Wall clock time and date at job start Wed Apr 1 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34457 * 125.79246 * 2 1 4 4 C 1.37830 * 107.42908 * 180.14209 * 3 2 1 5 5 C 1.47747 * 126.37577 * 179.87211 * 4 3 2 6 6 N 1.29788 * 123.09812 * 359.75495 * 5 4 3 7 7 C 1.47595 * 108.41895 * 179.56867 * 6 5 4 8 8 C 1.54815 * 102.01303 * 344.93176 * 7 6 5 9 9 H 1.09002 * 111.04435 * 265.49086 * 8 7 6 10 10 C 1.52994 * 111.04643 * 141.53748 * 8 7 6 11 11 N 1.46898 * 109.47332 * 180.02562 * 10 8 7 12 12 C 1.46898 * 110.99676 * 294.29686 * 11 10 8 13 13 C 1.53243 * 109.33924 * 172.74589 * 12 11 10 14 14 N 1.47083 * 108.52103 * 53.83343 * 13 12 11 15 15 C 1.34769 * 120.88106 * 128.79254 * 14 13 12 16 16 O 1.21686 * 120.00105 * 174.84689 * 15 14 13 17 17 C 1.46378 * 120.00129 * 354.84334 * 15 14 13 18 18 H 1.08003 * 120.00108 * 340.65877 * 17 15 14 19 19 C 1.40054 * 119.99948 * 160.65682 * 17 15 14 20 20 N 1.30669 * 119.99861 * 170.75977 * 19 17 15 21 21 Si 1.86798 * 120.00106 * 350.75604 * 19 17 15 22 22 H 1.48499 * 109.47188 * 84.84317 * 21 19 17 23 23 H 1.48495 * 109.47176 * 204.84850 * 21 19 17 24 24 H 1.48503 * 109.46967 * 324.84845 * 21 19 17 25 25 C 1.47075 * 118.23416 * 308.81975 * 14 13 12 26 26 C 1.46901 * 111.00099 * 170.00416 * 11 10 8 27 27 O 1.34931 * 123.09801 * 179.71750 * 5 4 3 28 28 C 1.41155 * 107.24134 * 359.61418 * 4 3 2 29 29 N 1.30503 * 108.06656 * 0.23486 * 28 4 3 30 30 H 1.08996 * 109.47212 * 270.26402 * 1 2 3 31 31 H 1.08998 * 109.46953 * 30.26540 * 1 2 3 32 32 H 1.08992 * 109.47134 * 150.26223 * 1 2 3 33 33 H 1.07994 * 126.28607 * 0.02562 * 3 2 1 34 34 H 1.09007 * 110.92376 * 226.75405 * 7 6 5 35 35 H 1.08997 * 110.92754 * 103.11187 * 7 6 5 36 36 H 1.08999 * 109.46955 * 300.00475 * 10 8 7 37 37 H 1.09007 * 109.47079 * 59.99940 * 10 8 7 38 38 H 1.08999 * 109.49889 * 292.70457 * 12 11 10 39 39 H 1.09005 * 109.49346 * 52.79489 * 12 11 10 40 40 H 1.09004 * 109.63038 * 294.12407 * 13 12 11 41 41 H 1.09002 * 109.63149 * 173.54059 * 13 12 11 42 42 H 0.97006 * 119.99946 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.62793 * 291.47103 * 25 14 13 44 44 H 1.09004 * 109.78543 * 170.98715 * 25 14 13 45 45 H 1.09009 * 109.48880 * 307.21077 * 26 11 10 46 46 H 1.08995 * 109.49401 * 67.25869 * 26 11 10 47 47 H 1.08001 * 125.95882 * 180.27281 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0906 0.0000 4 6 3.5595 0.6564 -0.0033 5 6 4.7659 1.5094 -0.0071 6 7 4.7169 2.8063 -0.0125 7 6 6.0986 3.3252 -0.0044 8 6 6.9114 2.0712 0.4000 9 1 7.0847 2.0473 1.4759 10 6 8.2324 2.0013 -0.3685 11 7 8.9739 0.8009 0.0404 12 6 9.3846 0.8900 1.4480 13 6 9.9917 -0.4474 1.8851 14 7 11.0659 -0.8024 0.9452 15 6 12.2922 -1.1389 1.3914 16 8 13.1414 -1.5201 0.6076 17 6 12.6027 -1.0460 2.8188 18 1 11.9926 -0.4325 3.4653 19 6 13.6908 -1.7526 3.3462 20 7 14.0792 -1.5327 4.5743 21 14 14.5869 -3.0093 2.2941 22 1 15.6118 -2.3225 1.4676 23 1 15.2471 -4.0090 3.1716 24 1 13.6140 -3.6956 1.4065 25 6 10.7663 -0.7797 -0.4946 26 6 10.1287 0.5708 -0.8379 27 8 6.0201 1.0118 -0.0046 28 6 3.5319 -0.7549 0.0038 29 7 2.2835 -1.1352 0.0058 30 1 -0.3633 0.0047 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8923 -0.5097 33 1 1.9190 2.1182 0.0004 34 1 6.2124 4.1180 0.7350 35 1 6.3891 3.6745 -0.9952 36 1 8.0284 1.9551 -1.4383 37 1 8.8272 2.8883 -0.1501 38 1 10.1265 1.6804 1.5612 39 1 8.5158 1.1145 2.0669 40 1 9.2231 -1.2203 1.8716 41 1 10.4016 -0.3523 2.8906 42 1 14.8332 -2.0218 4.9395 43 1 10.0722 -1.5844 -0.7369 44 1 11.6866 -0.9057 -1.0650 45 1 9.7996 0.5639 -1.8771 46 1 10.8599 1.3660 -0.6933 47 1 4.3935 -1.4060 0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930630279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:51 Heat of formation + Delta-G solvation = 20.113000 kcal Electronic energy + Delta-G solvation = -30092.593817 eV Core-core repulsion = 25891.078859 eV Total energy + Delta-G solvation = -4201.514958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.42993 -41.78675 -40.61178 -38.70326 -35.60482 -35.00439 -34.53314 -34.35312 -32.78406 -32.13199 -30.80364 -29.21122 -28.19169 -27.40311 -25.34052 -24.71048 -23.52668 -22.94793 -22.20793 -21.73821 -20.80278 -20.44518 -18.77855 -18.47140 -18.18912 -17.78415 -16.88883 -16.75634 -16.47587 -16.25274 -15.97303 -15.88333 -15.66400 -15.59540 -15.29341 -15.05838 -14.72408 -14.54429 -14.14606 -14.01118 -13.92269 -13.83832 -13.64015 -13.37970 -13.35046 -13.06606 -12.96675 -12.75724 -12.70193 -12.57657 -12.19805 -12.13832 -11.89313 -11.80393 -11.49394 -11.20949 -11.14910 -10.56976 -10.45848 -10.05089 -9.55977 -9.26434 -9.16586 -8.79851 -6.99732 0.42544 1.03970 1.31170 1.34299 1.48016 1.55687 2.06683 2.08804 2.29788 2.33358 2.56097 2.83643 3.15827 3.28121 3.58000 3.68669 3.76753 3.90789 3.94817 4.01539 4.08953 4.22201 4.25967 4.32890 4.39957 4.47331 4.49016 4.50638 4.60447 4.63030 4.63401 4.74258 4.75801 4.78347 4.80364 4.85619 4.94613 5.03421 5.13019 5.16101 5.35868 5.48423 5.67861 5.90296 5.92469 5.99294 6.02795 6.23538 6.53294 6.62744 6.80004 7.12391 7.95732 8.26136 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002134 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.474010 B =13117.930172 C =13756.824083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.364 5.364 3 C 0.138 3.862 4 C -0.234 4.234 5 C 0.386 3.614 6 N -0.574 5.574 7 C 0.003 3.997 8 C 0.058 3.942 9 H 0.094 0.906 10 C 0.066 3.934 11 N -0.537 5.537 12 C 0.049 3.951 13 C 0.123 3.877 14 N -0.634 5.634 15 C 0.552 3.448 16 O -0.647 6.647 17 C -0.551 4.551 18 H 0.086 0.914 19 C 0.072 3.928 20 N -0.849 5.849 21 Si 1.005 2.995 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.119 3.881 26 C 0.057 3.943 27 O -0.334 6.334 28 C 0.087 3.913 29 N -0.328 5.328 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.217 0.783 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.292 0.708 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.028 0.972 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.666 10.329 -9.125 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.142 5.142 3 C -0.016 4.016 4 C -0.247 4.247 5 C 0.164 3.836 6 N -0.312 5.312 7 C -0.127 4.127 8 C 0.000 4.000 9 H 0.112 0.888 10 C -0.061 4.061 11 N -0.261 5.261 12 C -0.080 4.080 13 C 0.000 4.000 14 N -0.367 5.367 15 C 0.359 3.641 16 O -0.541 6.541 17 C -0.588 4.588 18 H 0.103 0.897 19 C -0.144 4.144 20 N -0.480 5.480 21 Si 0.837 3.163 22 H -0.218 1.218 23 H -0.222 1.222 24 H -0.216 1.216 25 C -0.004 4.004 26 C -0.071 4.071 27 O -0.237 6.237 28 C -0.101 4.101 29 N -0.148 5.148 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.124 0.876 46 H 0.047 0.953 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -29.894 9.258 -9.429 32.684 hybrid contribution 2.638 0.424 0.055 2.673 sum -27.255 9.681 -9.374 30.405 Atomic orbital electron populations 1.22400 0.70741 1.06689 1.05364 1.48814 1.08657 1.03087 1.53678 1.23244 0.88970 0.94790 0.94614 1.18077 0.89688 0.92018 1.24958 1.22579 0.84421 0.88960 0.87602 1.75056 1.21480 1.06766 1.27881 1.24067 0.86727 0.97666 1.04202 1.24260 0.90309 0.85331 1.00075 0.88829 1.22189 0.91508 0.91888 1.00544 1.61895 1.23781 1.38029 1.02440 1.22492 0.99311 0.96300 0.89851 1.21688 0.88617 0.96043 0.93623 1.47788 1.10660 1.71606 1.06603 1.18304 0.80580 0.75882 0.89301 1.90202 1.48761 1.56266 1.58900 1.20934 1.14157 1.31300 0.92372 0.89658 1.26182 0.95369 0.97237 0.95621 1.69553 1.24557 1.38102 1.15779 0.84731 0.77874 0.77497 0.76222 1.21841 1.22187 1.21632 1.21483 0.99414 0.97503 0.81984 1.22375 0.90991 0.95758 0.98000 1.87126 1.15195 1.39666 1.81721 1.24269 0.95493 0.94102 0.96208 1.77235 1.02134 1.09289 1.26145 0.88866 0.85943 0.88580 0.76666 0.86927 0.88333 0.88847 0.91013 0.95099 0.88107 0.91637 0.89804 0.89802 0.91667 0.91281 0.87566 0.95327 0.78588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 11.45 127.77 1.46 1.81 16 2 N -0.36 -5.09 3.99 -367.83 -1.47 -6.56 16 3 C 0.14 1.94 11.39 84.19 0.96 2.90 16 4 C -0.23 -4.69 6.13 -20.14 -0.12 -4.81 16 5 C 0.39 8.60 7.73 87.51 0.68 9.28 16 6 N -0.57 -12.15 11.65 -450.98 -5.26 -17.41 16 7 C 0.00 0.06 7.68 86.79 0.67 0.72 16 8 C 0.06 1.12 3.63 31.21 0.11 1.24 16 9 H 0.09 1.81 6.34 -2.39 -0.02 1.79 16 10 C 0.07 1.28 4.66 86.30 0.40 1.68 16 11 N -0.54 -13.86 4.63 -895.26 -4.14 -18.00 16 12 C 0.05 1.38 5.47 86.38 0.47 1.85 16 13 C 0.12 4.48 6.52 86.35 0.56 5.04 16 14 N -0.63 -27.70 3.01 -823.02 -2.48 -30.18 16 15 C 0.55 30.02 7.19 86.36 0.62 30.64 16 16 O -0.65 -38.44 12.27 -4.30 -0.05 -38.49 16 17 C -0.55 -31.47 9.21 24.83 0.23 -31.24 16 18 H 0.09 4.84 6.24 -2.91 -0.02 4.82 16 19 C 0.07 4.12 5.52 85.31 0.47 4.59 16 20 N -0.85 -48.23 13.92 21.84 0.30 -47.92 16 21 Si 1.01 53.00 25.84 68.60 1.77 54.77 16 22 H -0.29 -15.94 7.11 99.48 0.71 -15.23 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.29 -16.21 6.83 99.48 0.68 -15.53 16 25 C 0.12 4.36 6.57 86.35 0.57 4.92 16 26 C 0.06 1.59 5.62 86.38 0.49 2.08 16 27 O -0.33 -8.02 10.85 -82.01 -0.89 -8.91 16 28 C 0.09 1.81 11.97 85.61 1.03 2.84 16 29 N -0.33 -6.77 12.51 -56.34 -0.70 -7.48 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 31 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.22 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.10 1.47 7.91 -2.39 -0.02 1.45 16 36 H 0.09 1.67 7.97 -2.39 -0.02 1.65 16 37 H 0.07 1.20 8.13 -2.38 -0.02 1.18 16 38 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 2.37 6.13 -2.38 -0.01 2.35 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.08 3.33 5.49 -2.39 -0.01 3.32 16 42 H 0.29 15.13 8.29 -92.70 -0.77 14.36 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.07 2.77 7.11 -2.39 -0.02 2.76 16 45 H 0.11 2.37 7.99 -2.38 -0.02 2.35 16 46 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.20 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -77.92 383.27 -3.36 -81.28 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.97 Total: 5.35 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 8.59 Total: 33.55 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -13.74 Total: -127.54 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.94 Total: -47.40 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 1.77 Total: 54.77 kcal Total: -77.92 -3.36 -81.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930630279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.390 kcal (2) G-P(sol) polarization free energy of solvation -77.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds