Wall clock time and date at job start Wed Apr 1 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47461 * 269.99896 * 3 2 1 5 5 H 1.48498 * 109.47291 * 30.00377 * 3 2 1 6 6 H 1.48508 * 109.46841 * 149.99906 * 3 2 1 7 7 C 1.37873 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00276 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00133 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47422 * 179.97438 * 9 7 2 11 11 C 1.42892 * 113.99893 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47178 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46701 * 64.99894 * 12 11 10 14 14 C 1.46726 * 110.99859 * 66.04775 * 13 12 11 15 15 C 1.51734 * 108.90212 * 150.26293 * 14 13 12 16 16 C 1.37668 * 120.45029 * 247.79036 * 15 14 13 17 17 C 1.38416 * 119.68620 * 181.08785 * 16 15 14 18 18 C 1.38274 * 120.07844 * 359.97438 * 17 16 15 19 19 C 1.38165 * 120.25154 * 359.41367 * 18 17 16 20 20 C 1.38425 * 118.98363 * 67.69015 * 15 14 13 21 21 O 1.35920 * 120.22391 * 358.05288 * 20 15 14 22 22 C 1.43393 * 115.30148 * 290.63732 * 21 20 15 23 23 C 1.53286 * 108.83645 * 206.54314 * 22 21 20 24 24 C 1.53078 * 109.07487 * 60.68501 * 23 22 21 25 25 O 1.42906 * 109.46266 * 57.76471 * 24 23 22 26 26 C 1.42835 * 114.16463 * 299.08408 * 25 24 23 27 27 C 1.53091 * 109.40733 * 61.00348 * 26 25 24 28 28 C 1.45982 * 111.00393 * 299.93668 * 13 12 11 29 29 H 0.96998 * 120.00059 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46855 * 59.99767 * 9 7 2 31 31 H 1.09003 * 109.46840 * 300.00315 * 9 7 2 32 32 H 1.09005 * 109.47581 * 59.99894 * 11 10 9 33 33 H 1.09000 * 109.47660 * 299.99668 * 11 10 9 34 34 H 1.08996 * 109.46901 * 305.00041 * 12 11 10 35 35 H 1.09003 * 109.46993 * 184.99871 * 12 11 10 36 36 H 1.09002 * 109.58512 * 270.12376 * 14 13 12 37 37 H 1.08996 * 109.58602 * 30.40320 * 14 13 12 38 38 H 1.07995 * 120.13242 * 0.98156 * 16 15 14 39 39 H 1.08004 * 119.96323 * 179.97438 * 17 16 15 40 40 H 1.07998 * 119.87385 * 179.44258 * 18 17 16 41 41 H 1.07994 * 120.14523 * 180.02562 * 19 18 17 42 42 H 1.08998 * 109.53720 * 180.57238 * 23 22 21 43 43 H 1.09004 * 109.53014 * 300.81329 * 23 22 21 44 44 H 1.09004 * 109.47318 * 297.76696 * 24 23 22 45 45 H 1.08998 * 109.47417 * 177.75757 * 24 23 22 46 46 H 1.08994 * 109.48666 * 301.01825 * 26 25 24 47 47 H 1.09004 * 109.47955 * 180.97977 * 26 25 24 48 48 H 1.08996 * 109.54637 * 182.20294 * 27 26 25 49 49 H 1.09000 * 109.62153 * 61.97265 * 27 26 25 50 50 H 1.09003 * 108.64744 * 315.22027 * 28 13 12 51 51 H 1.09003 * 108.64953 * 73.19885 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.4122 -2.6543 -0.0001 12 6 5.8068 -4.1326 0.0004 13 7 5.3673 -4.7570 -1.2546 14 6 6.0953 -4.2018 -2.4012 15 6 6.2023 -5.2660 -3.4775 16 6 7.4242 -5.8129 -3.7989 17 6 7.5068 -6.7662 -4.7990 18 6 6.3664 -7.1666 -5.4706 19 6 5.1381 -6.6272 -5.1398 20 6 5.0529 -5.6791 -4.1289 21 8 3.8449 -5.1647 -3.7775 22 6 3.3610 -5.5629 -2.4877 23 6 1.8296 -5.4974 -2.4918 24 6 1.2906 -6.4568 -3.5559 25 8 1.7574 -7.7799 -3.2844 26 6 3.1793 -7.9140 -3.3047 27 6 3.7907 -7.0126 -2.2289 28 6 3.9188 -4.6605 -1.4079 29 1 -0.4850 0.8400 0.0004 30 1 3.8745 -0.6809 0.8905 31 1 3.8752 -0.6797 -0.8895 32 1 5.8151 -2.1708 0.8899 33 1 5.8151 -2.1708 -0.8901 34 1 5.3310 -4.6353 0.8424 35 1 6.8896 -4.2196 0.0899 36 1 5.5568 -3.3389 -2.7928 37 1 7.0939 -3.8978 -2.0875 38 1 8.3140 -5.4980 -3.2742 39 1 8.4631 -7.1979 -5.0551 40 1 6.4359 -7.9041 -6.2565 41 1 4.2485 -6.9415 -5.6652 42 1 1.4497 -5.7884 -1.5125 43 1 1.5089 -4.4812 -2.7213 44 1 1.6407 -6.1426 -4.5393 45 1 0.2009 -6.4451 -3.5373 46 1 3.5583 -7.6201 -4.2835 47 1 3.4495 -8.9512 -3.1066 48 1 4.8776 -7.0835 -2.2683 49 1 3.4402 -7.3268 -1.2457 50 1 3.4498 -4.9211 -0.4591 51 1 3.6620 -3.6294 -1.6510 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932040266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:32 Heat of formation + Delta-G solvation = -80.809152 kcal Electronic energy + Delta-G solvation = -33298.264744 eV Core-core repulsion = 29163.621065 eV Total energy + Delta-G solvation = -4134.643679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.34447 -38.75049 -38.23231 -36.93345 -35.88115 -33.17703 -32.72768 -31.83717 -31.15620 -29.83594 -29.26151 -27.80728 -26.78231 -25.21769 -23.75401 -22.83788 -22.44896 -21.91043 -21.56248 -20.36866 -19.90870 -17.47945 -16.93025 -16.70406 -16.22531 -16.02308 -15.87006 -15.62638 -15.35711 -15.29078 -14.80184 -14.70529 -14.39668 -14.26713 -13.93042 -13.69903 -13.32721 -13.12850 -12.89628 -12.67831 -12.49933 -12.31752 -12.19567 -11.99327 -11.87038 -11.79279 -11.57431 -11.27127 -11.18039 -11.11317 -11.03531 -10.91822 -10.76359 -10.39079 -10.25879 -10.04589 -9.93230 -9.31568 -9.22882 -8.98487 -8.85061 -8.58104 -8.43737 -7.97028 -6.18217 -4.17703 1.16840 1.26298 3.19184 3.26748 3.27159 3.36162 3.77710 3.97770 4.14765 4.29286 4.49181 4.68480 4.76607 4.83394 4.86707 4.94982 5.01565 5.12582 5.13371 5.17235 5.28955 5.32901 5.34662 5.39035 5.41031 5.48942 5.59676 5.65148 5.72521 5.76673 5.77656 5.79141 5.85302 5.91835 5.92428 6.01387 6.12231 6.16926 6.21550 6.27831 6.34676 6.39493 6.49490 6.51920 6.61712 6.73188 6.90265 7.17251 7.23010 7.28245 7.51672 7.61834 7.88407 8.55775 8.91323 9.40981 10.94477 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.003781 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.964052 B = 7403.995104 C = 8634.621247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.083 0.917 9 C 0.167 3.833 10 O -0.374 6.374 11 C 0.019 3.981 12 C 0.066 3.934 13 N -0.536 5.536 14 C 0.094 3.906 15 C -0.101 4.101 16 C -0.094 4.094 17 C -0.134 4.134 18 C -0.110 4.110 19 C -0.141 4.141 20 C 0.121 3.879 21 O -0.323 6.323 22 C 0.130 3.870 23 C -0.143 4.143 24 C 0.065 3.935 25 O -0.386 6.386 26 C 0.047 3.953 27 C -0.172 4.172 28 C 0.044 3.956 29 H 0.267 0.733 30 H 0.002 0.998 31 H -0.005 1.005 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.188 -14.924 -8.266 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.293 6.293 11 C -0.061 4.061 12 C -0.062 4.062 13 N -0.259 5.259 14 C -0.034 4.034 15 C -0.102 4.102 16 C -0.113 4.113 17 C -0.152 4.152 18 C -0.128 4.128 19 C -0.159 4.159 20 C 0.076 3.924 21 O -0.241 6.241 22 C 0.093 3.907 23 C -0.181 4.181 24 C -0.012 4.012 25 O -0.305 6.305 26 C -0.030 4.030 27 C -0.209 4.209 28 C -0.084 4.084 29 H 0.077 0.923 30 H 0.019 0.981 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.099 0.901 50 H 0.107 0.893 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.736 -15.459 -8.275 22.274 hybrid contribution 0.735 2.357 0.121 2.472 sum 14.471 -13.102 -8.154 21.156 Atomic orbital electron populations 1.69864 1.06001 1.27132 1.50068 1.24745 0.94772 0.98674 0.94577 0.86890 0.80335 0.83978 0.78770 1.19959 1.20720 1.19248 1.20828 0.88032 0.95261 1.51496 0.89920 1.20606 0.96305 0.79656 0.94217 1.88003 1.17159 1.29395 1.94725 1.23130 0.85516 0.97800 0.99606 1.22296 1.00016 0.91612 0.92260 1.61077 1.06110 1.57116 1.01596 1.21182 0.98900 0.93779 0.89530 1.20273 0.93092 0.98757 0.98051 1.20790 0.96596 0.96514 0.97358 1.21105 0.98402 0.98629 0.97110 1.20954 0.92023 1.00033 0.99791 1.21265 0.98333 0.96311 1.00021 1.18419 0.85356 0.93361 0.95237 1.86359 1.32047 1.69630 1.36037 1.21779 0.93876 0.93459 0.81550 1.22243 0.92152 1.02252 1.01473 1.22537 0.99301 0.81992 0.97350 1.87869 1.21216 1.29130 1.92256 1.22926 0.81314 0.99740 0.98973 1.22797 1.02743 0.94678 1.00731 1.22171 0.86600 1.00888 0.98740 0.92317 0.98072 0.98683 0.93887 0.94474 0.89706 0.89826 0.92429 0.90449 0.85882 0.86092 0.85931 0.85392 0.89077 0.88983 0.92655 0.88679 0.91746 0.89472 0.89256 0.90109 0.89318 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.80 9.99 -34.44 -0.34 -15.15 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.17 4.09 4.76 36.01 0.17 4.26 16 10 O -0.37 -7.95 6.87 -35.23 -0.24 -8.20 16 11 C 0.02 0.30 5.83 37.16 0.22 0.52 16 12 C 0.07 0.88 5.74 -3.82 -0.02 0.85 16 13 N -0.54 -7.55 3.90 -237.38 -0.93 -8.47 16 14 C 0.09 1.26 4.20 -4.56 -0.02 1.24 16 15 C -0.10 -1.29 4.74 -104.25 -0.49 -1.78 16 16 C -0.09 -0.99 9.70 -39.72 -0.39 -1.37 16 17 C -0.13 -1.26 10.05 -39.50 -0.40 -1.65 16 18 C -0.11 -1.05 10.03 -39.59 -0.40 -1.45 16 19 C -0.14 -1.62 7.81 -39.38 -0.31 -1.93 16 20 C 0.12 1.64 3.83 -39.29 -0.15 1.49 16 21 O -0.32 -5.02 8.61 -19.49 -0.17 -5.19 16 22 C 0.13 1.94 0.72 -91.08 -0.07 1.87 16 23 C -0.14 -2.14 5.16 -26.54 -0.14 -2.27 16 24 C 0.06 0.87 6.67 37.20 0.25 1.11 16 25 O -0.39 -5.41 10.76 -35.23 -0.38 -5.79 16 26 C 0.05 0.58 6.47 37.20 0.24 0.82 16 27 C -0.17 -2.27 4.25 -26.47 -0.11 -2.39 16 28 C 0.04 0.71 2.63 -5.14 -0.01 0.70 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16 31 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.60 7.08 -51.93 -0.37 0.23 16 34 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 35 H 0.08 0.89 7.90 -51.93 -0.41 0.48 16 36 H 0.06 0.91 7.52 -51.93 -0.39 0.52 16 37 H 0.08 0.88 7.45 -51.93 -0.39 0.49 16 38 H 0.12 1.06 8.00 -52.49 -0.42 0.64 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.37 6.85 -52.49 -0.36 1.01 16 42 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 45 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.06 0.77 3.60 -51.93 -0.19 0.59 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 1.22 6.02 -51.93 -0.31 0.90 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.09 1.54 7.73 -51.93 -0.40 1.14 16 51 H 0.08 1.61 5.86 -51.93 -0.30 1.31 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -31.08 380.23 -10.04 -41.12 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.10 Total: 3.58 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.07 Total: -13.09 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.15 Total: -34.63 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.79 Total: -19.18 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.08 -10.04 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932040266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.689 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds