Wall clock time and date at job start Wed Apr 1 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 119.99962 * 2 1 4 4 H 1.48502 * 109.47501 * 85.54102 * 3 2 1 5 5 H 1.48504 * 109.46982 * 205.54036 * 3 2 1 6 6 H 1.48497 * 109.47124 * 325.54021 * 3 2 1 7 7 C 1.39943 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99971 * 15.54968 * 7 2 1 9 9 C 1.41392 * 120.00455 * 195.54403 * 7 2 1 10 10 C 1.40569 * 120.07643 * 28.50123 * 9 7 2 11 11 C 1.37603 * 119.53797 * 180.02562 * 10 9 7 12 12 C 1.38439 * 120.14647 * 0.10117 * 11 10 9 13 13 C 1.39143 * 120.91286 * 359.94066 * 12 11 10 14 14 C 1.37253 * 119.86418 * 359.56413 * 13 12 11 15 15 C 1.50682 * 121.80456 * 180.82975 * 14 13 12 16 16 C 1.52901 * 109.97624 * 343.09178 * 15 14 13 17 17 N 1.47164 * 108.46118 * 50.32780 * 16 15 14 18 18 C 1.46904 * 110.99550 * 165.54670 * 17 16 15 19 19 C 1.53004 * 109.46587 * 170.00462 * 18 17 16 20 20 H 1.09000 * 109.46936 * 304.99794 * 19 18 17 21 21 O 1.42897 * 109.47386 * 65.00423 * 19 18 17 22 22 C 1.53005 * 109.46781 * 185.00177 * 19 18 17 23 23 C 1.52995 * 109.46972 * 174.99569 * 22 19 18 24 24 O 1.42904 * 110.45757 * 66.15319 * 23 22 19 25 25 C 1.54510 * 110.51127 * 188.90138 * 23 22 19 26 26 C 1.54487 * 104.06063 * 118.64705 * 25 23 22 27 27 O 1.44423 * 104.80107 * 23.98185 * 26 25 23 28 28 C 1.44423 * 105.27660 * 319.48558 * 27 26 25 29 29 C 1.46928 * 109.96771 * 288.67449 * 17 16 15 30 30 H 0.97006 * 120.00050 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.23343 * 0.04454 * 10 9 7 32 32 H 1.08003 * 119.92747 * 180.02562 * 11 10 9 33 33 H 1.07994 * 119.54027 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.38670 * 103.24674 * 15 14 13 35 35 H 1.09004 * 109.38598 * 223.03782 * 15 14 13 36 36 H 1.08998 * 109.63226 * 170.02431 * 16 15 14 37 37 H 1.09000 * 109.63303 * 290.43097 * 16 15 14 38 38 H 1.08998 * 109.47455 * 289.99855 * 18 17 16 39 39 H 1.08993 * 109.47311 * 50.00464 * 18 17 16 40 40 H 0.96701 * 114.00177 * 59.99863 * 21 19 18 41 41 H 1.08994 * 109.47186 * 294.99878 * 22 19 18 42 42 H 1.09007 * 109.46929 * 54.99756 * 22 19 18 43 43 H 0.96695 * 113.99972 * 179.97438 * 24 23 22 44 44 H 1.08994 * 110.51561 * 237.29036 * 25 23 22 45 45 H 1.09004 * 110.51337 * 0.02562 * 25 23 22 46 46 H 1.08999 * 110.37199 * 265.14862 * 26 25 23 47 47 H 1.09001 * 110.46277 * 142.86184 * 26 25 23 48 48 H 1.09003 * 110.37195 * 281.68434 * 28 27 26 49 49 H 1.08996 * 110.37230 * 159.34155 * 28 27 26 50 50 H 1.09003 * 109.82510 * 292.44439 * 29 17 16 51 51 H 1.09002 * 108.81309 * 172.93011 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3955 2.1010 1.3958 5 1 3.5838 1.4148 -0.6037 6 1 1.4900 2.6236 -0.7922 7 6 2.0079 -1.2119 0.0005 8 1 1.4976 -2.1303 -0.2498 9 6 3.3831 -1.2343 0.3287 10 6 3.9167 -0.2636 1.1942 11 6 5.2566 -0.2955 1.5056 12 6 6.0723 -1.2762 0.9677 13 6 5.5575 -2.2424 0.1090 14 6 4.2217 -2.2346 -0.2065 15 6 3.6146 -3.2706 -1.1167 16 6 4.7144 -3.9817 -1.9057 17 7 5.7492 -4.4316 -0.9610 18 6 6.6500 -5.4056 -1.5916 19 6 7.8477 -5.6609 -0.6743 20 1 8.3307 -4.7134 -0.4353 21 8 7.4002 -6.2849 0.5309 22 6 8.8465 -6.5780 -1.3830 23 6 10.0991 -6.7328 -0.5182 24 8 9.7889 -7.4304 0.6898 25 6 11.2100 -7.4678 -1.3012 26 6 12.3642 -6.4429 -1.3662 27 8 12.1412 -5.5643 -0.2418 28 6 10.7134 -5.3510 -0.2028 29 6 6.4998 -3.2759 -0.4512 30 1 -0.4850 0.8401 -0.0004 31 1 3.2794 0.5016 1.6121 32 1 5.6731 0.4469 2.1703 33 1 7.1226 -1.2917 1.2184 34 1 3.0677 -4.0006 -0.5200 35 1 2.9292 -2.7849 -1.8114 36 1 4.2940 -4.8423 -2.4259 37 1 5.1496 -3.2927 -2.6297 38 1 6.1148 -6.3403 -1.7588 39 1 7.0005 -5.0119 -2.5456 40 1 6.9597 -7.1347 0.3937 41 1 8.3920 -7.5557 -1.5426 42 1 9.1202 -6.1432 -2.3444 43 1 10.5471 -7.5573 1.2764 44 1 11.5249 -8.3640 -0.7669 45 1 10.8671 -7.7204 -2.3045 46 1 12.3217 -5.8823 -2.3001 47 1 13.3264 -6.9459 -1.2699 48 1 10.4177 -4.6230 -0.9582 49 1 10.4066 -5.0167 0.7882 50 1 7.0846 -2.8307 -1.2562 51 1 7.1728 -3.6138 0.3369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931332959.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:36 Heat of formation + Delta-G solvation = -144.676075 kcal Electronic energy + Delta-G solvation = -31507.768818 eV Core-core repulsion = 27370.355661 eV Total energy + Delta-G solvation = -4137.413157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.22783 -40.67541 -38.95425 -37.38902 -36.58780 -35.52141 -33.76145 -33.23492 -32.55729 -31.21264 -30.54352 -29.05184 -26.98797 -26.76763 -25.43639 -24.01297 -23.53703 -22.34941 -21.92111 -21.32468 -20.33666 -18.96634 -18.31247 -17.82955 -17.51851 -17.07703 -16.91924 -16.37864 -16.32282 -16.20563 -15.89427 -15.70655 -15.37314 -15.22769 -14.94997 -14.80921 -14.46559 -14.33472 -14.12350 -14.08235 -13.65250 -13.51232 -13.40894 -13.08114 -12.92515 -12.78246 -12.62321 -12.50509 -12.47116 -12.43622 -12.12428 -12.00056 -11.86546 -11.73984 -11.59381 -11.43933 -11.27531 -11.11665 -10.89329 -10.59991 -10.38578 -9.43154 -9.22113 -9.02725 -8.87405 -6.45474 0.81242 0.85539 1.24745 1.39081 1.47004 2.11881 2.60682 2.85122 2.98947 3.29775 3.47875 3.50642 3.61623 3.75679 3.84450 3.95521 4.03221 4.08977 4.17085 4.20609 4.28077 4.35768 4.39555 4.41558 4.50350 4.54734 4.61602 4.62802 4.70822 4.73276 4.75908 4.79159 4.81349 4.84451 4.87618 5.01768 5.05237 5.08555 5.09530 5.18288 5.24777 5.26856 5.34854 5.71584 5.76662 5.86105 5.94033 6.05239 6.14224 6.17156 6.33926 6.48567 6.80601 6.84735 6.89488 7.07500 8.20346 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.002442 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.384688 B =11462.029770 C =12108.895386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.046 3.954 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.282 1.282 7 C -0.470 4.470 8 H 0.063 0.937 9 C 0.068 3.932 10 C -0.263 4.263 11 C -0.089 4.089 12 C -0.227 4.227 13 C -0.056 4.056 14 C -0.171 4.171 15 C -0.048 4.048 16 C 0.063 3.937 17 N -0.531 5.531 18 C 0.021 3.979 19 C 0.110 3.890 20 H 0.088 0.912 21 O -0.553 6.553 22 C -0.128 4.128 23 C 0.113 3.887 24 O -0.550 6.550 25 C -0.178 4.178 26 C 0.035 3.965 27 O -0.399 6.399 28 C 0.013 3.987 29 C 0.106 3.894 30 H 0.292 0.708 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.035 0.965 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.378 0.622 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.383 0.617 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.105 0.895 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.048 0.952 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.552 -14.263 -7.077 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.179 1.179 6 H -0.209 1.209 7 C -0.500 4.500 8 H 0.081 0.919 9 C 0.065 3.935 10 C -0.282 4.282 11 C -0.107 4.107 12 C -0.246 4.246 13 C -0.056 4.056 14 C -0.172 4.172 15 C -0.085 4.085 16 C -0.065 4.065 17 N -0.256 5.256 18 C -0.107 4.107 19 C 0.050 3.950 20 H 0.106 0.894 21 O -0.358 6.358 22 C -0.166 4.166 23 C 0.072 3.928 24 O -0.357 6.357 25 C -0.216 4.216 26 C -0.041 4.041 27 O -0.319 6.319 28 C -0.064 4.064 29 C -0.021 4.021 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.226 0.774 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.123 0.877 48 H 0.091 0.909 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.854 -13.814 -6.555 26.672 hybrid contribution -0.013 0.881 -0.492 1.009 sum 21.841 -12.933 -7.047 26.343 Atomic orbital electron populations 1.69709 1.08945 1.31159 1.38107 1.26772 0.95334 1.04027 0.90635 0.85471 0.79432 0.76889 0.78928 1.19134 1.17863 1.20886 1.19446 0.93266 0.95171 1.42120 0.91933 1.17918 0.92877 0.92191 0.90496 1.21052 0.96608 1.04272 1.06255 1.20843 0.93077 0.98157 0.98636 1.20718 0.99471 0.99205 1.05243 1.19562 0.93353 0.95771 0.96923 1.19720 0.93017 1.00506 1.04000 1.20094 0.96848 0.95023 0.96542 1.22119 0.92694 0.98752 0.92887 1.62469 1.13782 1.13047 1.36268 1.23031 0.94270 0.96919 0.96431 1.21968 0.91930 0.96029 0.85058 0.89435 1.86631 1.79160 1.39323 1.30702 1.22299 0.94189 1.01904 0.98248 1.22408 0.94549 0.90118 0.85739 1.86631 1.39698 1.77810 1.31530 1.23694 0.95337 0.99463 1.03129 1.23643 0.99886 0.90818 0.89732 1.89152 1.23367 1.68688 1.50667 1.24306 0.80945 0.98032 1.03108 1.20954 0.93861 0.88608 0.98718 0.89809 0.89027 0.86010 0.85827 0.93296 0.92557 0.88943 0.94655 0.89055 0.92787 0.77397 0.89253 0.87724 0.76864 0.89306 0.87963 0.91120 0.87733 0.90918 0.89331 0.93418 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.80 13.93 21.83 0.30 -47.49 16 2 C 0.05 2.54 5.44 85.26 0.46 3.00 16 3 Si 0.97 44.85 24.40 68.60 1.67 46.52 16 4 H -0.27 -11.83 6.68 99.48 0.66 -11.16 16 5 H -0.25 -12.08 6.69 99.48 0.67 -11.41 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.47 -26.78 8.60 23.46 0.20 -26.58 16 8 H 0.06 3.79 7.25 -2.91 -0.02 3.77 16 9 C 0.07 3.57 5.18 -21.24 -0.11 3.46 16 10 C -0.26 -13.10 7.04 22.69 0.16 -12.94 16 11 C -0.09 -3.85 10.02 22.17 0.22 -3.63 16 12 C -0.23 -9.15 9.65 22.54 0.22 -8.93 16 13 C -0.06 -2.30 5.79 -19.89 -0.12 -2.41 16 14 C -0.17 -8.03 5.83 -19.41 -0.11 -8.14 16 15 C -0.05 -1.97 4.95 29.81 0.15 -1.83 16 16 C 0.06 1.96 5.53 86.22 0.48 2.44 16 17 N -0.53 -15.54 4.80 -900.28 -4.32 -19.86 16 18 C 0.02 0.41 4.83 86.30 0.42 0.83 16 19 C 0.11 2.00 2.19 30.60 0.07 2.07 16 20 H 0.09 1.80 4.66 -2.39 -0.01 1.79 16 21 O -0.55 -12.91 11.85 -131.16 -1.55 -14.47 16 22 C -0.13 -1.56 3.99 30.59 0.12 -1.44 16 23 C 0.11 1.54 1.12 -9.78 -0.01 1.53 16 24 O -0.55 -9.17 11.61 -131.16 -1.52 -10.69 16 25 C -0.18 -1.67 6.51 31.61 0.21 -1.46 16 26 C 0.04 0.39 7.63 72.49 0.55 0.94 16 27 O -0.40 -7.29 11.65 -148.98 -1.74 -9.03 16 28 C 0.01 0.22 5.69 72.48 0.41 0.63 16 29 C 0.11 3.37 4.32 85.54 0.37 3.74 16 30 H 0.29 14.77 8.30 -92.70 -0.77 14.00 16 31 H 0.09 4.59 4.32 -2.91 -0.01 4.58 16 32 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.47 7.38 -2.39 -0.02 2.45 16 36 H 0.09 2.38 8.03 -2.39 -0.02 2.36 16 37 H 0.04 1.07 8.05 -2.39 -0.02 1.05 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16 40 H 0.38 7.02 9.05 -74.06 -0.67 6.35 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.38 4.69 9.04 -74.06 -0.67 4.02 16 44 H 0.09 0.78 8.00 -2.39 -0.02 0.76 16 45 H 0.10 0.63 7.73 -2.39 -0.02 0.62 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 1.11 7.45 -2.39 -0.02 1.09 16 49 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 50 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.09 2.75 6.30 -2.39 -0.02 2.74 16 Total: -1.00 -68.92 387.85 -3.93 -72.85 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.46 Total: 30.90 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 3.69 Total: -48.73 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -4.02 Total: -67.36 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -4.81 Total: -34.19 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.67 Total: 46.52 kcal Total: -68.92 -3.93 -72.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931332959.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.825 kcal (2) G-P(sol) polarization free energy of solvation -68.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds