Wall clock time and date at job start Wed Apr 1 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35664 * 117.00261 * 2 1 4 4 C 1.39488 * 120.01320 * 180.02562 * 3 2 1 5 5 N 1.31952 * 120.11624 * 180.02562 * 4 3 2 6 6 C 1.32200 * 120.14012 * 359.97304 * 5 4 3 7 7 C 1.39232 * 120.02004 * 0.02562 * 6 5 4 8 8 C 1.48135 * 120.05212 * 179.97438 * 7 6 5 9 9 O 1.21519 * 120.00118 * 351.36391 * 8 7 6 10 10 N 1.34782 * 119.99874 * 171.36844 * 8 7 6 11 11 C 1.47083 * 120.88149 * 352.67497 * 10 8 7 12 12 C 1.53233 * 108.52055 * 231.20841 * 11 10 8 13 13 N 1.46900 * 109.34352 * 306.17138 * 12 11 10 14 14 C 1.46898 * 111.00036 * 187.25529 * 13 12 11 15 15 C 1.53943 * 113.74054 * 273.73814 * 14 13 12 16 16 N 1.47814 * 86.03622 * 222.08297 * 15 14 13 17 17 C 1.36936 * 134.45648 * 204.64060 * 16 15 14 18 18 H 1.07996 * 119.99940 * 179.87342 * 17 16 15 19 19 C 1.38811 * 120.00208 * 359.87607 * 17 16 15 20 20 N 1.31617 * 119.99811 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47091 * 89.99814 * 21 19 17 23 23 H 1.48500 * 109.46984 * 209.99851 * 21 19 17 24 24 H 1.48496 * 109.46739 * 330.00067 * 21 19 17 25 25 C 1.47580 * 91.04908 * 24.55453 * 16 15 14 26 26 C 1.46894 * 111.26681 * 63.10448 * 13 12 11 27 27 C 1.47078 * 120.88084 * 172.70272 * 10 8 7 28 28 N 1.32169 * 120.00818 * 0.23920 * 3 2 1 29 29 H 1.08995 * 109.47725 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47230 * 300.00118 * 1 2 3 31 31 H 1.08999 * 109.47445 * 59.99385 * 1 2 3 32 32 H 1.08005 * 119.94553 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.98486 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.62197 * 111.49618 * 11 10 8 35 35 H 1.08999 * 109.62561 * 350.92341 * 11 10 8 36 36 H 1.09004 * 109.49299 * 186.21408 * 12 11 10 37 37 H 1.09003 * 109.49703 * 66.13302 * 12 11 10 38 38 H 1.08995 * 112.94487 * 45.33146 * 14 13 12 39 39 H 1.08997 * 113.77248 * 336.35716 * 15 14 13 40 40 H 1.09010 * 113.76612 * 107.74996 * 15 14 13 41 41 H 0.97003 * 120.00144 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.76570 * 221.15075 * 25 16 15 43 43 H 1.08997 * 113.77132 * 89.75086 * 25 16 15 44 44 H 1.09004 * 109.49631 * 56.85823 * 26 13 12 45 45 H 1.09003 * 109.49392 * 176.93672 * 26 13 12 46 46 H 1.08997 * 109.62787 * 248.50073 * 27 10 8 47 47 H 1.09000 * 109.62806 * 9.08283 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4379 1.2820 -0.0005 5 7 4.0391 2.4566 0.0000 6 6 3.3239 3.5684 0.0005 7 6 1.9331 3.5020 0.0010 8 6 1.1310 4.7474 0.0021 9 8 1.6767 5.8215 0.1606 10 7 -0.2042 4.6891 -0.1726 11 6 -0.8650 3.4230 -0.5243 12 6 -1.7562 3.6625 -1.7476 13 7 -2.6660 4.7832 -1.4748 14 6 -3.6520 4.9352 -2.5531 15 6 -3.1583 5.8004 -3.7268 16 7 -4.5081 6.4029 -3.7164 17 6 -5.2830 7.0359 -4.6513 18 1 -6.2666 7.3935 -4.3847 19 6 -4.8044 7.2179 -5.9415 20 7 -3.6056 6.7824 -6.2662 21 14 -5.8618 8.0808 -7.2170 22 1 -5.5926 9.5406 -7.1775 23 1 -5.5377 7.5540 -8.5670 24 1 -7.2957 7.8337 -6.9202 25 6 -4.6858 6.0465 -2.2954 26 6 -1.9234 6.0323 -1.2604 27 6 -1.0390 5.8900 -0.0171 28 7 1.3253 2.3173 0.0048 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 4.0254 0.3758 -0.0014 33 1 3.8186 4.5285 0.0013 34 1 -1.4753 3.0838 0.3126 35 1 -0.1126 2.6707 -0.7610 36 1 -2.3377 2.7643 -1.9555 37 1 -1.1338 3.9010 -2.6101 38 1 -4.0937 3.9878 -2.8617 39 1 -2.3643 6.4964 -3.4561 40 1 -2.9371 5.2310 -4.6297 41 1 -3.2712 6.9092 -7.1679 42 1 -5.6819 5.6731 -2.0574 43 1 -4.3415 6.8149 -1.6033 44 1 -1.2986 6.2378 -2.1297 45 1 -2.6261 6.8528 -1.1150 46 1 -1.6661 5.7878 0.8685 47 1 -0.4016 6.7687 0.0814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941593549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:11 Heat of formation + Delta-G solvation = 60.589943 kcal Electronic energy + Delta-G solvation = -31176.745413 eV Core-core repulsion = 26976.985667 eV Total energy + Delta-G solvation = -4199.759746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.76008 -41.28780 -40.31445 -39.36819 -38.04033 -35.84209 -34.95452 -33.76139 -32.59672 -31.92633 -29.88782 -28.74971 -27.85096 -26.65065 -26.42859 -25.19036 -24.53051 -24.38093 -22.82552 -21.36841 -20.10780 -19.52732 -18.90544 -18.76500 -18.06327 -17.76973 -17.48550 -17.24287 -16.92588 -16.81008 -16.42216 -16.17146 -15.68295 -15.57503 -15.49423 -15.10821 -15.08328 -14.46300 -14.24990 -14.06270 -13.84165 -13.60008 -13.41668 -13.26039 -12.92069 -12.84934 -12.80389 -12.69567 -12.55011 -12.27087 -12.22193 -12.04590 -11.92814 -11.89249 -11.70185 -11.63193 -11.38874 -10.87737 -10.16890 -10.02052 -9.78485 -9.28182 -8.88837 -7.93383 -5.27646 -0.81776 -0.15386 1.42535 1.44698 1.47234 1.53456 1.66017 1.79752 2.41969 2.50603 2.56833 2.88717 3.03296 3.26468 3.27178 3.46923 3.51273 3.81853 3.90181 3.94069 4.01238 4.10737 4.24367 4.31389 4.38984 4.44056 4.46457 4.46769 4.52480 4.63616 4.76841 4.79572 4.83601 4.91129 4.92406 4.96287 4.96804 5.11774 5.19630 5.30538 5.40054 5.45861 5.76227 5.87678 5.92601 5.99771 6.10644 6.21554 6.44955 6.82374 6.87522 7.57465 8.52698 9.22717 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002460 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.370690 B =11380.269554 C =11692.429796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.294 6.294 3 C 0.271 3.729 4 C 0.083 3.917 5 N -0.415 5.415 6 C 0.065 3.935 7 C 0.062 3.938 8 C 0.569 3.431 9 O -0.559 6.559 10 N -0.590 5.590 11 C 0.094 3.906 12 C 0.038 3.962 13 N -0.514 5.514 14 C 0.067 3.933 15 C 0.132 3.868 16 N -0.640 5.640 17 C -0.232 4.232 18 H 0.087 0.913 19 C -0.070 4.070 20 N -0.956 5.956 21 Si 0.980 3.020 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.264 1.264 25 C 0.129 3.871 26 C 0.044 3.956 27 C 0.123 3.877 28 N -0.468 5.468 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.217 0.783 33 H 0.187 0.813 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.014 0.986 38 H 0.109 0.891 39 H 0.016 0.984 40 H 0.030 0.970 41 H 0.246 0.754 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.017 0.983 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.919 -16.770 17.499 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.198 6.198 3 C 0.085 3.915 4 C -0.083 4.083 5 N -0.129 5.129 6 C -0.091 4.091 7 C -0.076 4.076 8 C 0.356 3.644 9 O -0.438 6.438 10 N -0.321 5.321 11 C -0.028 4.028 12 C -0.091 4.091 13 N -0.237 5.237 14 C -0.043 4.043 15 C 0.005 3.995 16 N -0.367 5.367 17 C -0.360 4.360 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.605 5.605 21 Si 0.808 3.192 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.189 1.189 25 C 0.004 3.996 26 C -0.085 4.085 27 C 0.001 3.999 28 N -0.202 5.202 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.204 0.796 34 H 0.109 0.891 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.032 0.968 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.916 -16.416 17.751 26.528 hybrid contribution -0.365 1.350 -2.028 2.464 sum 10.550 -15.066 15.723 24.197 Atomic orbital electron populations 1.23381 0.75103 1.05812 1.02949 1.86326 1.24770 1.21910 1.86807 1.21389 0.91708 0.85673 0.92703 1.23869 0.89834 0.98386 0.96195 1.68729 1.38052 0.97992 1.08110 1.23667 0.90236 0.99222 0.96009 1.21637 0.93528 0.91041 1.01345 1.17947 0.82092 0.87195 0.77195 1.90788 1.71239 1.29734 1.52021 1.48159 1.05504 1.12080 1.66337 1.23110 0.97297 0.85520 0.96894 1.22630 0.94539 0.95294 0.96606 1.62124 1.15484 1.04444 1.41685 1.23852 0.93298 0.98240 0.88886 1.22849 0.87576 0.92987 0.96102 1.46224 1.15038 1.68298 1.07117 1.19445 0.97332 1.29290 0.89965 0.89574 1.25663 0.98256 1.02824 0.99545 1.70035 1.18847 1.52643 1.19015 0.85055 0.78517 0.77701 0.77948 1.21532 1.22125 1.18880 1.22800 0.97748 0.93812 0.85271 1.22482 0.96133 0.93467 0.96408 1.21813 0.92370 0.87793 0.97962 1.68027 1.38090 0.98258 1.15783 0.85287 0.91525 0.91804 0.76619 0.79605 0.89137 0.83832 0.87512 0.96807 0.87329 0.96684 0.95155 0.94466 0.92072 0.93354 0.96457 0.89437 0.88390 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.25 113.37 1.16 1.34 16 2 O -0.29 -3.54 10.49 -89.80 -0.94 -4.48 16 3 C 0.27 4.03 7.50 84.94 0.64 4.67 16 4 C 0.08 1.10 11.18 84.98 0.95 2.05 16 5 N -0.42 -7.35 10.48 -193.72 -2.03 -9.38 16 6 C 0.07 1.31 10.76 84.88 0.91 2.22 16 7 C 0.06 1.34 6.58 41.81 0.28 1.62 16 8 C 0.57 15.15 7.67 86.87 0.67 15.82 16 9 O -0.56 -17.88 15.83 -3.78 -0.06 -17.94 16 10 N -0.59 -14.65 3.01 -821.02 -2.47 -17.12 16 11 C 0.09 1.90 6.01 86.35 0.52 2.42 16 12 C 0.04 0.93 5.61 86.38 0.48 1.42 16 13 N -0.51 -14.86 4.76 -876.02 -4.17 -19.03 16 14 C 0.07 2.40 4.03 46.67 0.19 2.59 16 15 C 0.13 6.36 6.81 86.44 0.59 6.95 16 16 N -0.64 -33.07 3.70 -716.66 -2.65 -35.72 16 17 C -0.23 -13.15 10.70 84.03 0.90 -12.25 16 18 H 0.09 4.64 7.83 -2.91 -0.02 4.61 16 19 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 20 N -0.96 -59.10 11.39 21.65 0.25 -58.85 16 21 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.13 5.07 8.42 86.49 0.73 5.80 16 26 C 0.04 1.33 4.47 86.38 0.39 1.72 16 27 C 0.12 3.12 6.62 86.35 0.57 3.69 16 28 N -0.47 -8.45 5.27 -297.48 -1.57 -10.01 16 29 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.55 8.11 -2.38 -0.02 0.53 16 31 H 0.06 0.56 7.37 -2.39 -0.02 0.54 16 32 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 33 H 0.19 3.58 7.66 -2.91 -0.02 3.55 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.15 2.71 3.22 -54.85 -0.18 2.53 16 36 H 0.11 2.18 8.04 -2.38 -0.02 2.16 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 3.76 8.04 -2.39 -0.02 3.74 16 39 H 0.02 0.78 5.65 -2.39 -0.01 0.77 16 40 H 0.03 1.67 7.17 -2.38 -0.02 1.65 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.05 1.83 6.22 -2.39 -0.01 1.81 16 44 H 0.02 0.64 6.45 -2.39 -0.02 0.62 16 45 H 0.09 2.76 6.06 -2.39 -0.01 2.75 16 46 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.09 2.39 7.04 -2.39 -0.02 2.38 16 Total: -1.00 -73.84 373.86 -1.34 -75.18 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.84 Total: 12.54 kcal Atomic # 6 Polarization: 27.00 SS G_CDS: 9.44 Total: 36.44 kcal Atomic # 7 Polarization: -137.47 SS G_CDS: -12.64 Total: -150.12 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.00 Total: -22.41 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.84 -1.34 -75.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941593549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.768 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds