44 -10.80 -43.01 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.48 Total: 8.39 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -4.22 Total: -14.89 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.25 Total: -42.45 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.44 Total: -14.70 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.21 -10.80 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929613202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.360 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds