Wall clock time and date at job start Wed Apr 1 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35513 * 117.00006 * 2 1 4 4 C 1.39639 * 120.49402 * 180.02562 * 3 2 1 5 5 C 1.39143 * 118.20631 * 180.02562 * 4 3 2 6 6 C 1.48449 * 120.51820 * 179.97438 * 5 4 3 7 7 O 1.21484 * 119.99932 * 351.64574 * 6 5 4 8 8 N 1.34779 * 120.00048 * 171.64244 * 6 5 4 9 9 C 1.47072 * 120.88224 * 352.81365 * 8 6 5 10 10 C 1.53239 * 108.52485 * 231.16112 * 9 8 6 11 11 N 1.46904 * 109.33722 * 306.17162 * 10 9 8 12 12 C 1.46896 * 110.99763 * 187.25081 * 11 10 9 13 13 C 1.53951 * 113.74254 * 273.73786 * 12 11 10 14 14 N 1.47809 * 86.04048 * 222.08678 * 13 12 11 15 15 C 1.36936 * 134.45893 * 204.64472 * 14 13 12 16 16 H 1.08003 * 120.00113 * 179.86161 * 15 14 13 17 17 C 1.38806 * 119.99764 * 359.86963 * 15 14 13 18 18 N 1.31621 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99964 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47125 * 89.99760 * 19 17 15 21 21 H 1.48498 * 109.46773 * 209.99952 * 19 17 15 22 22 H 1.48495 * 109.46657 * 329.99707 * 19 17 15 23 23 C 1.47586 * 91.04669 * 24.55073 * 14 13 12 24 24 C 1.46904 * 111.26827 * 63.10299 * 11 10 9 25 25 C 1.47085 * 120.87637 * 172.78783 * 8 6 5 26 26 N 1.33282 * 118.96844 * 0.27265 * 5 4 3 27 27 C 1.31529 * 120.88247 * 359.43860 * 26 5 4 28 28 N 1.31896 * 121.98558 * 0.57798 * 27 26 5 29 29 H 1.08997 * 109.47705 * 300.00589 * 1 2 3 30 30 H 1.09005 * 109.46919 * 60.00396 * 1 2 3 31 31 H 1.08995 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.89694 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.62705 * 111.44850 * 9 8 6 34 34 H 1.09004 * 109.63121 * 350.87698 * 9 8 6 35 35 H 1.08993 * 109.49511 * 186.20982 * 10 9 8 36 36 H 1.08998 * 109.49010 * 66.12824 * 10 9 8 37 37 H 1.08996 * 112.94828 * 45.33636 * 12 11 10 38 38 H 1.09003 * 113.76771 * 336.35808 * 13 12 11 39 39 H 1.09008 * 113.76634 * 107.74566 * 13 12 11 40 40 H 0.97002 * 119.99787 * 180.02562 * 18 17 15 41 41 H 1.09005 * 113.76442 * 221.15074 * 23 14 13 42 42 H 1.08994 * 113.76920 * 89.76239 * 23 14 13 43 43 H 1.08995 * 109.49549 * 56.85399 * 24 11 10 44 44 H 1.09000 * 109.49232 * 176.93401 * 24 11 10 45 45 H 1.08998 * 109.62824 * 248.54932 * 25 8 6 46 46 H 1.09000 * 109.63098 * 9.13644 * 25 8 6 47 47 H 1.07996 * 119.01052 * 180.27147 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2925 -0.0005 5 6 4.0197 2.5565 0.0000 6 6 5.4966 2.7067 0.0001 7 8 6.2062 1.7325 0.1525 8 7 6.0502 3.9238 -0.1690 9 6 5.2210 5.0895 -0.5107 10 6 5.8354 5.7831 -1.7312 11 7 7.2477 6.0834 -1.4603 12 6 7.8277 6.9001 -2.5348 13 6 8.3714 6.0753 -3.7155 14 7 9.5209 7.0045 -3.7021 15 6 10.4341 7.4139 -4.6368 16 1 11.1998 8.1264 -4.3676 17 6 10.3754 6.9134 -5.9301 18 7 9.4424 6.0449 -6.2580 19 14 11.6207 7.4725 -7.2054 20 1 12.7995 6.5699 -7.1751 21 1 11.0004 7.4316 -8.5540 22 1 12.0520 8.8604 -6.9007 23 6 9.2877 7.3153 -2.2783 24 6 8.0244 4.8533 -1.2562 25 6 7.4996 4.1216 -0.0162 26 7 3.2303 3.6304 0.0066 27 6 1.9209 3.5059 0.0014 28 7 1.3314 2.3260 0.0009 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0480 0.4013 -0.0005 33 1 5.1979 5.7817 0.3309 34 1 4.2084 4.7620 -0.7468 35 1 5.2983 6.7101 -1.9314 36 1 5.7631 5.1259 -2.5977 37 1 7.1831 7.7258 -2.8361 38 1 8.6320 5.0501 -3.4522 39 1 7.7611 6.1425 -4.6163 40 1 9.4017 5.6948 -7.1618 41 1 9.4079 8.3707 -2.0337 42 1 9.8182 6.6553 -1.5920 43 1 7.9216 4.2091 -2.1293 44 1 9.0748 5.1062 -1.1119 45 1 7.6956 4.7209 0.8730 46 1 7.9937 3.1543 0.0745 47 1 1.3101 4.3965 0.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941411338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:07 Heat of formation + Delta-G solvation = 85.414880 kcal Electronic energy + Delta-G solvation = -30564.882254 eV Core-core repulsion = 26366.198998 eV Total energy + Delta-G solvation = -4198.683256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87474 -40.21220 -39.08059 -38.61170 -36.67585 -34.22489 -33.45941 -32.28708 -31.82623 -30.99153 -28.44189 -27.94331 -26.42868 -25.20234 -24.82918 -24.68690 -23.49893 -22.63524 -21.55962 -20.20876 -18.81978 -18.79551 -18.02579 -16.83226 -16.77827 -16.51729 -16.30282 -15.98649 -15.63446 -15.40826 -15.33280 -14.90106 -14.78194 -14.62937 -14.40657 -14.10595 -13.88792 -13.67467 -13.05302 -12.70424 -12.43786 -12.24835 -12.13849 -11.92321 -11.72561 -11.59941 -11.38791 -11.07076 -10.94150 -10.81154 -10.76939 -10.65057 -10.61242 -10.55497 -10.15011 -9.92770 -9.67673 -9.50469 -9.25044 -8.80681 -8.70751 -7.78353 -6.84342 -5.75989 -3.08527 0.09034 0.52054 2.23074 2.48013 2.79128 3.37165 3.39210 3.43753 3.46008 3.49780 3.53200 4.15641 4.20653 4.48088 4.50912 4.67726 4.79530 4.80016 5.05040 5.09643 5.12038 5.14825 5.24030 5.41004 5.42310 5.43507 5.49903 5.52938 5.70362 5.73886 5.91236 6.00691 6.07266 6.12318 6.23586 6.30726 6.38624 6.45595 6.56270 6.59125 6.66063 7.02749 7.21850 7.24368 7.42122 7.44834 7.54574 7.65106 7.87612 7.98622 9.04773 9.71453 10.60556 11.40741 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.002161 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.447624 B =12951.325915 C =13326.418077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.367 3.633 4 C -0.183 4.183 5 C 0.165 3.835 6 C 0.567 3.433 7 O -0.528 6.528 8 N -0.582 5.582 9 C 0.083 3.917 10 C 0.040 3.960 11 N -0.530 5.530 12 C 0.035 3.965 13 C 0.132 3.868 14 N -0.610 5.610 15 C -0.220 4.220 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.126 3.874 24 C 0.038 3.962 25 C 0.115 3.885 26 N -0.509 5.509 27 C 0.333 3.667 28 N -0.565 5.565 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.099 0.901 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.939 -7.680 15.962 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.179 3.821 4 C -0.208 4.208 5 C 0.021 3.979 6 C 0.352 3.648 7 O -0.404 6.404 8 N -0.313 5.313 9 C -0.040 4.040 10 C -0.089 4.089 11 N -0.254 5.254 12 C -0.074 4.074 13 C 0.005 3.995 14 N -0.336 5.336 15 C -0.348 4.348 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.000 4.000 24 C -0.090 4.090 25 C -0.007 4.007 26 N -0.231 5.231 27 C 0.045 3.955 28 N -0.296 5.296 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.184 0.816 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.112 0.888 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -19.809 -7.441 16.168 26.630 hybrid contribution 0.911 -0.798 -1.596 2.003 sum -18.897 -8.238 14.572 25.245 Atomic orbital electron populations 1.23030 0.76096 1.03758 1.02988 1.86276 1.23801 1.23548 1.86366 1.20050 0.89204 0.85238 0.87646 1.21895 0.92737 1.00574 1.05557 1.21476 0.95024 0.88651 0.92707 1.17690 0.85251 0.83560 0.78282 1.90806 1.61337 1.37829 1.50380 1.48047 1.09019 1.07972 1.66269 1.23080 0.97140 0.86251 0.97488 1.22487 0.89982 1.00017 0.96442 1.62071 1.01557 1.17480 1.44313 1.24274 0.95685 0.96920 0.90499 1.22943 0.88553 0.92431 0.95532 1.45829 1.34223 1.48848 1.04740 1.19013 1.06654 1.20194 0.88938 0.90188 1.24794 0.99114 0.99323 0.97361 1.69829 1.34702 1.33539 1.18885 0.86117 0.80486 0.78135 0.81030 1.21637 1.21666 1.20573 1.22658 0.91594 0.98064 0.87725 1.22569 0.98958 0.91076 0.96441 1.21935 0.78728 1.01329 0.98755 1.68503 1.06189 1.31396 1.17013 1.24925 0.88379 0.93986 0.88195 1.68060 1.41962 0.99312 1.20292 0.91738 0.91680 0.87931 0.81602 0.90742 0.84195 0.89678 0.94577 0.88316 0.95190 0.91389 0.93723 0.93670 0.94563 0.93408 0.88879 0.90375 0.88795 0.77480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.41 101.05 1.05 1.24 16 2 O -0.30 -2.59 10.49 -18.23 -0.19 -2.78 16 3 C 0.37 3.55 7.54 -16.68 -0.13 3.42 16 4 C -0.18 -1.94 9.68 -38.72 -0.37 -2.32 16 5 C 0.16 1.88 6.61 -82.69 -0.55 1.33 16 6 C 0.57 7.76 7.68 -12.05 -0.09 7.67 16 7 O -0.53 -8.52 15.91 5.38 0.09 -8.44 16 8 N -0.58 -7.60 3.01 -173.34 -0.52 -8.12 16 9 C 0.08 0.94 6.03 -3.61 -0.02 0.92 16 10 C 0.04 0.53 5.61 -3.70 -0.02 0.51 16 11 N -0.53 -8.17 4.76 -228.22 -1.09 -9.25 16 12 C 0.03 0.65 4.03 -69.91 -0.28 0.37 16 13 C 0.13 3.11 6.81 -2.84 -0.02 3.10 16 14 N -0.61 -15.75 3.70 -177.83 -0.66 -16.40 16 15 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 16 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.92 -27.78 11.39 55.49 0.63 -27.14 16 19 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.58 8.42 -2.96 -0.02 2.56 16 24 C 0.04 0.59 4.47 -3.70 -0.02 0.57 16 25 C 0.11 1.52 6.62 -3.60 -0.02 1.50 16 26 N -0.51 -4.85 6.31 -11.20 -0.07 -4.92 16 27 C 0.33 2.51 12.27 -92.29 -1.13 1.38 16 28 N -0.57 -4.93 9.36 -14.64 -0.14 -5.07 16 29 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 30 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.17 1.71 7.75 -52.49 -0.41 1.30 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.14 1.46 4.16 -76.63 -0.32 1.14 16 35 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.82 8.04 -51.93 -0.42 1.41 16 38 H 0.03 0.74 5.65 -51.93 -0.29 0.44 16 39 H 0.07 1.80 7.17 -51.92 -0.37 1.43 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.72 6.22 -51.93 -0.32 0.40 16 43 H 0.05 0.85 6.45 -51.93 -0.33 0.52 16 44 H 0.09 1.49 6.06 -51.93 -0.31 1.18 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 1.28 7.04 -51.93 -0.37 0.92 16 47 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -33.96 375.91 -9.68 -43.64 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.49 Total: -0.03 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: -1.89 Total: 15.47 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.84 Total: -70.91 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.11 Total: -11.22 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.96 -9.68 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941411338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.058 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds