Wall clock time and date at job start Wed Apr 1 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35664 * 117.00261 * 2 1 4 4 C 1.39488 * 120.01320 * 180.02562 * 3 2 1 5 5 N 1.31952 * 120.11624 * 180.02562 * 4 3 2 6 6 C 1.32200 * 120.14012 * 359.97304 * 5 4 3 7 7 C 1.39232 * 120.02004 * 0.02562 * 6 5 4 8 8 C 1.48135 * 120.05212 * 179.97438 * 7 6 5 9 9 O 1.21519 * 120.00118 * 351.36391 * 8 7 6 10 10 N 1.34782 * 119.99874 * 171.36844 * 8 7 6 11 11 C 1.47083 * 120.88149 * 352.67497 * 10 8 7 12 12 C 1.53233 * 108.52055 * 231.20841 * 11 10 8 13 13 N 1.46900 * 109.34352 * 306.17138 * 12 11 10 14 14 C 1.46898 * 111.00036 * 187.25529 * 13 12 11 15 15 C 1.53943 * 113.74054 * 273.73814 * 14 13 12 16 16 N 1.47814 * 86.03622 * 222.08297 * 15 14 13 17 17 C 1.36936 * 134.45648 * 204.64060 * 16 15 14 18 18 H 1.07996 * 119.99940 * 179.87342 * 17 16 15 19 19 C 1.38811 * 120.00208 * 359.87607 * 17 16 15 20 20 N 1.31617 * 119.99811 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47091 * 89.99814 * 21 19 17 23 23 H 1.48500 * 109.46984 * 209.99851 * 21 19 17 24 24 H 1.48496 * 109.46739 * 330.00067 * 21 19 17 25 25 C 1.47580 * 91.04908 * 24.55453 * 16 15 14 26 26 C 1.46894 * 111.26681 * 63.10448 * 13 12 11 27 27 C 1.47078 * 120.88084 * 172.70272 * 10 8 7 28 28 N 1.32169 * 120.00818 * 0.23920 * 3 2 1 29 29 H 1.08995 * 109.47725 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47230 * 300.00118 * 1 2 3 31 31 H 1.08999 * 109.47445 * 59.99385 * 1 2 3 32 32 H 1.08005 * 119.94553 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.98486 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.62197 * 111.49618 * 11 10 8 35 35 H 1.08999 * 109.62561 * 350.92341 * 11 10 8 36 36 H 1.09004 * 109.49299 * 186.21408 * 12 11 10 37 37 H 1.09003 * 109.49703 * 66.13302 * 12 11 10 38 38 H 1.08995 * 112.94487 * 45.33146 * 14 13 12 39 39 H 1.08997 * 113.77248 * 336.35716 * 15 14 13 40 40 H 1.09010 * 113.76612 * 107.74996 * 15 14 13 41 41 H 0.97003 * 120.00144 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.76570 * 221.15075 * 25 16 15 43 43 H 1.08997 * 113.77132 * 89.75086 * 25 16 15 44 44 H 1.09004 * 109.49631 * 56.85823 * 26 13 12 45 45 H 1.09003 * 109.49392 * 176.93672 * 26 13 12 46 46 H 1.08997 * 109.62787 * 248.50073 * 27 10 8 47 47 H 1.09000 * 109.62806 * 9.08283 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4379 1.2820 -0.0005 5 7 4.0391 2.4566 0.0000 6 6 3.3239 3.5684 0.0005 7 6 1.9331 3.5020 0.0010 8 6 1.1310 4.7474 0.0021 9 8 1.6767 5.8215 0.1606 10 7 -0.2042 4.6891 -0.1726 11 6 -0.8650 3.4230 -0.5243 12 6 -1.7562 3.6625 -1.7476 13 7 -2.6660 4.7832 -1.4748 14 6 -3.6520 4.9352 -2.5531 15 6 -3.1583 5.8004 -3.7268 16 7 -4.5081 6.4029 -3.7164 17 6 -5.2830 7.0359 -4.6513 18 1 -6.2666 7.3935 -4.3847 19 6 -4.8044 7.2179 -5.9415 20 7 -3.6056 6.7824 -6.2662 21 14 -5.8618 8.0808 -7.2170 22 1 -5.5926 9.5406 -7.1775 23 1 -5.5377 7.5540 -8.5670 24 1 -7.2957 7.8337 -6.9202 25 6 -4.6858 6.0465 -2.2954 26 6 -1.9234 6.0323 -1.2604 27 6 -1.0390 5.8900 -0.0171 28 7 1.3253 2.3173 0.0048 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 4.0254 0.3758 -0.0014 33 1 3.8186 4.5285 0.0013 34 1 -1.4753 3.0838 0.3126 35 1 -0.1126 2.6707 -0.7610 36 1 -2.3377 2.7643 -1.9555 37 1 -1.1338 3.9010 -2.6101 38 1 -4.0937 3.9878 -2.8617 39 1 -2.3643 6.4964 -3.4561 40 1 -2.9371 5.2310 -4.6297 41 1 -3.2712 6.9092 -7.1679 42 1 -5.6819 5.6731 -2.0574 43 1 -4.3415 6.8149 -1.6033 44 1 -1.2986 6.2378 -2.1297 45 1 -2.6261 6.8528 -1.1150 46 1 -1.6661 5.7878 0.8685 47 1 -0.4016 6.7687 0.0814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941593549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:14 Heat of formation + Delta-G solvation = 86.087191 kcal Electronic energy + Delta-G solvation = -31175.639770 eV Core-core repulsion = 26976.985667 eV Total energy + Delta-G solvation = -4198.654103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.00582 -40.17212 -39.09735 -38.57608 -36.72160 -34.93297 -33.62645 -31.87746 -31.76622 -30.93035 -28.46027 -27.91914 -26.51246 -25.46919 -24.86625 -24.39000 -23.54021 -22.71915 -21.64516 -20.22383 -18.93332 -18.55140 -17.96704 -17.36928 -16.95391 -16.85862 -16.66873 -16.16262 -15.59399 -15.37710 -15.03742 -14.92094 -14.76214 -14.46283 -14.22406 -14.12013 -13.80791 -13.43517 -13.16111 -13.07116 -12.34239 -12.28347 -12.12632 -12.04961 -11.81225 -11.75021 -11.64032 -11.42987 -10.98828 -10.96004 -10.85587 -10.71248 -10.67058 -10.57569 -10.18886 -9.94177 -9.53490 -9.34522 -9.23432 -8.83816 -8.74342 -7.84820 -6.87628 -5.78722 -3.11415 -0.05662 0.56042 2.35780 2.41724 2.62739 3.28361 3.36982 3.37992 3.42126 3.44175 3.75528 3.94621 4.13818 4.33161 4.47850 4.64003 4.83106 4.86426 4.90340 4.98714 5.08134 5.18266 5.20799 5.32471 5.34485 5.39530 5.48755 5.54760 5.62186 5.67194 5.84959 5.89105 5.94223 6.05489 6.17728 6.32106 6.33194 6.49728 6.54085 6.57251 6.61661 6.96854 7.10018 7.18194 7.23737 7.35896 7.50323 7.59751 7.83264 7.95593 9.01912 9.68692 10.57302 11.37959 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002460 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.370690 B =11380.269554 C =11692.429796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.295 6.295 3 C 0.271 3.729 4 C 0.068 3.932 5 N -0.403 5.403 6 C 0.067 3.933 7 C 0.079 3.921 8 C 0.571 3.429 9 O -0.528 6.528 10 N -0.585 5.585 11 C 0.084 3.916 12 C 0.039 3.961 13 N -0.529 5.529 14 C 0.034 3.966 15 C 0.132 3.868 16 N -0.609 5.609 17 C -0.221 4.221 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.126 3.874 26 C 0.038 3.962 27 C 0.115 3.885 28 N -0.465 5.465 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.099 0.901 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.494 -14.617 15.921 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.200 6.200 3 C 0.086 3.914 4 C -0.098 4.098 5 N -0.117 5.117 6 C -0.090 4.090 7 C -0.060 4.060 8 C 0.356 3.644 9 O -0.404 6.404 10 N -0.316 5.316 11 C -0.038 4.038 12 C -0.090 4.090 13 N -0.253 5.253 14 C -0.074 4.074 15 C 0.005 3.995 16 N -0.336 5.336 17 C -0.349 4.349 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.000 4.000 26 C -0.091 4.091 27 C -0.007 4.007 28 N -0.198 5.198 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.200 0.800 33 H 0.204 0.796 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.515 -14.257 16.126 24.411 hybrid contribution -0.586 0.804 -1.595 1.880 sum 10.929 -13.453 14.530 22.618 Atomic orbital electron populations 1.23148 0.76258 1.04119 1.03020 1.86303 1.23632 1.22884 1.87178 1.21208 0.91267 0.85700 0.93180 1.23270 0.89687 0.97900 0.98915 1.68659 1.37973 0.97655 1.07386 1.23648 0.90468 0.98709 0.96205 1.22010 0.93589 0.91410 0.98966 1.17640 0.82007 0.86751 0.77986 1.90815 1.70667 1.28360 1.50565 1.48038 1.05423 1.11700 1.66478 1.23035 0.97374 0.86039 0.97401 1.22477 0.94666 0.95494 0.96330 1.62066 1.15347 1.03917 1.44013 1.24288 0.93611 0.99067 0.90472 1.22940 0.88382 0.92596 0.95537 1.45823 1.14406 1.68365 1.04996 1.19010 0.96739 1.30060 0.89114 0.90184 1.24790 0.96889 1.01438 0.97379 1.69825 1.17037 1.50930 1.19104 0.86119 0.79427 0.79208 0.81015 1.21604 1.21647 1.20574 1.22652 0.96357 0.93173 0.87813 1.22578 0.96483 0.93555 0.96460 1.21926 0.92639 0.87512 0.98647 1.68220 1.37764 0.98341 1.15503 0.87730 0.91661 0.91593 0.79984 0.79598 0.90941 0.84918 0.89829 0.94481 0.88349 0.95165 0.91385 0.93705 0.93668 0.94554 0.93350 0.88815 0.90460 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.25 101.05 1.04 1.20 16 2 O -0.30 -2.22 10.49 -18.69 -0.20 -2.41 16 3 C 0.27 2.34 7.50 -16.94 -0.13 2.21 16 4 C 0.07 0.53 11.18 -17.03 -0.19 0.34 16 5 N -0.40 -3.87 10.48 -12.58 -0.13 -4.01 16 6 C 0.07 0.69 10.76 -17.02 -0.18 0.51 16 7 C 0.08 0.88 6.58 -82.86 -0.55 0.34 16 8 C 0.57 7.59 7.67 -12.19 -0.09 7.50 16 9 O -0.53 -8.21 15.83 5.35 0.08 -8.13 16 10 N -0.59 -7.46 3.01 -173.47 -0.52 -7.98 16 11 C 0.08 0.93 6.01 -3.60 -0.02 0.91 16 12 C 0.04 0.51 5.61 -3.70 -0.02 0.49 16 13 N -0.53 -7.94 4.76 -228.24 -1.09 -9.03 16 14 C 0.03 0.63 4.03 -69.92 -0.28 0.35 16 15 C 0.13 3.08 6.81 -2.84 -0.02 3.06 16 16 N -0.61 -15.56 3.70 -177.87 -0.66 -16.22 16 17 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.13 2.55 8.42 -2.97 -0.02 2.53 16 26 C 0.04 0.57 4.47 -3.70 -0.02 0.55 16 27 C 0.11 1.49 6.62 -3.60 -0.02 1.46 16 28 N -0.46 -4.59 5.27 -9.69 -0.05 -4.64 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 7.37 -51.93 -0.38 0.00 16 32 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.19 1.74 7.66 -52.49 -0.40 1.34 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.13 1.38 3.22 -78.50 -0.25 1.12 16 36 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 1.78 8.04 -51.93 -0.42 1.36 16 39 H 0.03 0.73 5.65 -51.93 -0.29 0.44 16 40 H 0.07 1.78 7.17 -51.92 -0.37 1.41 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 43 H 0.04 0.71 6.22 -51.93 -0.32 0.39 16 44 H 0.05 0.85 6.45 -51.93 -0.33 0.51 16 45 H 0.09 1.48 6.06 -51.93 -0.31 1.16 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.27 7.04 -51.93 -0.37 0.90 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -33.19 373.86 -8.47 -41.66 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.38 Total: 0.08 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -0.77 Total: 14.72 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.82 Total: -68.77 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.11 Total: -10.54 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.19 -8.47 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941593549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.750 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds