Wall clock time and date at job start Wed Apr 1 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35464 * 116.99872 * 2 1 4 4 N 1.32431 * 119.11552 * 359.97438 * 3 2 1 5 5 C 1.32132 * 120.97280 * 180.02562 * 4 3 2 6 6 C 1.38805 * 119.22554 * 359.97438 * 5 4 3 7 7 C 1.39467 * 118.38445 * 0.02562 * 6 5 4 8 8 C 1.48453 * 120.51491 * 180.02562 * 7 6 5 9 9 O 1.21481 * 120.00284 * 348.52161 * 8 7 6 10 10 N 1.34780 * 120.00243 * 168.52737 * 8 7 6 11 11 C 1.47082 * 120.88142 * 178.75152 * 10 8 7 12 12 C 1.53694 * 108.27517 * 128.75304 * 11 10 8 13 13 N 1.46898 * 109.26032 * 54.08070 * 12 11 10 14 14 C 1.46897 * 111.00130 * 172.60414 * 13 12 11 15 15 C 1.53949 * 113.74211 * 38.04224 * 14 13 12 16 16 N 1.47811 * 86.03787 * 222.08268 * 15 14 13 17 17 C 1.36928 * 134.45676 * 204.64164 * 16 15 14 18 18 H 1.08000 * 120.00329 * 179.86447 * 17 16 15 19 19 C 1.38813 * 120.00247 * 359.87055 * 17 16 15 20 20 N 1.31620 * 119.99614 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00445 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47306 * 59.99674 * 21 19 17 23 23 H 1.48497 * 109.47533 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47197 * 299.99823 * 21 19 17 25 25 C 1.47580 * 91.04978 * 24.55006 * 16 15 14 26 26 C 1.46903 * 111.26660 * 296.75597 * 13 12 11 27 27 C 1.47073 * 120.88026 * 359.02468 * 10 8 7 28 28 N 1.32082 * 119.11818 * 179.73370 * 3 2 1 29 29 H 1.09001 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47089 * 300.00083 * 1 2 3 31 31 H 1.08997 * 109.46876 * 60.00443 * 1 2 3 32 32 H 1.07998 * 120.38724 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.80750 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.62398 * 248.51518 * 11 10 8 35 35 H 1.08996 * 109.62937 * 9.09296 * 11 10 8 36 36 H 1.08994 * 109.64821 * 294.06974 * 12 11 10 37 37 H 1.09004 * 109.41925 * 173.94351 * 12 11 10 38 38 H 1.08997 * 112.94109 * 169.63131 * 14 13 12 39 39 H 1.09005 * 113.76466 * 336.35081 * 15 14 13 40 40 H 1.09004 * 113.76925 * 107.74116 * 15 14 13 41 41 H 0.97003 * 120.00080 * 179.97438 * 20 19 17 42 42 H 1.09001 * 113.76787 * 221.15635 * 25 16 15 43 43 H 1.08998 * 113.87682 * 89.76783 * 25 16 15 44 44 H 1.08994 * 109.49016 * 303.14282 * 26 13 12 45 45 H 1.09002 * 109.48984 * 183.06495 * 26 13 12 46 46 H 1.09002 * 109.62926 * 350.89710 * 27 10 8 47 47 H 1.09000 * 109.63397 * 111.47634 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3057 2.3064 -0.0005 5 6 1.8670 3.5025 -0.0010 6 6 3.2516 3.6014 -0.0005 7 6 4.0003 2.4247 0.0000 8 6 5.4839 2.4753 0.0012 9 8 6.0561 3.5264 -0.2077 10 7 6.1963 1.3551 0.2338 11 6 7.6668 1.3775 0.2125 12 6 8.1775 0.7308 1.5099 13 7 7.5793 -0.6030 1.6546 14 6 8.1726 -1.3261 2.7872 15 6 8.4732 -0.4325 4.0042 16 7 9.7456 -1.1775 4.1079 17 6 10.6185 -1.4473 5.1277 18 1 11.5046 -2.0352 4.9388 19 6 10.3646 -0.9654 6.4045 20 7 9.2850 -0.2487 6.6347 21 14 11.5551 -1.3341 7.7959 22 1 12.8923 -0.7808 7.4630 23 1 11.0600 -0.7105 9.0494 24 1 11.6598 -2.8038 7.9815 25 6 9.6961 -1.5154 2.6722 26 6 6.1188 -0.5201 1.7898 27 6 5.5238 0.0766 0.5099 28 7 3.3639 1.2559 0.0054 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.2558 4.3929 -0.0019 33 1 3.7372 4.5660 -0.0013 34 1 8.0291 0.8148 -0.6479 35 1 8.0165 2.4081 0.1532 36 1 7.8978 1.3494 2.3626 37 1 9.2629 0.6398 1.4666 38 1 7.6343 -2.2405 3.0365 39 1 8.5999 0.6211 3.7549 40 1 7.7985 -0.5938 4.8450 41 1 9.1073 0.0878 7.5270 42 1 9.9960 -2.5399 2.4514 43 1 10.1826 -0.7820 2.0292 44 1 5.8677 0.1159 2.6386 45 1 5.7111 -1.5183 1.9495 46 1 4.4560 0.2467 0.6473 47 1 5.6840 -0.6087 -0.3225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941483534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:30 Heat of formation + Delta-G solvation = 94.945359 kcal Electronic energy + Delta-G solvation = -30884.399851 eV Core-core repulsion = 26686.129868 eV Total energy + Delta-G solvation = -4198.269984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.90521 -40.17895 -39.01252 -38.41666 -36.66449 -34.70858 -33.55460 -31.95056 -31.81368 -30.93593 -28.30545 -27.90410 -26.57624 -25.41586 -24.81025 -24.51862 -23.37581 -22.63968 -21.55106 -20.18458 -18.80745 -18.63283 -18.07968 -17.05173 -16.92101 -16.73923 -16.25064 -15.95659 -15.55927 -15.29502 -15.04883 -14.87654 -14.68668 -14.58748 -14.25808 -14.05512 -13.85753 -13.71763 -13.02983 -12.71600 -12.34518 -12.22569 -11.94345 -11.80461 -11.73038 -11.65331 -11.47509 -11.34676 -10.98612 -10.91407 -10.76631 -10.62571 -10.60496 -10.56522 -10.14895 -9.91899 -9.53686 -9.48528 -9.08884 -8.79189 -8.69946 -7.76125 -6.83408 -5.74956 -3.07459 0.08103 0.51889 2.01080 2.47806 2.72328 3.36298 3.40330 3.44105 3.45537 3.48373 3.90167 4.10202 4.23541 4.44165 4.52424 4.74879 4.80254 4.85429 5.02319 5.14694 5.16193 5.18520 5.26686 5.43215 5.44917 5.47612 5.50473 5.54131 5.70616 5.75951 5.92689 6.00774 6.04463 6.14210 6.23309 6.34033 6.40001 6.46484 6.59327 6.66142 6.69874 7.04186 7.22734 7.25650 7.44299 7.45239 7.55841 7.66828 7.86866 7.99550 9.05621 9.72348 10.61753 11.41705 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.002401 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.762158 B =11659.204301 C =12097.566142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.285 6.285 3 C 0.496 3.504 4 N -0.557 5.557 5 C 0.194 3.806 6 C -0.210 4.210 7 C 0.179 3.821 8 C 0.567 3.433 9 O -0.528 6.528 10 N -0.579 5.579 11 C 0.114 3.886 12 C 0.039 3.961 13 N -0.530 5.530 14 C 0.035 3.965 15 C 0.133 3.867 16 N -0.609 5.609 17 C -0.221 4.221 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.126 3.874 26 C 0.042 3.958 27 C 0.069 3.931 28 N -0.491 5.491 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.085 0.915 46 H 0.154 0.846 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.414 5.036 -16.940 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.186 6.186 3 C 0.194 3.806 4 N -0.286 5.286 5 C 0.027 3.973 6 C -0.234 4.234 7 C 0.032 3.968 8 C 0.351 3.649 9 O -0.404 6.404 10 N -0.310 5.310 11 C -0.008 4.008 12 C -0.090 4.090 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.006 3.994 16 N -0.336 5.336 17 C -0.349 4.349 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.000 4.000 26 C -0.087 4.087 27 C -0.053 4.053 28 N -0.220 5.220 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.200 0.800 33 H 0.183 0.817 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.169 0.831 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.272 4.094 -17.135 26.111 hybrid contribution 0.751 1.119 1.662 2.139 sum -18.521 5.213 -15.473 24.690 Atomic orbital electron populations 1.23053 0.75284 1.03922 1.02923 1.86136 1.23659 1.22106 1.86717 1.20908 0.86024 0.85081 0.88603 1.68029 1.41565 0.99410 1.19607 1.23124 0.92196 0.94521 0.87428 1.22793 0.95531 1.01019 1.04024 1.21593 0.95071 0.88136 0.91997 1.17711 0.84518 0.84105 0.78540 1.90802 1.69856 1.29473 1.50310 1.48133 1.07481 1.09050 1.66351 1.22043 0.77784 1.02291 0.98718 1.22650 1.00590 0.89908 0.95853 1.62067 1.03653 1.16560 1.43161 1.24279 0.95734 0.98042 0.89364 1.22939 0.88557 0.93557 0.94370 1.45813 1.24884 1.60189 1.02723 1.18965 1.01677 1.27634 0.86597 0.90251 1.24789 0.98176 1.00171 0.97405 1.69820 1.26579 1.39726 1.20841 0.86195 0.80173 0.77807 0.81564 1.21190 1.21606 1.21059 1.22651 0.92210 0.98052 0.87105 1.22451 0.88738 1.01012 0.96457 1.23397 1.01634 0.82980 0.97329 1.67649 1.07249 1.27623 1.19486 0.87548 0.91694 0.91779 0.80036 0.81683 0.90325 0.88773 0.93424 0.88889 0.88324 0.95212 0.91397 0.93689 0.93693 0.94563 0.94645 0.89711 0.83063 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.36 101.05 1.05 1.30 16 2 O -0.29 -2.79 10.56 -18.08 -0.19 -2.98 16 3 C 0.50 5.29 8.48 -91.36 -0.77 4.52 16 4 N -0.56 -5.03 9.20 -14.74 -0.14 -5.17 16 5 C 0.19 1.35 11.30 -17.21 -0.19 1.16 16 6 C -0.21 -1.84 9.71 -38.91 -0.38 -2.22 16 7 C 0.18 2.08 6.64 -82.66 -0.55 1.53 16 8 C 0.57 7.81 7.70 -12.05 -0.09 7.72 16 9 O -0.53 -8.31 15.93 5.38 0.09 -8.22 16 10 N -0.58 -7.91 3.00 -173.07 -0.52 -8.43 16 11 C 0.11 1.55 6.63 -3.36 -0.02 1.52 16 12 C 0.04 0.61 4.49 -3.46 -0.02 0.59 16 13 N -0.53 -8.49 4.76 -227.94 -1.08 -9.58 16 14 C 0.03 0.66 4.03 -69.91 -0.28 0.38 16 15 C 0.13 3.16 6.81 -2.84 -0.02 3.14 16 16 N -0.61 -15.89 3.70 -177.85 -0.66 -16.55 16 17 C -0.22 -6.30 10.70 -15.06 -0.16 -6.47 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.92 -27.86 11.39 55.49 0.63 -27.22 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 C 0.13 2.63 8.42 -2.97 -0.02 2.60 16 26 C 0.04 0.61 5.61 -3.70 -0.02 0.59 16 27 C 0.07 0.88 6.20 -3.61 -0.02 0.86 16 28 N -0.49 -5.74 6.26 -11.29 -0.07 -5.81 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.17 1.24 7.77 -52.49 -0.41 0.83 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.29 7.05 -51.93 -0.37 0.93 16 36 H 0.05 0.86 6.45 -51.93 -0.33 0.52 16 37 H 0.09 1.51 6.06 -51.93 -0.31 1.20 16 38 H 0.10 1.88 8.04 -51.93 -0.42 1.46 16 39 H 0.03 0.74 5.65 -51.93 -0.29 0.44 16 40 H 0.07 1.82 7.17 -51.93 -0.37 1.45 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.73 6.22 -51.93 -0.32 0.41 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 46 H 0.15 1.92 3.83 -89.16 -0.34 1.58 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -34.35 375.62 -9.42 -43.77 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.51 Total: 0.21 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: -1.61 Total: 16.87 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.84 Total: -72.75 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.11 Total: -11.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.35 -9.42 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941483534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.714 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds