Wall clock time and date at job start Wed Apr 1 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47461 * 269.99896 * 3 2 1 5 5 H 1.48498 * 109.47291 * 30.00377 * 3 2 1 6 6 H 1.48508 * 109.46841 * 149.99906 * 3 2 1 7 7 C 1.37873 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00276 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00133 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47422 * 179.97438 * 9 7 2 11 11 C 1.42892 * 113.99893 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47178 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46701 * 64.99894 * 12 11 10 14 14 C 1.46726 * 110.99859 * 66.04775 * 13 12 11 15 15 C 1.51734 * 108.90212 * 150.26293 * 14 13 12 16 16 C 1.37668 * 120.45029 * 247.79036 * 15 14 13 17 17 C 1.38416 * 119.68620 * 181.08785 * 16 15 14 18 18 C 1.38274 * 120.07844 * 359.97438 * 17 16 15 19 19 C 1.38165 * 120.25154 * 359.41367 * 18 17 16 20 20 C 1.38425 * 118.98363 * 67.69015 * 15 14 13 21 21 O 1.35920 * 120.22391 * 358.05288 * 20 15 14 22 22 C 1.43393 * 115.30148 * 290.63732 * 21 20 15 23 23 C 1.53286 * 108.83645 * 206.54314 * 22 21 20 24 24 C 1.53078 * 109.07487 * 60.68501 * 23 22 21 25 25 O 1.42906 * 109.46266 * 57.76471 * 24 23 22 26 26 C 1.42835 * 114.16463 * 299.08408 * 25 24 23 27 27 C 1.53091 * 109.40733 * 61.00348 * 26 25 24 28 28 C 1.45982 * 111.00393 * 299.93668 * 13 12 11 29 29 H 0.96998 * 120.00059 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46855 * 59.99767 * 9 7 2 31 31 H 1.09003 * 109.46840 * 300.00315 * 9 7 2 32 32 H 1.09005 * 109.47581 * 59.99894 * 11 10 9 33 33 H 1.09000 * 109.47660 * 299.99668 * 11 10 9 34 34 H 1.08996 * 109.46901 * 305.00041 * 12 11 10 35 35 H 1.09003 * 109.46993 * 184.99871 * 12 11 10 36 36 H 1.09002 * 109.58512 * 270.12376 * 14 13 12 37 37 H 1.08996 * 109.58602 * 30.40320 * 14 13 12 38 38 H 1.07995 * 120.13242 * 0.98156 * 16 15 14 39 39 H 1.08004 * 119.96323 * 179.97438 * 17 16 15 40 40 H 1.07998 * 119.87385 * 179.44258 * 18 17 16 41 41 H 1.07994 * 120.14523 * 180.02562 * 19 18 17 42 42 H 1.08998 * 109.53720 * 180.57238 * 23 22 21 43 43 H 1.09004 * 109.53014 * 300.81329 * 23 22 21 44 44 H 1.09004 * 109.47318 * 297.76696 * 24 23 22 45 45 H 1.08998 * 109.47417 * 177.75757 * 24 23 22 46 46 H 1.08994 * 109.48666 * 301.01825 * 26 25 24 47 47 H 1.09004 * 109.47955 * 180.97977 * 26 25 24 48 48 H 1.08996 * 109.54637 * 182.20294 * 27 26 25 49 49 H 1.09000 * 109.62153 * 61.97265 * 27 26 25 50 50 H 1.09003 * 108.64744 * 315.22027 * 28 13 12 51 51 H 1.09003 * 108.64953 * 73.19885 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.4122 -2.6543 -0.0001 12 6 5.8068 -4.1326 0.0004 13 7 5.3673 -4.7570 -1.2546 14 6 6.0953 -4.2018 -2.4012 15 6 6.2023 -5.2660 -3.4775 16 6 7.4242 -5.8129 -3.7989 17 6 7.5068 -6.7662 -4.7990 18 6 6.3664 -7.1666 -5.4706 19 6 5.1381 -6.6272 -5.1398 20 6 5.0529 -5.6791 -4.1289 21 8 3.8449 -5.1647 -3.7775 22 6 3.3610 -5.5629 -2.4877 23 6 1.8296 -5.4974 -2.4918 24 6 1.2906 -6.4568 -3.5559 25 8 1.7574 -7.7799 -3.2844 26 6 3.1793 -7.9140 -3.3047 27 6 3.7907 -7.0126 -2.2289 28 6 3.9188 -4.6605 -1.4079 29 1 -0.4850 0.8400 0.0004 30 1 3.8745 -0.6809 0.8905 31 1 3.8752 -0.6797 -0.8895 32 1 5.8151 -2.1708 0.8899 33 1 5.8151 -2.1708 -0.8901 34 1 5.3310 -4.6353 0.8424 35 1 6.8896 -4.2196 0.0899 36 1 5.5568 -3.3389 -2.7928 37 1 7.0939 -3.8978 -2.0875 38 1 8.3140 -5.4980 -3.2742 39 1 8.4631 -7.1979 -5.0551 40 1 6.4359 -7.9041 -6.2565 41 1 4.2485 -6.9415 -5.6652 42 1 1.4497 -5.7884 -1.5125 43 1 1.5089 -4.4812 -2.7213 44 1 1.6407 -6.1426 -4.5393 45 1 0.2009 -6.4451 -3.5373 46 1 3.5583 -7.6201 -4.2835 47 1 3.4495 -8.9512 -3.1066 48 1 4.8776 -7.0835 -2.2683 49 1 3.4402 -7.3268 -1.2457 50 1 3.4498 -4.9211 -0.4591 51 1 3.6620 -3.6294 -1.6510 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932040266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:35:31 Heat of formation + Delta-G solvation = -101.142443 kcal Electronic energy + Delta-G solvation = -33299.146461 eV Core-core repulsion = 29163.621065 eV Total energy + Delta-G solvation = -4135.525397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.41128 -39.77317 -39.52024 -38.04771 -37.29404 -34.88796 -34.27517 -32.85609 -32.25536 -30.89624 -30.60517 -29.54686 -27.92905 -26.35297 -24.83116 -24.22802 -23.74662 -23.41073 -22.56750 -21.52540 -20.96588 -19.10502 -18.47123 -17.87616 -17.56844 -17.19374 -17.00660 -16.85509 -16.63100 -16.46702 -16.28385 -15.75242 -15.72870 -15.52108 -15.14049 -14.94331 -14.71326 -14.45989 -14.25028 -13.94571 -13.64685 -13.55924 -13.51986 -13.20818 -13.05462 -12.94020 -12.80425 -12.71227 -12.54012 -12.47388 -12.34420 -12.21408 -12.11959 -11.88540 -11.45593 -11.42183 -11.34866 -11.11284 -10.97139 -10.50447 -10.29439 -9.71441 -9.36081 -9.20598 -8.40973 -6.48120 0.30162 0.44198 1.27295 1.29296 1.39706 2.23648 2.44056 2.66346 2.90367 2.91555 3.02708 3.14883 3.68348 3.72296 3.78304 3.83109 3.91831 3.98762 4.12124 4.14644 4.17772 4.25197 4.31961 4.36029 4.37088 4.45159 4.51731 4.53789 4.58868 4.60989 4.66421 4.70872 4.73485 4.73763 4.77418 4.81259 4.89973 4.99572 5.00251 5.09290 5.10474 5.17854 5.20682 5.39874 5.47989 5.59868 5.64394 5.86791 5.91578 5.99574 6.07124 6.19480 6.54854 6.59137 6.66781 7.15807 8.75657 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.003781 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.964052 B = 7403.995104 C = 8634.621247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.538 4.538 8 H 0.034 0.966 9 C 0.180 3.820 10 O -0.391 6.391 11 C 0.011 3.989 12 C 0.069 3.931 13 N -0.527 5.527 14 C 0.096 3.904 15 C -0.118 4.118 16 C -0.093 4.093 17 C -0.126 4.126 18 C -0.104 4.104 19 C -0.148 4.148 20 C 0.089 3.911 21 O -0.343 6.343 22 C 0.131 3.869 23 C -0.145 4.145 24 C 0.072 3.928 25 O -0.394 6.394 26 C 0.046 3.954 27 C -0.158 4.158 28 C 0.060 3.940 29 H 0.272 0.728 30 H 0.009 0.991 31 H -0.001 1.001 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.023 0.977 37 H 0.105 0.895 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.175 -15.834 -9.152 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.576 4.576 8 H 0.052 0.948 9 C 0.104 3.896 10 O -0.311 6.311 11 C -0.067 4.067 12 C -0.058 4.058 13 N -0.250 5.250 14 C -0.031 4.031 15 C -0.119 4.119 16 C -0.111 4.111 17 C -0.144 4.144 18 C -0.122 4.122 19 C -0.166 4.166 20 C 0.045 3.955 21 O -0.260 6.260 22 C 0.094 3.906 23 C -0.184 4.184 24 C -0.004 4.004 25 O -0.313 6.313 26 C -0.030 4.030 27 C -0.195 4.195 28 C -0.069 4.069 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.144 0.856 36 H 0.041 0.959 37 H 0.123 0.877 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.126 0.874 46 H 0.090 0.910 47 H 0.127 0.873 48 H 0.110 0.890 49 H 0.093 0.907 50 H 0.086 0.914 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.747 -16.394 -9.163 25.840 hybrid contribution -0.462 2.524 0.343 2.589 sum 17.285 -13.870 -8.821 23.853 Atomic orbital electron populations 1.70018 1.08058 1.28640 1.51047 1.25746 0.95724 1.03066 0.93645 0.85708 0.79526 0.78218 0.79508 1.18913 1.19653 1.17154 1.21075 0.90610 0.93815 1.52050 0.94773 1.20252 0.93538 0.81432 0.94344 1.88012 1.20704 1.27497 1.94874 1.23469 0.82564 1.00301 1.00412 1.22461 1.02303 0.89284 0.91800 1.61152 1.04466 1.56914 1.02432 1.21190 0.99358 0.93124 0.89417 1.20304 0.93984 0.99319 0.98340 1.21086 0.96232 0.96217 0.97580 1.21517 0.99662 0.97457 0.95782 1.21329 0.91163 0.99757 0.99957 1.21382 0.99589 0.96103 0.99526 1.18749 0.84785 0.95094 0.96863 1.86336 1.33523 1.70464 1.35727 1.21637 0.93256 0.94314 0.81408 1.22220 0.93162 1.01200 1.01780 1.22485 0.99959 0.81501 0.96472 1.87855 1.22319 1.28894 1.92261 1.23075 0.80367 1.00628 0.98951 1.22650 1.02772 0.93350 1.00764 1.21890 0.88295 0.98546 0.98134 0.91857 0.97339 0.98381 0.92339 0.94121 0.90055 0.85644 0.95897 0.87703 0.83560 0.82831 0.83021 0.85191 0.89861 0.91780 0.92536 0.87438 0.91047 0.87331 0.89017 0.90725 0.91447 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 2 C 0.02 0.98 5.47 84.65 0.46 1.45 16 3 Si 0.95 43.87 27.47 68.60 1.88 45.76 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.54 -32.50 9.99 25.60 0.26 -32.24 16 8 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 9 C 0.18 9.02 4.76 71.24 0.34 9.36 16 10 O -0.39 -17.44 6.87 -148.98 -1.02 -18.47 16 11 C 0.01 0.35 5.83 71.98 0.42 0.77 16 12 C 0.07 1.76 5.74 86.31 0.50 2.25 16 13 N -0.53 -14.88 3.90 -904.94 -3.53 -18.40 16 14 C 0.10 2.54 4.20 85.92 0.36 2.90 16 15 C -0.12 -2.87 4.74 -19.62 -0.09 -2.96 16 16 C -0.09 -1.63 9.70 22.18 0.22 -1.42 16 17 C -0.13 -1.81 10.05 22.32 0.22 -1.59 16 18 C -0.10 -1.62 10.03 22.26 0.22 -1.40 16 19 C -0.15 -3.16 7.81 22.40 0.17 -2.98 16 20 C 0.09 2.38 3.83 22.46 0.09 2.47 16 21 O -0.34 -11.22 8.61 -92.65 -0.80 -12.02 16 22 C 0.13 4.17 0.72 -11.09 -0.01 4.16 16 23 C -0.15 -4.81 5.16 30.72 0.16 -4.66 16 24 C 0.07 2.04 6.67 72.01 0.48 2.52 16 25 O -0.39 -11.04 10.76 -148.98 -1.60 -12.65 16 26 C 0.05 1.10 6.47 72.01 0.47 1.56 16 27 C -0.16 -4.21 4.25 30.76 0.13 -4.08 16 28 C 0.06 2.11 2.63 85.95 0.23 2.33 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 31 H 0.00 -0.07 7.57 -2.39 -0.02 -0.09 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.04 1.28 7.08 -2.39 -0.02 1.27 16 34 H 0.08 2.15 8.06 -2.39 -0.02 2.13 16 35 H 0.13 2.21 7.90 -2.39 -0.02 2.19 16 36 H 0.02 0.76 7.52 -2.39 -0.02 0.74 16 37 H 0.10 2.11 7.45 -2.39 -0.02 2.10 16 38 H 0.15 1.84 8.00 -2.91 -0.02 1.82 16 39 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.13 2.63 6.85 -2.91 -0.02 2.61 16 42 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.06 1.57 7.72 -2.39 -0.02 1.55 16 45 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.07 1.64 3.60 -2.39 -0.01 1.64 16 47 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.09 2.42 6.02 -2.39 -0.01 2.41 16 49 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.07 2.58 7.73 -2.39 -0.02 2.56 16 51 H 0.04 1.57 5.86 -2.39 -0.01 1.55 16 Total: -1.00 -72.59 380.23 0.71 -71.87 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.86 Total: 24.16 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 4.62 Total: -21.55 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -3.23 Total: -77.11 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -3.42 Total: -43.13 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -72.59 0.71 -71.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932040266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.268 kcal (2) G-P(sol) polarization free energy of solvation -72.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds