Wall clock time and date at job start Wed Apr 1 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 119.99962 * 2 1 4 4 H 1.48502 * 109.47501 * 85.54102 * 3 2 1 5 5 H 1.48504 * 109.46982 * 205.54036 * 3 2 1 6 6 H 1.48497 * 109.47124 * 325.54021 * 3 2 1 7 7 C 1.39943 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99971 * 15.54968 * 7 2 1 9 9 C 1.41392 * 120.00455 * 195.54403 * 7 2 1 10 10 C 1.40569 * 120.07643 * 28.50123 * 9 7 2 11 11 C 1.37603 * 119.53797 * 180.02562 * 10 9 7 12 12 C 1.38439 * 120.14647 * 0.10117 * 11 10 9 13 13 C 1.39143 * 120.91286 * 359.94066 * 12 11 10 14 14 C 1.37253 * 119.86418 * 359.56413 * 13 12 11 15 15 C 1.50682 * 121.80456 * 180.82975 * 14 13 12 16 16 C 1.52901 * 109.97624 * 343.09178 * 15 14 13 17 17 N 1.47164 * 108.46118 * 50.32780 * 16 15 14 18 18 C 1.46904 * 110.99550 * 165.54670 * 17 16 15 19 19 C 1.53004 * 109.46587 * 170.00462 * 18 17 16 20 20 H 1.09000 * 109.46936 * 304.99794 * 19 18 17 21 21 O 1.42897 * 109.47386 * 65.00423 * 19 18 17 22 22 C 1.53005 * 109.46781 * 185.00177 * 19 18 17 23 23 C 1.52995 * 109.46972 * 174.99569 * 22 19 18 24 24 O 1.42904 * 110.45757 * 66.15319 * 23 22 19 25 25 C 1.54510 * 110.51127 * 188.90138 * 23 22 19 26 26 C 1.54487 * 104.06063 * 118.64705 * 25 23 22 27 27 O 1.44423 * 104.80107 * 23.98185 * 26 25 23 28 28 C 1.44423 * 105.27660 * 319.48558 * 27 26 25 29 29 C 1.46928 * 109.96771 * 288.67449 * 17 16 15 30 30 H 0.97006 * 120.00050 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.23343 * 0.04454 * 10 9 7 32 32 H 1.08003 * 119.92747 * 180.02562 * 11 10 9 33 33 H 1.07994 * 119.54027 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.38670 * 103.24674 * 15 14 13 35 35 H 1.09004 * 109.38598 * 223.03782 * 15 14 13 36 36 H 1.08998 * 109.63226 * 170.02431 * 16 15 14 37 37 H 1.09000 * 109.63303 * 290.43097 * 16 15 14 38 38 H 1.08998 * 109.47455 * 289.99855 * 18 17 16 39 39 H 1.08993 * 109.47311 * 50.00464 * 18 17 16 40 40 H 0.96701 * 114.00177 * 59.99863 * 21 19 18 41 41 H 1.08994 * 109.47186 * 294.99878 * 22 19 18 42 42 H 1.09007 * 109.46929 * 54.99756 * 22 19 18 43 43 H 0.96695 * 113.99972 * 179.97438 * 24 23 22 44 44 H 1.08994 * 110.51561 * 237.29036 * 25 23 22 45 45 H 1.09004 * 110.51337 * 0.02562 * 25 23 22 46 46 H 1.08999 * 110.37199 * 265.14862 * 26 25 23 47 47 H 1.09001 * 110.46277 * 142.86184 * 26 25 23 48 48 H 1.09003 * 110.37195 * 281.68434 * 28 27 26 49 49 H 1.08996 * 110.37230 * 159.34155 * 28 27 26 50 50 H 1.09003 * 109.82510 * 292.44439 * 29 17 16 51 51 H 1.09002 * 108.81309 * 172.93011 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3955 2.1010 1.3958 5 1 3.5838 1.4148 -0.6037 6 1 1.4900 2.6236 -0.7922 7 6 2.0079 -1.2119 0.0005 8 1 1.4976 -2.1303 -0.2498 9 6 3.3831 -1.2343 0.3287 10 6 3.9167 -0.2636 1.1942 11 6 5.2566 -0.2955 1.5056 12 6 6.0723 -1.2762 0.9677 13 6 5.5575 -2.2424 0.1090 14 6 4.2217 -2.2346 -0.2065 15 6 3.6146 -3.2706 -1.1167 16 6 4.7144 -3.9817 -1.9057 17 7 5.7492 -4.4316 -0.9610 18 6 6.6500 -5.4056 -1.5916 19 6 7.8477 -5.6609 -0.6743 20 1 8.3307 -4.7134 -0.4353 21 8 7.4002 -6.2849 0.5309 22 6 8.8465 -6.5780 -1.3830 23 6 10.0991 -6.7328 -0.5182 24 8 9.7889 -7.4304 0.6898 25 6 11.2100 -7.4678 -1.3012 26 6 12.3642 -6.4429 -1.3662 27 8 12.1412 -5.5643 -0.2418 28 6 10.7134 -5.3510 -0.2028 29 6 6.4998 -3.2759 -0.4512 30 1 -0.4850 0.8401 -0.0004 31 1 3.2794 0.5016 1.6121 32 1 5.6731 0.4469 2.1703 33 1 7.1226 -1.2917 1.2184 34 1 3.0677 -4.0006 -0.5200 35 1 2.9292 -2.7849 -1.8114 36 1 4.2940 -4.8423 -2.4259 37 1 5.1496 -3.2927 -2.6297 38 1 6.1148 -6.3403 -1.7588 39 1 7.0005 -5.0119 -2.5456 40 1 6.9597 -7.1347 0.3937 41 1 8.3920 -7.5557 -1.5426 42 1 9.1202 -6.1432 -2.3444 43 1 10.5471 -7.5573 1.2764 44 1 11.5249 -8.3640 -0.7669 45 1 10.8671 -7.7204 -2.3045 46 1 12.3217 -5.8823 -2.3001 47 1 13.3264 -6.9459 -1.2699 48 1 10.4177 -4.6230 -0.9582 49 1 10.4066 -5.0167 0.7882 50 1 7.0846 -2.8307 -1.2562 51 1 7.1728 -3.6138 0.3369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931332959.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:38 Heat of formation + Delta-G solvation = -120.775539 kcal Electronic energy + Delta-G solvation = -31506.732413 eV Core-core repulsion = 27370.355661 eV Total energy + Delta-G solvation = -4136.376751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.53839 -39.27270 -37.77073 -36.36223 -35.66094 -33.62446 -32.68521 -32.02111 -31.08180 -30.41624 -28.99048 -28.12096 -25.92458 -24.94071 -24.30797 -23.12445 -22.23005 -21.10975 -20.71411 -20.36343 -18.76711 -17.71143 -17.15391 -16.91931 -16.35683 -16.02408 -15.82781 -15.36397 -15.04820 -14.90075 -14.79045 -14.52035 -14.47668 -14.20827 -13.57058 -13.43586 -13.29630 -13.15132 -12.90074 -12.74173 -12.49737 -12.18692 -11.99520 -11.90456 -11.80041 -11.63408 -11.51283 -11.28990 -11.23373 -11.12669 -11.02358 -10.82302 -10.70742 -10.53909 -10.23422 -10.02046 -9.88844 -9.70716 -9.52335 -9.34686 -9.07147 -8.04504 -7.44244 -7.34510 -6.90093 -4.43632 2.66433 2.66842 3.14197 3.24786 3.35000 3.49603 3.82119 3.93691 4.01615 4.14457 4.32799 4.38872 4.51223 4.53951 4.64862 4.74368 4.79743 5.02904 5.10440 5.20703 5.24344 5.30456 5.33084 5.37738 5.42189 5.46779 5.53051 5.56034 5.64749 5.71886 5.83129 5.86186 6.00074 6.04719 6.07418 6.18300 6.29320 6.34177 6.55428 6.68876 6.73290 6.90204 6.98294 7.16169 7.35084 7.38226 7.38696 7.55009 7.76373 7.79813 7.84960 7.96872 8.16747 8.40211 8.72305 8.85731 10.11984 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.002442 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.384688 B =11462.029770 C =12108.895386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.083 3.917 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.244 1.244 6 H -0.295 1.295 7 C -0.442 4.442 8 H 0.093 0.907 9 C 0.093 3.907 10 C -0.243 4.243 11 C -0.080 4.080 12 C -0.238 4.238 13 C -0.047 4.047 14 C -0.156 4.156 15 C -0.049 4.049 16 C 0.053 3.947 17 N -0.516 5.516 18 C 0.020 3.980 19 C 0.106 3.894 20 H 0.099 0.901 21 O -0.529 6.529 22 C -0.136 4.136 23 C 0.114 3.886 24 O -0.533 6.533 25 C -0.187 4.187 26 C 0.041 3.959 27 O -0.375 6.375 28 C 0.014 3.986 29 C 0.098 3.902 30 H 0.284 0.716 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.370 0.630 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.375 0.625 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.106 0.894 50 H 0.030 0.970 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.179 -13.280 -5.924 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.135 4.135 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.167 1.167 6 H -0.223 1.223 7 C -0.471 4.471 8 H 0.111 0.889 9 C 0.090 3.910 10 C -0.262 4.262 11 C -0.098 4.098 12 C -0.257 4.257 13 C -0.048 4.048 14 C -0.157 4.157 15 C -0.086 4.086 16 C -0.074 4.074 17 N -0.239 5.239 18 C -0.109 4.109 19 C 0.046 3.954 20 H 0.117 0.883 21 O -0.333 6.333 22 C -0.174 4.174 23 C 0.072 3.928 24 O -0.338 6.338 25 C -0.225 4.225 26 C -0.036 4.036 27 O -0.293 6.293 28 C -0.063 4.063 29 C -0.029 4.029 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.216 0.784 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.222 0.778 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.086 0.914 49 H 0.124 0.876 50 H 0.048 0.952 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.470 -12.812 -5.401 23.119 hybrid contribution 0.844 0.704 -0.912 1.428 sum 19.314 -12.108 -6.313 23.654 Atomic orbital electron populations 1.69680 1.08011 1.30097 1.35888 1.26161 0.94734 1.01696 0.90946 0.86292 0.81103 0.79767 0.78638 1.19914 1.16744 1.22339 1.19497 0.92186 0.95733 1.39666 0.88933 1.17666 0.93013 0.90664 0.89667 1.20913 0.95303 1.04218 1.05809 1.20461 0.93904 0.97121 0.98306 1.20196 0.97936 1.00561 1.07052 1.19006 0.93402 0.94819 0.97525 1.19289 0.92059 1.00601 1.03799 1.20150 0.95727 0.95744 0.97028 1.22250 0.93624 0.98078 0.93483 1.62551 1.12848 1.13107 1.35430 1.22923 0.94525 0.97640 0.95822 1.21991 0.91890 0.95876 0.85615 0.88314 1.86663 1.78806 1.38574 1.29236 1.22345 0.95138 1.02016 0.97915 1.22361 0.93952 0.90630 0.85834 1.86660 1.38712 1.77700 1.30764 1.23745 0.96409 0.99812 1.02519 1.23440 0.98982 0.90890 0.90269 1.89179 1.23029 1.67864 1.49272 1.24329 0.80934 0.97105 1.03937 1.21026 0.94861 0.89027 0.98002 0.90572 0.88439 0.89007 0.89158 0.91797 0.90878 0.91564 0.95041 0.90527 0.94668 0.78369 0.90179 0.89746 0.77751 0.89701 0.89635 0.92078 0.88925 0.91357 0.87559 0.95221 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.78 13.93 55.55 0.77 -21.00 16 2 C 0.08 2.19 5.44 -17.34 -0.09 2.09 16 3 Si 0.91 21.28 24.40 -169.99 -4.15 17.13 16 4 H -0.27 -6.22 6.68 56.52 0.38 -5.84 16 5 H -0.24 -5.83 6.69 56.52 0.38 -5.45 16 6 H -0.30 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.44 -11.89 8.60 -37.74 -0.32 -12.22 16 8 H 0.09 2.58 7.25 -52.48 -0.38 2.20 16 9 C 0.09 2.38 5.18 -106.74 -0.55 1.83 16 10 C -0.24 -6.05 7.04 -38.93 -0.27 -6.32 16 11 C -0.08 -1.79 10.02 -39.74 -0.40 -2.19 16 12 C -0.24 -5.11 9.65 -39.17 -0.38 -5.48 16 13 C -0.05 -1.01 5.79 -104.66 -0.61 -1.62 16 14 C -0.16 -3.63 5.83 -103.91 -0.61 -4.24 16 15 C -0.05 -1.00 4.95 -27.94 -0.14 -1.14 16 16 C 0.05 0.88 5.53 -3.73 -0.02 0.86 16 17 N -0.52 -8.22 4.80 -235.91 -1.13 -9.35 16 18 C 0.02 0.23 4.83 -3.82 -0.02 0.21 16 19 C 0.11 1.14 2.19 -26.73 -0.06 1.08 16 20 H 0.10 1.16 4.66 -51.93 -0.24 0.92 16 21 O -0.53 -6.75 11.85 -53.87 -0.64 -7.39 16 22 C -0.14 -1.08 3.99 -26.73 -0.11 -1.18 16 23 C 0.11 0.92 1.12 -89.05 -0.10 0.83 16 24 O -0.53 -4.94 11.61 -53.87 -0.63 -5.57 16 25 C -0.19 -1.18 6.51 -25.16 -0.16 -1.34 16 26 C 0.04 0.28 7.63 37.94 0.29 0.57 16 27 O -0.37 -3.74 11.65 -35.23 -0.41 -4.15 16 28 C 0.01 0.13 5.69 37.93 0.22 0.34 16 29 C 0.10 1.70 4.32 -4.98 -0.02 1.68 16 30 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 31 H 0.10 2.42 4.32 -52.49 -0.23 2.20 16 32 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.52 7.38 -51.93 -0.38 1.14 16 36 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 37 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.37 3.81 9.05 45.56 0.41 4.23 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.38 2.53 9.04 45.56 0.41 2.95 16 44 H 0.08 0.50 8.00 -51.93 -0.42 0.08 16 45 H 0.09 0.45 7.73 -51.93 -0.40 0.04 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.60 7.45 -51.93 -0.39 0.21 16 49 H 0.11 1.09 8.09 -51.93 -0.42 0.67 16 50 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.08 1.40 6.30 -51.93 -0.33 1.07 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -30.73 387.85 -10.29 -41.02 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.60 Total: 9.72 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -3.36 Total: -26.25 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: -0.36 Total: -30.35 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.67 Total: -17.11 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.15 Total: 17.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.73 -10.29 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332959.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.758 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds