Wall clock time and date at job start Wed Apr 1 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34870 * 120.30857 * 2 1 4 4 C 1.38049 * 119.94881 * 180.02562 * 3 2 1 5 5 C 1.47576 * 119.72356 * 179.97438 * 4 3 2 6 6 O 1.21586 * 120.00424 * 321.87247 * 5 4 3 7 7 N 1.34781 * 119.99977 * 141.87966 * 5 4 3 8 8 C 1.47071 * 120.88598 * 182.39307 * 7 5 4 9 9 C 1.53698 * 108.28105 * 128.74974 * 8 7 5 10 10 N 1.46903 * 109.25538 * 54.07958 * 9 8 7 11 11 C 1.46901 * 111.00046 * 172.60852 * 10 9 8 12 12 C 1.53951 * 113.73973 * 43.04384 * 11 10 9 13 13 N 1.47814 * 86.03534 * 222.08306 * 12 11 10 14 14 C 1.36935 * 134.45559 * 204.64182 * 13 12 11 15 15 H 1.07997 * 119.99926 * 179.90919 * 14 13 12 16 16 C 1.38814 * 119.99810 * 359.91523 * 14 13 12 17 17 N 1.31626 * 120.00220 * 349.70215 * 16 14 13 18 18 Si 1.86802 * 119.99944 * 169.69960 * 16 14 13 19 19 H 1.48500 * 109.46907 * 94.93824 * 18 16 14 20 20 H 1.48497 * 109.47105 * 214.94134 * 18 16 14 21 21 H 1.48497 * 109.47040 * 334.94374 * 18 16 14 22 22 C 1.47579 * 91.04900 * 24.55329 * 13 12 11 23 23 C 1.46894 * 111.27191 * 296.76265 * 10 9 8 24 24 C 1.47083 * 120.87881 * 2.66428 * 7 5 4 25 25 N 1.34151 * 120.54713 * 0.02562 * 4 3 2 26 26 C 1.30602 * 120.62486 * 359.97438 * 25 4 3 27 27 C 1.34954 * 120.30581 * 180.31177 * 2 1 3 28 28 O 1.21865 * 120.27482 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.46835 * 89.99857 * 1 2 3 30 30 H 1.09001 * 109.47219 * 209.99848 * 1 2 3 31 31 H 1.08993 * 109.47116 * 330.00021 * 1 2 3 32 32 H 1.08006 * 120.02354 * 0.04318 * 3 2 1 33 33 H 1.09001 * 109.63317 * 248.51870 * 8 7 5 34 34 H 1.09007 * 109.62723 * 9.10292 * 8 7 5 35 35 H 1.09003 * 109.64519 * 294.08405 * 9 8 7 36 36 H 1.08998 * 109.42562 * 173.95164 * 9 8 7 37 37 H 1.08998 * 112.94501 * 174.64242 * 11 10 9 38 38 H 1.09000 * 113.76808 * 336.35441 * 12 11 10 39 39 H 1.09001 * 113.76339 * 107.74422 * 12 11 10 40 40 H 0.96998 * 119.99304 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.76460 * 221.14816 * 22 13 12 42 42 H 1.09005 * 113.87436 * 89.76857 * 22 13 12 43 43 H 1.09001 * 109.49427 * 303.14087 * 23 10 9 44 44 H 1.08997 * 109.49608 * 183.06155 * 23 10 9 45 45 H 1.09000 * 109.62831 * 350.90508 * 24 7 5 46 46 H 1.09004 * 109.62964 * 111.48082 * 24 7 5 47 47 H 1.08006 * 119.98361 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1644 0.0000 4 6 3.5261 1.1557 -0.0005 5 6 4.2659 2.4327 -0.0011 6 8 3.8537 3.3738 -0.6512 7 7 5.3985 2.5557 0.7190 8 6 6.1229 3.8344 0.7743 9 6 6.3742 4.1827 2.2500 10 7 7.0527 3.0563 2.9049 11 6 7.4685 3.4127 4.2680 12 6 6.4017 4.1933 5.0572 13 7 7.5181 5.0383 5.5311 14 6 7.7252 5.8243 6.6331 15 1 8.6583 6.3554 6.7499 16 6 6.7358 5.9384 7.6000 17 7 5.5308 5.4621 7.3682 18 14 7.1144 6.7679 9.2304 19 1 6.7188 8.1976 9.1620 20 1 6.3559 6.0957 10.3157 21 1 8.5696 6.6699 9.5094 22 6 8.3203 4.6929 4.3415 23 6 6.2076 1.8549 2.9094 24 6 5.9462 1.4129 1.4656 25 7 4.2007 -0.0039 -0.0016 26 6 3.5638 -1.1441 -0.0016 27 6 2.1460 -1.1651 -0.0063 28 8 1.5474 -2.2266 -0.0116 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6111 2.1028 0.0007 33 1 7.0740 3.7395 0.2503 34 1 5.5219 4.6161 0.3095 35 1 5.4239 4.3743 2.7483 36 1 7.0028 5.0712 2.3108 37 1 7.8923 2.5716 4.8166 38 1 5.6876 4.7220 4.4260 39 1 5.9248 3.6108 5.8455 40 1 4.8397 5.5416 8.0441 41 1 9.3723 4.5088 4.5594 42 1 8.1724 5.3680 3.4985 43 1 5.2596 2.0788 3.3985 44 1 6.7154 1.0550 3.4483 45 1 5.2283 0.5927 1.4581 46 1 6.8806 1.0896 1.0068 47 1 4.1173 -2.0715 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941491967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:31 Heat of formation + Delta-G solvation = 77.494404 kcal Electronic energy + Delta-G solvation = -30863.741877 eV Core-core repulsion = 26664.715163 eV Total energy + Delta-G solvation = -4199.026714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.34788 -40.27748 -38.97172 -37.79765 -36.70602 -36.36782 -33.72389 -31.87316 -31.45942 -30.68011 -28.98716 -28.06439 -26.35012 -25.29927 -24.89539 -24.55344 -23.54614 -22.67456 -21.56300 -20.01944 -19.15942 -18.53520 -17.84024 -17.40707 -16.97324 -16.82079 -16.33289 -15.86050 -15.49983 -15.25226 -15.06853 -14.92591 -14.74052 -14.55301 -14.13158 -14.03678 -13.85959 -13.65323 -13.31250 -13.12592 -12.80776 -12.44839 -12.28166 -11.98426 -11.83149 -11.80553 -11.62379 -11.44123 -11.13147 -11.00301 -10.79675 -10.68316 -10.59965 -10.34289 -10.17096 -9.96173 -9.67061 -9.52313 -8.85598 -8.72655 -8.58145 -7.83168 -6.89462 -5.81113 -3.10451 0.02902 0.87153 1.73408 2.47085 2.81649 3.14486 3.36803 3.42548 3.44705 3.65769 3.75829 4.02364 4.16515 4.35195 4.47947 4.54994 4.59925 4.71094 4.97261 4.99413 5.07056 5.18948 5.25983 5.35433 5.36489 5.41872 5.45881 5.47973 5.65816 5.69407 5.83657 5.90208 5.97638 6.00751 6.09626 6.19705 6.34567 6.41826 6.55850 6.62397 6.98286 7.02046 7.14205 7.20371 7.28684 7.37923 7.50784 7.59138 7.94441 7.96027 9.01027 9.68342 10.57187 11.36651 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.002395 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.583068 B =11686.312235 C =12327.223800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.481 5.481 3 C 0.167 3.833 4 C -0.069 4.069 5 C 0.590 3.410 6 O -0.544 6.544 7 N -0.590 5.590 8 C 0.118 3.882 9 C 0.036 3.964 10 N -0.528 5.528 11 C 0.035 3.965 12 C 0.136 3.864 13 N -0.609 5.609 14 C -0.222 4.222 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.124 3.876 23 C 0.039 3.961 24 C 0.113 3.887 25 N -0.366 5.366 26 C 0.036 3.964 27 C 0.474 3.526 28 O -0.522 6.522 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.253 0.747 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -12.428 -17.129 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.191 5.191 3 C 0.032 3.968 4 C -0.193 4.193 5 C 0.377 3.623 6 O -0.422 6.422 7 N -0.321 5.321 8 C -0.004 4.004 9 C -0.093 4.093 10 N -0.253 5.253 11 C -0.074 4.074 12 C 0.009 3.991 13 N -0.335 5.335 14 C -0.350 4.350 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.002 4.002 23 C -0.090 4.090 24 C -0.010 4.010 25 N -0.081 5.081 26 C -0.153 4.153 27 C 0.271 3.729 28 O -0.398 6.398 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.201 0.799 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.567 -12.374 -17.425 22.358 hybrid contribution -1.552 0.765 1.474 2.273 sum -8.119 -11.609 -15.951 21.334 Atomic orbital electron populations 1.22412 0.75510 1.06012 1.04874 1.45589 1.10365 1.06885 1.56292 1.23145 0.93314 0.91137 0.89197 1.20354 0.89594 0.93374 1.15973 1.17227 0.80320 0.85351 0.79441 1.90812 1.68183 1.39884 1.43286 1.47979 1.23681 1.13038 1.47420 1.21963 0.96588 0.84837 0.97039 1.22704 0.98786 0.95011 0.92779 1.62039 1.39843 1.03990 1.19411 1.24257 0.99086 0.97655 0.86366 1.22860 0.91190 0.90595 0.94436 1.45927 1.14238 1.54813 1.18562 1.19017 1.00038 1.21393 0.94538 0.90135 1.24776 0.95381 1.01315 0.98956 1.69868 1.01613 1.51324 1.33933 0.86136 0.77569 0.78650 0.83635 1.21692 1.21613 1.20494 1.22690 0.95523 0.92067 0.89930 1.22458 0.96425 0.94152 0.95953 1.22216 1.00119 0.87932 0.90726 1.67879 1.39791 0.97678 1.02799 1.24822 0.89338 0.97689 1.03458 1.18821 0.90803 0.83316 0.79931 1.90962 1.70613 1.28016 1.50201 0.89564 0.88011 0.88623 0.79905 0.90484 0.88803 0.93432 0.88759 0.88181 0.95105 0.92121 0.93749 0.93551 0.94481 0.94449 0.89648 0.88069 0.90252 0.78804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.23 10.42 59.85 0.62 0.85 16 2 N -0.48 -3.59 2.97 -126.19 -0.38 -3.96 16 3 C 0.17 1.30 9.91 -16.29 -0.16 1.14 16 4 C -0.07 -0.71 5.98 -83.11 -0.50 -1.21 16 5 C 0.59 7.52 7.46 -12.45 -0.09 7.43 16 6 O -0.54 -8.20 16.30 5.29 0.09 -8.12 16 7 N -0.59 -7.35 3.00 -173.39 -0.52 -7.87 16 8 C 0.12 1.50 6.62 -3.37 -0.02 1.47 16 9 C 0.04 0.53 4.65 -3.46 -0.02 0.51 16 10 N -0.53 -7.85 4.77 -227.93 -1.09 -8.94 16 11 C 0.03 0.63 4.05 -69.91 -0.28 0.35 16 12 C 0.14 3.12 6.72 -2.83 -0.02 3.10 16 13 N -0.61 -15.43 3.70 -177.86 -0.66 -16.08 16 14 C -0.22 -6.21 10.68 -15.06 -0.16 -6.37 16 15 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.28 11.60 55.49 0.64 -26.63 16 18 Si 0.91 22.07 29.57 -169.99 -5.03 17.04 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.12 2.49 8.40 -2.97 -0.02 2.46 16 23 C 0.04 0.50 5.55 -3.70 -0.02 0.48 16 24 C 0.11 1.25 6.10 -3.60 -0.02 1.23 16 25 N -0.37 -3.51 7.33 -9.34 -0.07 -3.58 16 26 C 0.04 0.30 11.23 -16.72 -0.19 0.11 16 27 C 0.47 4.50 7.45 -14.82 -0.11 4.39 16 28 O -0.52 -6.35 16.75 5.04 0.08 -6.26 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.52 7.47 -51.93 -0.39 0.13 16 31 H 0.10 0.19 8.04 -51.93 -0.42 -0.23 16 32 H 0.18 1.03 8.00 -52.48 -0.42 0.61 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.22 7.07 -51.92 -0.37 0.85 16 35 H 0.05 0.80 6.38 -51.93 -0.33 0.47 16 36 H 0.09 1.44 5.81 -51.93 -0.30 1.14 16 37 H 0.10 1.79 8.11 -51.93 -0.42 1.37 16 38 H 0.03 0.74 5.76 -51.93 -0.30 0.44 16 39 H 0.06 1.56 7.43 -51.93 -0.39 1.17 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.72 5.93 -51.93 -0.31 0.41 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 45 H 0.10 1.05 4.70 -51.93 -0.24 0.80 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -35.34 375.76 -8.74 -44.07 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.39 Total: -0.97 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -1.09 Total: 15.64 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -2.07 Total: -67.07 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.17 Total: -14.38 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.34 -8.74 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941491967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.567 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds