Wall clock time and date at job start Wed Apr 1 2020 06:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48496 * 109.47137 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46957 * 119.99963 * 3 2 1 6 6 H 1.48503 * 109.47120 * 239.99848 * 3 2 1 7 7 C 1.39942 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99452 * 192.36100 * 7 2 1 9 9 C 1.41388 * 120.00297 * 12.35504 * 7 2 1 10 10 C 1.40573 * 120.07816 * 27.63946 * 9 7 2 11 11 C 1.37600 * 119.53824 * 180.02562 * 10 9 7 12 12 C 1.38442 * 120.14555 * 0.09870 * 11 10 9 13 13 C 1.39147 * 120.91637 * 359.93908 * 12 11 10 14 14 C 1.37252 * 119.86164 * 359.56865 * 13 12 11 15 15 C 1.50683 * 121.80681 * 180.82707 * 14 13 12 16 16 C 1.52897 * 109.97298 * 343.09076 * 15 14 13 17 17 N 1.47173 * 108.46372 * 50.32784 * 16 15 14 18 18 C 1.46904 * 110.99686 * 165.54966 * 17 16 15 19 19 C 1.52999 * 109.47002 * 283.56146 * 18 17 16 20 20 H 1.09000 * 109.47188 * 59.24112 * 19 18 17 21 21 O 1.42904 * 109.47495 * 299.23881 * 19 18 17 22 22 C 1.52996 * 109.47278 * 179.23868 * 19 18 17 23 23 C 1.52994 * 109.47468 * 185.00070 * 22 19 18 24 24 O 1.42904 * 110.45776 * 66.15315 * 23 22 19 25 25 C 1.54511 * 110.51207 * 188.90305 * 23 22 19 26 26 C 1.54478 * 104.06101 * 118.64778 * 25 23 22 27 27 O 1.44417 * 104.80413 * 23.97721 * 26 25 23 28 28 C 1.44417 * 105.27913 * 319.48908 * 27 26 25 29 29 C 1.46937 * 109.96317 * 288.67266 * 17 16 15 30 30 H 0.97003 * 120.00022 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.22932 * 0.04491 * 10 9 7 32 32 H 1.07998 * 119.92940 * 180.02562 * 11 10 9 33 33 H 1.07997 * 119.53904 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.38051 * 103.24110 * 15 14 13 35 35 H 1.08995 * 109.38902 * 223.03468 * 15 14 13 36 36 H 1.08992 * 109.63616 * 170.02126 * 16 15 14 37 37 H 1.09004 * 109.63773 * 290.64140 * 16 15 14 38 38 H 1.08998 * 109.46992 * 43.56650 * 18 17 16 39 39 H 1.09003 * 109.46508 * 163.56716 * 18 17 16 40 40 H 0.96700 * 113.99858 * 300.00063 * 21 19 18 41 41 H 1.09001 * 109.46964 * 305.00638 * 22 19 18 42 42 H 1.09002 * 109.47090 * 64.99528 * 22 19 18 43 43 H 0.96697 * 114.00100 * 180.02562 * 24 23 22 44 44 H 1.08998 * 110.51029 * 237.28992 * 25 23 22 45 45 H 1.08996 * 110.51178 * 0.02562 * 25 23 22 46 46 H 1.09007 * 110.36798 * 265.14586 * 26 25 23 47 47 H 1.08998 * 110.46610 * 142.86096 * 26 25 23 48 48 H 1.09003 * 110.37861 * 281.68271 * 28 27 26 49 49 H 1.09002 * 110.37875 * 159.34422 * 28 27 26 50 50 H 1.08998 * 109.82639 * 292.44490 * 29 17 16 51 51 H 1.08997 * 108.81030 * 172.92723 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7465 -0.0006 5 1 3.0959 1.6965 1.2125 6 1 3.0960 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0692 -1.2227 0.1997 9 6 1.3257 -2.4221 -0.2631 10 6 0.1678 -2.4195 -1.0602 11 6 -0.4878 -3.6036 -1.3081 12 6 -0.0100 -4.7880 -0.7737 13 6 1.1345 -4.8049 0.0176 14 6 1.8090 -3.6362 0.2687 15 6 3.0627 -3.6067 1.1041 16 6 3.1812 -4.8981 1.9140 17 7 3.0008 -6.0387 1.0017 18 6 3.4362 -7.2917 1.6329 19 6 4.9647 -7.3598 1.6303 20 1 5.3673 -6.5062 2.1756 21 8 5.4405 -7.3319 0.2831 22 6 5.4186 -8.6559 2.3047 23 6 6.9446 -8.6666 2.4140 24 8 7.3887 -7.6415 3.3052 25 6 7.4440 -10.0509 2.8848 26 6 8.3304 -10.5460 1.7206 27 8 8.7525 -9.3436 1.0411 28 6 7.5885 -8.4891 1.0211 29 6 1.5964 -6.1248 0.5779 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2045 -1.4946 -1.4753 32 1 -1.3777 -3.6090 -1.9200 33 1 -0.5324 -5.7116 -0.9742 34 1 3.9301 -3.5080 0.4514 35 1 3.0238 -2.7565 1.7851 36 1 4.1668 -4.9512 2.3765 37 1 2.4102 -4.9195 2.6842 38 1 3.0726 -7.3266 2.6599 39 1 3.0338 -8.1379 1.0760 40 1 5.1214 -8.0641 -0.2620 41 1 4.9824 -8.7188 3.3016 42 1 5.0909 -9.5088 1.7103 43 1 8.3489 -7.6021 3.4121 44 1 8.0314 -9.9547 3.7979 45 1 6.6037 -10.7278 3.0392 46 1 7.7532 -11.1797 1.0472 47 1 9.1946 -11.0887 2.1036 48 1 6.8974 -8.8073 0.2404 49 1 7.8825 -7.4506 0.8685 50 1 0.9696 -6.3938 1.4281 51 1 1.5077 -6.8926 -0.1906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931332956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:18 Heat of formation + Delta-G solvation = -124.830774 kcal Electronic energy + Delta-G solvation = -31238.100232 eV Core-core repulsion = 27101.547632 eV Total energy + Delta-G solvation = -4136.552600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.50455 -39.03826 -37.65520 -36.29800 -35.76976 -33.60478 -32.51396 -31.88976 -30.84202 -30.02268 -28.63158 -28.25439 -25.67595 -25.08290 -23.44180 -23.02109 -22.43710 -21.07506 -20.77374 -20.40132 -18.42775 -17.72661 -16.99916 -16.73652 -16.22523 -15.79363 -15.73499 -15.48042 -15.06872 -14.78851 -14.63183 -14.57994 -14.26654 -13.95159 -13.65025 -13.50218 -13.23653 -13.03721 -12.62350 -12.43209 -12.30726 -12.11328 -11.96280 -11.76065 -11.64170 -11.54942 -11.35180 -11.15238 -11.09154 -11.08504 -10.96236 -10.68799 -10.63247 -10.52274 -10.36149 -10.08975 -10.06118 -9.58602 -9.35341 -9.14241 -9.09637 -7.95151 -7.19840 -7.11079 -6.65214 -4.30172 2.84152 3.01703 3.10180 3.13621 3.26390 3.60973 3.86296 3.91014 3.98482 4.23029 4.39016 4.48053 4.54827 4.67375 4.68964 4.83450 4.94197 5.08513 5.21509 5.27211 5.28382 5.36116 5.44831 5.49415 5.58216 5.60072 5.63237 5.72199 5.80759 5.83754 5.97252 6.04421 6.08845 6.14850 6.21399 6.41563 6.46901 6.47643 6.76402 6.89430 6.99763 7.14186 7.24497 7.33089 7.33896 7.48528 7.55169 7.70476 7.75267 7.98479 8.12787 8.15336 8.36265 8.70349 8.96617 9.04718 10.28116 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.002393 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.004746 B =11696.823271 C =12756.800076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.109 3.891 10 C -0.162 4.162 11 C -0.109 4.109 12 C -0.234 4.234 13 C -0.063 4.063 14 C -0.166 4.166 15 C -0.046 4.046 16 C 0.055 3.945 17 N -0.515 5.515 18 C 0.020 3.980 19 C 0.116 3.884 20 H 0.107 0.893 21 O -0.540 6.540 22 C -0.134 4.134 23 C 0.109 3.891 24 O -0.550 6.550 25 C -0.187 4.187 26 C 0.043 3.957 27 O -0.382 6.382 28 C 0.026 3.974 29 C 0.106 3.894 30 H 0.278 0.722 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.366 0.634 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.380 0.620 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.029 0.971 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.135 -18.149 5.639 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.107 3.893 10 C -0.181 4.181 11 C -0.127 4.127 12 C -0.254 4.254 13 C -0.063 4.063 14 C -0.167 4.167 15 C -0.084 4.084 16 C -0.073 4.073 17 N -0.238 5.238 18 C -0.109 4.109 19 C 0.056 3.944 20 H 0.125 0.875 21 O -0.345 6.345 22 C -0.172 4.172 23 C 0.068 3.932 24 O -0.356 6.356 25 C -0.225 4.225 26 C -0.034 4.034 27 O -0.301 6.301 28 C -0.050 4.050 29 C -0.022 4.022 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.213 0.787 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.228 0.772 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.124 0.876 50 H 0.047 0.953 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.093 -17.196 5.400 21.164 hybrid contribution -0.338 -0.144 0.704 0.794 sum 10.755 -17.340 6.104 21.298 Atomic orbital electron populations 1.69805 1.07437 1.28947 1.36609 1.25885 0.94762 1.01127 0.92474 0.86383 0.80045 0.80433 0.79924 1.20494 1.19062 1.18913 1.19525 0.96291 0.90482 1.42582 0.90404 1.17543 0.91573 0.91480 0.88695 1.21310 0.98856 0.96540 1.01399 1.20582 0.98595 0.93493 1.00079 1.20186 1.00349 0.96540 1.08330 1.18878 0.95870 0.92399 0.99144 1.19349 0.99343 0.92967 1.05087 1.20104 0.96474 0.94602 0.97193 1.22254 0.99443 0.91860 0.93700 1.62472 1.20324 1.01851 1.39158 1.22826 0.96279 0.93853 0.97971 1.21868 0.92198 0.96943 0.83350 0.87538 1.86716 1.73099 1.52979 1.21693 1.22276 0.92409 0.99637 1.02917 1.22471 0.94821 0.86386 0.89540 1.86535 1.27815 1.55080 1.66178 1.23726 1.00961 0.97892 0.99890 1.23391 0.98570 0.88725 0.92751 1.89171 1.34096 1.28175 1.78700 1.24428 0.87441 0.96625 0.96532 1.20902 0.86714 0.96751 0.97795 0.91062 0.86336 0.89574 0.89853 0.92119 0.91372 0.91636 0.95237 0.94305 0.91108 0.78738 0.89924 0.90115 0.77194 0.89840 0.89696 0.92192 0.89167 0.90207 0.87557 0.95307 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.98 10.84 55.55 0.60 -20.38 16 2 C 0.07 1.87 5.23 -17.34 -0.09 1.78 16 3 Si 0.91 19.00 29.58 -169.99 -5.03 13.97 16 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.12 8.09 -37.75 -0.31 -12.43 16 8 H 0.08 1.98 7.03 -52.49 -0.37 1.61 16 9 C 0.11 2.93 5.57 -106.74 -0.59 2.33 16 10 C -0.16 -4.28 8.66 -38.93 -0.34 -4.62 16 11 C -0.11 -2.62 10.02 -39.74 -0.40 -3.02 16 12 C -0.23 -5.31 9.65 -39.17 -0.38 -5.69 16 13 C -0.06 -1.41 5.79 -104.67 -0.61 -2.01 16 14 C -0.17 -4.03 5.83 -103.91 -0.61 -4.64 16 15 C -0.05 -0.99 4.95 -27.94 -0.14 -1.12 16 16 C 0.06 0.97 5.39 -3.73 -0.02 0.95 16 17 N -0.51 -8.51 4.52 -235.90 -1.07 -9.58 16 18 C 0.02 0.24 4.64 -3.82 -0.02 0.22 16 19 C 0.12 1.27 2.93 -26.73 -0.08 1.20 16 20 H 0.11 1.43 6.43 -51.93 -0.33 1.09 16 21 O -0.54 -6.28 10.17 -35.23 -0.36 -6.64 16 22 C -0.13 -1.11 4.08 -26.74 -0.11 -1.22 16 23 C 0.11 0.93 1.12 -89.05 -0.10 0.83 16 24 O -0.55 -5.38 12.59 -35.23 -0.44 -5.83 16 25 C -0.19 -1.24 6.51 -25.16 -0.16 -1.41 16 26 C 0.04 0.30 7.63 37.93 0.29 0.59 16 27 O -0.38 -3.93 11.65 -35.23 -0.41 -4.35 16 28 C 0.03 0.25 5.22 37.93 0.20 0.45 16 29 C 0.11 1.91 5.12 -4.98 -0.03 1.88 16 30 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 31 H 0.12 3.24 6.18 -52.49 -0.32 2.92 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.48 7.36 -51.93 -0.38 1.09 16 36 H 0.07 1.04 6.61 -51.93 -0.34 0.70 16 37 H 0.03 0.53 8.04 -51.93 -0.42 0.11 16 38 H 0.04 0.46 7.99 -51.93 -0.41 0.05 16 39 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 40 H 0.37 3.08 8.47 45.56 0.39 3.47 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.38 2.64 9.04 45.56 0.41 3.05 16 44 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16 45 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.71 5.96 -51.93 -0.31 0.40 16 49 H 0.11 1.19 7.98 -51.93 -0.41 0.77 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.07 1.16 8.11 -51.93 -0.42 0.73 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -30.47 393.23 -10.94 -41.40 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.68 Total: 11.39 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -3.48 Total: -25.92 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: -0.46 Total: -29.95 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.21 Total: -16.81 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.47 -10.94 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.427 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds