Wall clock time and date at job start Wed Apr 1 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00189 * 2 1 4 4 C 1.53000 * 109.47466 * 293.95692 * 3 2 1 5 5 C 1.52992 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 3 7 7 C 1.35079 * 126.01452 * 84.99650 * 6 5 4 8 8 C 1.40841 * 107.85286 * 180.02562 * 7 6 5 9 9 C 1.48423 * 126.04381 * 180.02562 * 8 7 6 10 10 C 1.39352 * 120.10861 * 180.02562 * 9 8 7 11 11 C 1.38014 * 119.92810 * 179.97438 * 10 9 8 12 12 C 1.38304 * 120.14682 * 0.02562 * 11 10 9 13 13 C 1.38526 * 120.21683 * 359.97438 * 12 11 10 14 14 F 1.35098 * 119.96562 * 180.02562 * 13 12 11 15 15 C 1.38272 * 120.06434 * 359.74643 * 13 12 11 16 16 N 1.31625 * 107.92452 * 0.02562 * 8 7 6 17 17 N 1.35040 * 126.00803 * 264.68804 * 6 5 4 18 18 H 0.97006 * 125.92667 * 359.97438 * 17 6 5 19 19 C 1.46896 * 111.00277 * 123.95796 * 2 1 3 20 20 C 1.52999 * 109.47180 * 164.08188 * 19 2 1 21 21 H 1.09006 * 109.47321 * 58.38705 * 20 19 2 22 22 O 1.42899 * 109.47405 * 298.37952 * 20 19 2 23 23 C 1.50706 * 109.46979 * 178.38358 * 20 19 2 24 24 H 1.08000 * 120.00016 * 359.97438 * 23 20 19 25 25 C 1.37881 * 120.00116 * 180.02562 * 23 20 19 26 26 N 1.31516 * 119.99470 * 359.97438 * 25 23 20 27 27 Si 1.86796 * 120.00041 * 179.97438 * 25 23 20 28 28 H 1.48495 * 109.47152 * 89.99596 * 27 25 23 29 29 H 1.48506 * 109.46910 * 209.99382 * 27 25 23 30 30 H 1.48501 * 109.47262 * 329.99424 * 27 25 23 31 31 H 1.09002 * 109.47103 * 301.97837 * 1 2 3 32 32 H 1.09003 * 109.47324 * 61.98395 * 1 2 3 33 33 H 1.09007 * 109.47239 * 181.98195 * 1 2 3 34 34 H 1.09004 * 109.47117 * 53.95283 * 3 2 1 35 35 H 1.08995 * 109.47507 * 173.95515 * 3 2 1 36 36 H 1.08999 * 109.47274 * 300.00154 * 4 3 2 37 37 H 1.09005 * 109.46812 * 59.99463 * 4 3 2 38 38 H 1.09004 * 109.47305 * 299.99689 * 5 4 3 39 39 H 1.08995 * 109.47347 * 59.99938 * 5 4 3 40 40 H 1.08007 * 126.07623 * 0.02562 * 7 6 5 41 41 H 1.07993 * 120.03888 * 359.95649 * 10 9 8 42 42 H 1.07999 * 119.92353 * 180.02562 * 11 10 9 43 43 H 1.07995 * 119.89429 * 180.02562 * 12 11 10 44 44 H 1.07997 * 120.07372 * 180.27002 * 15 13 12 45 45 H 1.08996 * 109.46929 * 284.07992 * 19 2 1 46 46 H 1.08998 * 109.47218 * 44.08142 * 19 2 1 47 47 H 0.96699 * 113.99934 * 300.00240 * 22 20 19 48 48 H 0.96999 * 119.99706 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1792 3.4860 -1.3179 6 6 1.8201 4.1620 -2.6161 7 6 0.6580 4.7950 -2.8871 8 6 0.7298 5.2836 -4.2061 9 6 -0.3299 6.0437 -4.9147 10 6 -0.1269 6.4692 -6.2260 11 6 -1.1150 7.1753 -6.8816 12 6 -2.3060 7.4621 -6.2398 13 6 -2.5143 7.0421 -4.9362 14 9 -3.6798 7.3246 -4.3143 15 6 -1.5326 6.3291 -4.2730 16 7 1.9027 4.9469 -4.6995 17 7 2.6059 4.2464 -3.7111 18 1 3.5008 3.8825 -3.7990 19 6 1.9954 -0.7660 1.1375 20 6 3.4732 -1.0824 0.8990 21 1 4.0275 -0.1528 0.7690 22 8 3.6051 -1.8841 -0.2765 23 6 4.0236 -1.8339 2.0838 24 1 3.3834 -2.0625 2.9231 25 6 5.3446 -2.2286 2.0968 26 7 6.1242 -1.9497 1.0750 27 14 6.0269 -3.1593 3.5656 28 1 5.8513 -4.6183 3.3521 29 1 7.4717 -2.8519 3.7188 30 1 5.3003 -2.7477 4.7935 31 1 -0.3633 0.5443 0.8717 32 1 -0.3634 0.4827 -0.9072 33 1 -0.3634 -1.0271 0.0355 34 1 1.5611 1.9273 0.8309 35 1 3.0797 1.3444 0.1082 36 1 2.0657 1.5016 -2.1492 37 1 0.5471 2.0845 -1.4264 38 1 1.7445 4.0417 -0.4870 39 1 3.2634 3.4594 -1.2095 40 1 -0.1778 4.9067 -2.2121 41 1 0.8027 6.2468 -6.7287 42 1 -0.9578 7.5046 -7.8981 43 1 -3.0766 8.0146 -6.7568 44 1 -1.6965 5.9978 -3.2583 45 1 1.8923 -0.1788 2.0499 46 1 1.4365 -1.6963 1.2390 47 1 3.1362 -2.7286 -0.2313 48 1 7.0535 -2.2277 1.0839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929613202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:41 Heat of formation + Delta-G solvation = -25.897601 kcal Electronic energy + Delta-G solvation = -28695.701431 eV Core-core repulsion = 24472.271342 eV Total energy + Delta-G solvation = -4223.430089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.88554 -42.32096 -39.75496 -39.21066 -37.00899 -35.11936 -34.19748 -33.60059 -31.75038 -30.96581 -30.62014 -30.22174 -27.66426 -27.10603 -24.80769 -24.51942 -23.62013 -22.68593 -21.36962 -21.28252 -21.20407 -19.02603 -18.44203 -18.11267 -17.14846 -17.01755 -16.71323 -16.60039 -16.58236 -16.46229 -16.23867 -15.79261 -15.39468 -15.36421 -15.16071 -14.84582 -14.69555 -14.44334 -14.22167 -14.04628 -13.72641 -13.49502 -13.15706 -13.06788 -13.01629 -12.82676 -12.79924 -12.70625 -12.51400 -12.42548 -12.22824 -12.00468 -11.95294 -11.66308 -11.46952 -11.08740 -10.94414 -10.68251 -10.08120 -9.85787 -9.71562 -9.37560 -9.04433 -8.12285 -6.37945 -0.19336 0.20783 0.92736 1.40823 1.41285 1.51803 1.77260 1.81010 2.38919 2.77911 3.06131 3.13560 3.16459 3.45385 3.61645 3.85101 3.95177 4.06117 4.17250 4.19016 4.21086 4.29413 4.33945 4.39262 4.42104 4.49160 4.59586 4.64185 4.67995 4.71363 4.80038 4.85754 4.91756 5.00206 5.05800 5.06427 5.07741 5.11541 5.25938 5.29837 5.33811 5.47764 5.57137 5.62148 5.77879 5.88284 6.04291 6.25145 6.29744 6.36683 6.58403 6.76035 7.36344 7.64543 8.91862 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022498 B = 0.001642 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.233094 B =17048.265463 C =17800.320028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.058 3.942 4 C -0.093 4.093 5 C -0.054 4.054 6 C 0.107 3.893 7 C -0.266 4.266 8 C 0.099 3.901 9 C 0.000 4.000 10 C -0.112 4.112 11 C -0.085 4.085 12 C -0.144 4.144 13 C 0.083 3.917 14 F -0.145 7.145 15 C -0.135 4.135 16 N -0.306 5.306 17 N -0.467 5.467 18 H 0.448 0.552 19 C 0.048 3.952 20 C 0.238 3.762 21 H 0.022 0.978 22 O -0.571 6.571 23 C -0.589 4.589 24 H 0.058 0.942 25 C 0.027 3.973 26 N -0.898 5.898 27 Si 0.958 3.042 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.265 1.265 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.167 0.833 41 H 0.135 0.865 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.027 0.973 46 H 0.066 0.934 47 H 0.351 0.649 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.281 19.224 -12.043 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.070 4.070 4 C -0.131 4.131 5 C -0.093 4.093 6 C -0.022 4.022 7 C -0.295 4.295 8 C -0.065 4.065 9 C -0.002 4.002 10 C -0.131 4.131 11 C -0.103 4.103 12 C -0.163 4.163 13 C 0.064 3.936 14 F -0.124 7.124 15 C -0.156 4.156 16 N -0.130 5.130 17 N -0.177 5.177 18 H 0.294 0.706 19 C -0.080 4.080 20 C 0.180 3.820 21 H 0.040 0.960 22 O -0.374 6.374 23 C -0.627 4.627 24 H 0.076 0.924 25 C -0.176 4.176 26 N -0.535 5.535 27 Si 0.783 3.217 28 H -0.199 1.199 29 H -0.209 1.209 30 H -0.189 1.189 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.184 0.816 41 H 0.153 0.847 42 H 0.184 0.816 43 H 0.177 0.823 44 H 0.166 0.834 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.195 0.805 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.845 19.555 -13.711 28.120 hybrid contribution 0.012 -0.994 2.536 2.724 sum -14.833 18.561 -11.175 26.256 Atomic orbital electron populations 1.22455 0.86755 1.01973 1.01052 1.61885 1.08177 1.13671 1.43668 1.22095 0.99652 0.88032 0.97252 1.21386 1.01683 0.93349 0.96718 1.20302 1.02752 0.94754 0.91501 1.21238 0.91844 0.98247 0.90846 1.21436 1.00759 1.09891 0.97412 1.20810 0.92809 0.98861 0.93987 1.17665 0.91129 0.97592 0.93802 1.21500 1.00574 0.97665 0.93404 1.21285 0.91418 0.96280 1.01295 1.21564 1.00014 1.01809 0.92929 1.17692 0.82504 1.00798 0.92610 1.91498 1.46081 1.91982 1.82824 1.21162 0.92346 1.00190 1.01859 1.77408 1.06787 1.15935 1.12917 1.46405 1.16887 1.45004 1.09377 0.70577 1.22684 0.97867 0.97009 0.90445 1.19185 0.89411 0.90202 0.83219 0.96010 1.86501 1.76798 1.32634 1.41482 1.22086 0.96409 1.39264 1.04986 0.92382 1.25871 0.97325 0.96112 0.98257 1.70220 1.06303 1.45653 1.31353 0.85590 0.77412 0.78983 0.79763 1.19905 1.20945 1.18929 0.95365 0.90265 0.91746 0.94030 0.92901 0.92903 0.90420 0.87075 0.89854 0.81592 0.84721 0.81618 0.82257 0.83445 0.95521 0.91512 0.80492 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.27 127.69 1.18 1.85 16 2 N -0.55 -18.70 4.61 -922.48 -4.26 -22.96 16 3 C 0.06 1.73 4.81 86.30 0.41 2.14 16 4 C -0.09 -2.19 5.12 30.59 0.16 -2.04 16 5 C -0.05 -1.00 5.76 29.85 0.17 -0.83 16 6 C 0.11 2.21 6.45 41.34 0.27 2.47 16 7 C -0.27 -5.48 10.08 22.18 0.22 -5.25 16 8 C 0.10 2.26 6.99 42.53 0.30 2.55 16 9 C 0.00 0.00 5.87 -20.05 -0.12 -0.11 16 10 C -0.11 -1.84 9.69 22.48 0.22 -1.62 16 11 C -0.09 -0.97 10.03 22.23 0.22 -0.75 16 12 C -0.14 -1.76 10.02 22.35 0.22 -1.53 16 13 C 0.08 1.36 7.29 22.35 0.16 1.52 16 14 F -0.15 -2.61 17.26 44.97 0.78 -1.83 16 15 C -0.14 -2.34 9.55 22.53 0.22 -2.13 16 16 N -0.31 -7.58 12.37 -48.16 -0.60 -8.18 16 17 N -0.47 -10.16 7.35 -48.08 -0.35 -10.52 16 18 H 0.45 7.95 8.96 -213.33 -1.91 6.04 16 19 C 0.05 1.92 4.57 86.30 0.39 2.31 16 20 C 0.24 11.99 2.85 29.85 0.08 12.08 16 21 H 0.02 1.24 6.55 -2.38 -0.02 1.22 16 22 O -0.57 -29.98 12.63 -148.98 -1.88 -31.86 16 23 C -0.59 -31.97 8.76 25.60 0.22 -31.75 16 24 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 25 C 0.03 1.49 5.40 84.66 0.46 1.94 16 26 N -0.90 -53.31 12.84 21.45 0.28 -53.03 16 27 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 30 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 31 H 0.03 0.67 8.13 -2.39 -0.02 0.65 16 32 H 0.08 1.80 6.56 -2.39 -0.02 1.79 16 33 H 0.06 1.65 7.96 -2.38 -0.02 1.63 16 34 H 0.04 1.11 8.11 -2.39 -0.02 1.10 16 35 H 0.05 1.90 6.38 -2.39 -0.02 1.88 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.65 6.60 -2.38 -0.02 1.64 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.17 2.66 7.34 -2.91 -0.02 2.64 16 41 H 0.13 2.20 7.85 -2.91 -0.02 2.18 16 42 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.15 2.20 7.04 -2.91 -0.02 2.18 16 45 H 0.03 1.05 8.05 -2.39 -0.02 1.03 16 46 H 0.07 2.57 7.87 -2.39 -0.02 2.55 16 47 H 0.35 16.53 9.04 -74.06 -0.67 15.86 16 48 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -69.67 403.44 -0.79 -70.46 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -1.58 Total: 32.20 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.80 Total: -19.15 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -4.93 Total: -94.68 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.88 Total: -31.86 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -69.67 -0.79 -70.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929613202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.566 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds