Wall clock time and date at job start Wed Apr 1 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34457 * 125.79246 * 2 1 4 4 C 1.37830 * 107.42908 * 180.14209 * 3 2 1 5 5 C 1.47747 * 126.37577 * 179.87211 * 4 3 2 6 6 N 1.29788 * 123.09812 * 359.75495 * 5 4 3 7 7 C 1.47595 * 108.41895 * 179.56867 * 6 5 4 8 8 C 1.54815 * 102.01303 * 344.93176 * 7 6 5 9 9 H 1.09002 * 111.04435 * 265.49086 * 8 7 6 10 10 C 1.52994 * 111.04643 * 141.53748 * 8 7 6 11 11 N 1.46898 * 109.47332 * 180.02562 * 10 8 7 12 12 C 1.46898 * 110.99676 * 294.29686 * 11 10 8 13 13 C 1.53243 * 109.33924 * 172.74589 * 12 11 10 14 14 N 1.47083 * 108.52103 * 53.83343 * 13 12 11 15 15 C 1.34769 * 120.88106 * 128.79254 * 14 13 12 16 16 O 1.21686 * 120.00105 * 174.84689 * 15 14 13 17 17 C 1.46378 * 120.00129 * 354.84334 * 15 14 13 18 18 H 1.08003 * 120.00108 * 340.65877 * 17 15 14 19 19 C 1.40054 * 119.99948 * 160.65682 * 17 15 14 20 20 N 1.30669 * 119.99861 * 170.75977 * 19 17 15 21 21 Si 1.86798 * 120.00106 * 350.75604 * 19 17 15 22 22 H 1.48499 * 109.47188 * 84.84317 * 21 19 17 23 23 H 1.48495 * 109.47176 * 204.84850 * 21 19 17 24 24 H 1.48503 * 109.46967 * 324.84845 * 21 19 17 25 25 C 1.47075 * 118.23416 * 308.81975 * 14 13 12 26 26 C 1.46901 * 111.00099 * 170.00416 * 11 10 8 27 27 O 1.34931 * 123.09801 * 179.71750 * 5 4 3 28 28 C 1.41155 * 107.24134 * 359.61418 * 4 3 2 29 29 N 1.30503 * 108.06656 * 0.23486 * 28 4 3 30 30 H 1.08996 * 109.47212 * 270.26402 * 1 2 3 31 31 H 1.08998 * 109.46953 * 30.26540 * 1 2 3 32 32 H 1.08992 * 109.47134 * 150.26223 * 1 2 3 33 33 H 1.07994 * 126.28607 * 0.02562 * 3 2 1 34 34 H 1.09007 * 110.92376 * 226.75405 * 7 6 5 35 35 H 1.08997 * 110.92754 * 103.11187 * 7 6 5 36 36 H 1.08999 * 109.46955 * 300.00475 * 10 8 7 37 37 H 1.09007 * 109.47079 * 59.99940 * 10 8 7 38 38 H 1.08999 * 109.49889 * 292.70457 * 12 11 10 39 39 H 1.09005 * 109.49346 * 52.79489 * 12 11 10 40 40 H 1.09004 * 109.63038 * 294.12407 * 13 12 11 41 41 H 1.09002 * 109.63149 * 173.54059 * 13 12 11 42 42 H 0.97006 * 119.99946 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.62793 * 291.47103 * 25 14 13 44 44 H 1.09004 * 109.78543 * 170.98715 * 25 14 13 45 45 H 1.09009 * 109.48880 * 307.21077 * 26 11 10 46 46 H 1.08995 * 109.49401 * 67.25869 * 26 11 10 47 47 H 1.08001 * 125.95882 * 180.27281 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0906 0.0000 4 6 3.5595 0.6564 -0.0033 5 6 4.7659 1.5094 -0.0071 6 7 4.7169 2.8063 -0.0125 7 6 6.0986 3.3252 -0.0044 8 6 6.9114 2.0712 0.4000 9 1 7.0847 2.0473 1.4759 10 6 8.2324 2.0013 -0.3685 11 7 8.9739 0.8009 0.0404 12 6 9.3846 0.8900 1.4480 13 6 9.9917 -0.4474 1.8851 14 7 11.0659 -0.8024 0.9452 15 6 12.2922 -1.1389 1.3914 16 8 13.1414 -1.5201 0.6076 17 6 12.6027 -1.0460 2.8188 18 1 11.9926 -0.4325 3.4653 19 6 13.6908 -1.7526 3.3462 20 7 14.0792 -1.5327 4.5743 21 14 14.5869 -3.0093 2.2941 22 1 15.6118 -2.3225 1.4676 23 1 15.2471 -4.0090 3.1716 24 1 13.6140 -3.6956 1.4065 25 6 10.7663 -0.7797 -0.4946 26 6 10.1287 0.5708 -0.8379 27 8 6.0201 1.0118 -0.0046 28 6 3.5319 -0.7549 0.0038 29 7 2.2835 -1.1352 0.0058 30 1 -0.3633 0.0047 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8923 -0.5097 33 1 1.9190 2.1182 0.0004 34 1 6.2124 4.1180 0.7350 35 1 6.3891 3.6745 -0.9952 36 1 8.0284 1.9551 -1.4383 37 1 8.8272 2.8883 -0.1501 38 1 10.1265 1.6804 1.5612 39 1 8.5158 1.1145 2.0669 40 1 9.2231 -1.2203 1.8716 41 1 10.4016 -0.3523 2.8906 42 1 14.8332 -2.0218 4.9395 43 1 10.0722 -1.5844 -0.7369 44 1 11.6866 -0.9057 -1.0650 45 1 9.7996 0.5639 -1.8771 46 1 10.8599 1.3660 -0.6933 47 1 4.3935 -1.4060 0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930630279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:52 Heat of formation + Delta-G solvation = 50.432468 kcal Electronic energy + Delta-G solvation = -30091.279066 eV Core-core repulsion = 25891.078859 eV Total energy + Delta-G solvation = -4200.200207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.71759 -41.00622 -39.02706 -37.03595 -34.20903 -33.72947 -33.63048 -32.83333 -31.80779 -30.83882 -29.90199 -27.84614 -27.13010 -26.13289 -24.22955 -23.34270 -22.81032 -21.80984 -21.15220 -20.77605 -19.97153 -18.79583 -17.80998 -17.14334 -16.83215 -16.07097 -15.99170 -15.87857 -15.35791 -15.09580 -14.72784 -14.63670 -14.48975 -14.23185 -14.01736 -13.85017 -13.82199 -13.30253 -13.24900 -13.17046 -12.98041 -12.49239 -12.43460 -12.10287 -11.99933 -11.86858 -11.72742 -11.51350 -11.12977 -11.04125 -10.83506 -10.73451 -10.64222 -10.34658 -10.25652 -9.91784 -9.69794 -9.46969 -9.00600 -8.55612 -8.31312 -7.93297 -7.50923 -6.61582 -4.81717 1.09653 1.77834 1.97482 2.85014 3.10824 3.45454 3.48153 3.68836 3.75908 3.92408 4.13717 4.20725 4.24568 4.43339 4.50046 4.54166 4.61753 4.64857 4.72859 4.81698 4.92248 5.12602 5.14924 5.21128 5.24591 5.32050 5.39462 5.44312 5.46729 5.55812 5.66374 5.68488 5.74857 5.83069 5.94217 6.11018 6.13496 6.25104 6.32393 6.42606 6.42993 6.58553 7.00751 7.10578 7.18226 7.21249 7.60406 7.63889 7.88437 8.32168 8.73171 9.14811 10.03541 10.39819 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002134 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.474010 B =13117.930172 C =13756.824083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.368 5.368 3 C 0.123 3.877 4 C -0.204 4.204 5 C 0.391 3.609 6 N -0.562 5.562 7 C 0.001 3.999 8 C 0.058 3.942 9 H 0.095 0.905 10 C 0.062 3.938 11 N -0.530 5.530 12 C 0.037 3.963 13 C 0.127 3.873 14 N -0.634 5.634 15 C 0.557 3.443 16 O -0.617 6.617 17 C -0.535 4.535 18 H 0.090 0.910 19 C 0.103 3.897 20 N -0.830 5.830 21 Si 0.962 3.038 22 H -0.276 1.276 23 H -0.319 1.319 24 H -0.267 1.267 25 C 0.124 3.876 26 C 0.045 3.955 27 O -0.315 6.315 28 C 0.097 3.903 29 N -0.299 5.299 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.189 0.811 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.282 0.718 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.384 8.898 -8.379 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.147 5.147 3 C -0.030 4.030 4 C -0.218 4.218 5 C 0.169 3.831 6 N -0.300 5.300 7 C -0.129 4.129 8 C 0.000 4.000 9 H 0.112 0.888 10 C -0.067 4.067 11 N -0.255 5.255 12 C -0.092 4.092 13 C 0.003 3.997 14 N -0.368 5.368 15 C 0.366 3.634 16 O -0.509 6.509 17 C -0.571 4.571 18 H 0.108 0.892 19 C -0.114 4.114 20 N -0.460 5.460 21 Si 0.794 3.206 22 H -0.203 1.203 23 H -0.249 1.249 24 H -0.193 1.193 25 C 0.000 4.000 26 C -0.083 4.083 27 O -0.218 6.218 28 C -0.091 4.091 29 N -0.118 5.118 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.206 0.794 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -27.555 7.821 -8.700 29.936 hybrid contribution 2.099 0.836 -0.147 2.265 sum -25.456 8.657 -8.846 28.306 Atomic orbital electron populations 1.21983 0.73318 1.05011 1.03946 1.48426 1.07271 1.03865 1.55146 1.22848 0.89763 0.93758 0.96602 1.17870 0.88956 0.92055 1.22891 1.22384 0.84432 0.88724 0.87608 1.75088 1.20488 1.06875 1.27502 1.23997 0.87792 0.97964 1.03170 1.24231 0.90551 0.85031 1.00186 0.88757 1.22142 0.91797 0.92741 0.99978 1.61939 1.24364 1.35927 1.03256 1.22658 0.98812 0.99051 0.88639 1.21557 0.89533 0.93637 0.94958 1.47802 1.11490 1.73067 1.04444 1.18359 0.79281 0.75927 0.89853 1.90232 1.47266 1.54996 1.58356 1.20726 1.13873 1.30996 0.91471 0.89195 1.25713 0.94676 0.96156 0.94901 1.69557 1.23741 1.37273 1.15423 0.85327 0.79408 0.78477 0.77415 1.20255 1.24944 1.19262 1.21300 0.99691 0.94663 0.84373 1.22520 0.90908 0.98575 0.96307 1.87144 1.14467 1.38714 1.81466 1.24190 0.95275 0.93703 0.95947 1.77305 1.01752 1.07606 1.25163 0.90180 0.89019 0.88789 0.79367 0.88371 0.89348 0.89799 0.92682 0.94365 0.90569 0.92471 0.88074 0.90840 0.92549 0.89444 0.90524 0.94610 0.78592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.32 11.45 59.85 0.69 1.00 16 2 N -0.37 -2.90 3.99 -67.62 -0.27 -3.17 16 3 C 0.12 0.99 11.39 -16.55 -0.19 0.80 16 4 C -0.20 -2.15 6.13 -105.05 -0.64 -2.79 16 5 C 0.39 4.63 7.73 -14.53 -0.11 4.51 16 6 N -0.56 -6.54 11.65 -57.71 -0.67 -7.21 16 7 C 0.00 0.01 7.68 -2.49 -0.02 -0.01 16 8 C 0.06 0.63 3.63 -25.78 -0.09 0.54 16 9 H 0.09 1.03 6.34 -51.93 -0.33 0.70 16 10 C 0.06 0.69 4.66 -3.83 -0.02 0.67 16 11 N -0.53 -7.45 4.63 -234.32 -1.08 -8.54 16 12 C 0.04 0.55 5.47 -3.70 -0.02 0.53 16 13 C 0.13 2.34 6.52 -3.60 -0.02 2.31 16 14 N -0.63 -13.83 3.01 -174.12 -0.52 -14.35 16 15 C 0.56 14.90 7.19 -12.99 -0.09 14.81 16 16 O -0.62 -18.01 12.27 5.20 0.06 -17.94 16 17 C -0.53 -15.00 9.21 -35.63 -0.33 -15.33 16 18 H 0.09 2.49 6.24 -52.48 -0.33 2.16 16 19 C 0.10 2.95 5.52 -17.37 -0.10 2.85 16 20 N -0.83 -23.55 13.92 55.55 0.77 -22.77 16 21 Si 0.96 25.50 25.84 -169.99 -4.39 21.11 16 22 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.32 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.27 -7.41 6.83 56.52 0.39 -7.03 16 25 C 0.12 2.30 6.57 -3.61 -0.02 2.28 16 26 C 0.05 0.68 5.62 -3.70 -0.02 0.66 16 27 O -0.32 -4.03 10.85 -16.51 -0.18 -4.21 16 28 C 0.10 1.02 11.97 -17.01 -0.20 0.82 16 29 N -0.30 -3.17 12.51 30.84 0.39 -2.78 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.79 7.91 -51.93 -0.41 0.38 16 36 H 0.08 0.89 7.97 -51.93 -0.41 0.48 16 37 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.98 6.13 -51.93 -0.32 0.66 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.98 5.49 -51.93 -0.28 1.70 16 42 H 0.28 7.36 8.29 -40.82 -0.34 7.03 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.75 7.11 -51.93 -0.37 1.38 16 45 H 0.08 0.97 7.99 -51.92 -0.41 0.56 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -35.92 383.27 -7.99 -43.91 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -6.67 Total: -3.46 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -1.20 Total: 13.64 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -1.39 Total: -58.82 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.12 Total: -22.15 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.39 Total: 21.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.92 -7.99 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930630279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.343 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds