Wall clock time and date at job start Wed Apr 1 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35290 * 117.00415 * 2 1 4 4 N 1.32467 * 119.02612 * 180.02562 * 3 2 1 5 5 C 1.32013 * 120.91813 * 180.02562 * 4 3 2 6 6 C 1.40058 * 118.98753 * 359.97438 * 5 4 3 7 7 C 1.47632 * 120.88351 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99683 * 228.39446 * 7 6 5 9 9 N 1.34770 * 120.00262 * 48.38762 * 7 6 5 10 10 C 1.47079 * 120.88127 * 176.20689 * 9 7 6 11 11 C 1.53241 * 108.52028 * 231.20541 * 10 9 7 12 12 N 1.46895 * 109.34326 * 306.17256 * 11 10 9 13 13 C 1.46904 * 111.00023 * 187.25314 * 12 11 10 14 14 C 1.53496 * 114.20681 * 179.97438 * 13 12 11 15 15 N 1.47068 * 87.98581 * 220.15050 * 14 13 12 16 16 C 1.36933 * 136.05548 * 206.87049 * 15 14 13 17 17 H 1.08004 * 120.00048 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99917 * 179.97438 * 16 15 14 19 19 N 1.31611 * 120.00148 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46814 * 60.00329 * 20 18 16 22 22 H 1.48503 * 109.47036 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47407 * 300.00308 * 20 18 16 24 24 C 1.47063 * 87.88527 * 27.11880 * 15 14 13 25 25 C 1.46894 * 111.26983 * 63.10155 * 12 11 10 26 26 C 1.47077 * 120.88190 * 356.23024 * 9 7 6 27 27 C 1.40057 * 118.23446 * 0.25331 * 6 5 4 28 28 N 1.32017 * 118.98785 * 359.49146 * 27 6 5 29 29 H 1.09003 * 109.46789 * 299.99682 * 1 2 3 30 30 H 1.08998 * 109.47303 * 59.99738 * 1 2 3 31 31 H 1.08999 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.07992 * 120.50671 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.63027 * 111.49784 * 10 9 7 34 34 H 1.08996 * 109.79145 * 351.01376 * 10 9 7 35 35 H 1.09005 * 109.48970 * 186.20864 * 11 10 9 36 36 H 1.09008 * 109.49049 * 66.13444 * 11 10 9 37 37 H 1.08995 * 113.28042 * 313.06360 * 13 12 11 38 38 H 1.08995 * 113.46862 * 105.36257 * 14 13 12 39 39 H 1.09001 * 113.51774 * 334.93510 * 14 13 12 40 40 H 0.96999 * 120.00355 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.47042 * 87.66444 * 24 15 14 42 42 H 1.09002 * 113.47049 * 218.09901 * 24 15 14 43 43 H 1.09002 * 109.49396 * 56.85669 * 25 12 11 44 44 H 1.09000 * 109.49296 * 176.93773 * 25 12 11 45 45 H 1.09001 * 109.63012 * 248.50044 * 26 9 7 46 46 H 1.09004 * 109.63157 * 9.07995 * 26 9 7 47 47 H 1.08002 * 120.50482 * 179.73277 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 3.3672 1.2521 -0.0005 5 6 4.0051 2.4079 0.0000 6 6 3.2605 3.5942 0.0005 7 6 3.9307 4.9096 0.0016 8 8 3.5834 5.7680 0.7894 9 7 4.9276 5.1587 -0.8705 10 6 5.5527 6.4881 -0.9427 11 6 5.5530 6.9470 -2.4048 12 7 6.1866 5.9166 -3.2381 13 6 6.3620 6.3896 -4.6177 14 6 7.0204 5.3675 -5.5547 15 7 7.7827 6.4778 -6.1455 16 6 8.3600 6.7417 -7.3588 17 1 8.2986 6.0151 -8.1556 18 6 9.0242 7.9430 -7.5648 19 7 9.0987 8.8287 -6.5941 20 14 9.8124 8.3028 -9.2198 21 1 8.7714 8.2823 -10.2786 22 1 10.4532 9.6419 -9.1822 23 1 10.8385 7.2705 -9.5143 24 6 7.6575 7.1771 -4.8579 25 6 5.4244 4.6613 -3.2048 26 6 5.4188 4.1086 -1.7755 27 6 1.8631 3.4993 0.0059 28 7 1.3030 2.3039 0.0001 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 5.0846 2.4383 0.0000 33 1 6.5778 6.4311 -0.5766 34 1 4.9865 7.1956 -0.3369 35 1 6.1102 7.8797 -2.4930 36 1 4.5266 7.1033 -2.7371 37 1 5.4695 6.8622 -5.0278 38 1 6.3214 4.9024 -6.2497 39 1 7.6447 4.6404 -5.0353 40 1 9.5631 9.6680 -6.7378 41 1 8.4513 6.9325 -4.1521 42 1 7.5002 8.2508 -4.9605 43 1 4.3999 4.8493 -3.5260 44 1 5.8884 3.9362 -3.8734 45 1 6.4311 3.8229 -1.4896 46 1 4.7612 3.2410 -1.7210 47 1 1.2532 4.3906 0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941626265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:35 Heat of formation + Delta-G solvation = 78.324344 kcal Electronic energy + Delta-G solvation = -30311.392049 eV Core-core repulsion = 26112.401324 eV Total energy + Delta-G solvation = -4198.990725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.92282 -40.32194 -38.98053 -38.48041 -36.96838 -34.56522 -34.01544 -32.50988 -31.87504 -31.00714 -28.43281 -28.00898 -26.51825 -25.42610 -24.83640 -24.63982 -23.24719 -22.77104 -21.56082 -19.65245 -19.35470 -19.14642 -18.64171 -17.58828 -16.93838 -16.80432 -16.45402 -15.70092 -15.57495 -15.30070 -15.01874 -14.95476 -14.82292 -14.37362 -14.31325 -14.26933 -14.06450 -13.82923 -13.05360 -12.77375 -12.52853 -12.44917 -12.34399 -12.16824 -11.84313 -11.67844 -11.65557 -11.41872 -11.31511 -11.13452 -11.02918 -10.80738 -10.70969 -10.24027 -10.07880 -9.80638 -9.78125 -9.50525 -9.23484 -8.95893 -8.82449 -8.10249 -6.91097 -5.79496 -3.12266 0.15985 0.48970 2.02075 2.29317 2.63225 3.20217 3.38040 3.41807 3.43442 3.44934 3.92210 3.97896 4.05400 4.11299 4.45686 4.48595 4.70585 4.74022 4.78621 4.83524 4.99125 5.06945 5.10349 5.18096 5.24407 5.30118 5.35631 5.43570 5.49920 5.58115 5.60389 5.74997 5.83720 5.86865 5.98705 6.08747 6.21815 6.33069 6.54653 6.56055 6.60135 6.96254 7.10747 7.19052 7.23266 7.46554 7.50504 7.61710 7.77968 7.95174 9.01084 9.67311 10.60980 11.37999 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.002068 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.740779 B =13533.611806 C =14451.429573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.285 6.285 3 C 0.513 3.487 4 N -0.522 5.522 5 C 0.223 3.777 6 C -0.276 4.276 7 C 0.575 3.425 8 O -0.533 6.533 9 N -0.601 5.601 10 C 0.119 3.881 11 C 0.043 3.957 12 N -0.521 5.521 13 C 0.019 3.981 14 C 0.128 3.872 15 N -0.610 5.610 16 C -0.218 4.218 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.173 3.827 25 C 0.041 3.959 26 C 0.103 3.897 27 C 0.241 3.759 28 N -0.567 5.567 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.186 0.814 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.255 0.745 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.034 0.966 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.673 -13.526 15.535 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.185 6.185 3 C 0.212 3.788 4 N -0.246 5.246 5 C 0.055 3.945 6 C -0.284 4.284 7 C 0.361 3.639 8 O -0.410 6.410 9 N -0.334 5.334 10 C -0.003 4.003 11 C -0.086 4.086 12 N -0.247 5.247 13 C -0.090 4.090 14 C 0.001 3.999 15 N -0.336 5.336 16 C -0.345 4.345 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.047 3.953 25 C -0.088 4.088 26 C -0.020 4.020 27 C 0.075 3.925 28 N -0.296 5.296 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.202 0.798 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -15.643 -14.205 15.868 26.425 hybrid contribution -0.047 1.174 -1.275 1.733 sum -15.691 -13.032 14.593 25.080 Atomic orbital electron populations 1.23090 0.75117 1.03950 1.03195 1.86082 1.23828 1.22510 1.86083 1.20954 0.86251 0.84966 0.86669 1.67656 1.07415 1.29714 1.19861 1.23462 1.00877 0.84785 0.85344 1.21534 0.97034 0.96296 1.13542 1.17659 0.79405 0.86096 0.80739 1.90819 1.64590 1.46824 1.38765 1.48120 1.35111 1.13440 1.36705 1.21834 0.98728 0.82809 0.96961 1.22444 0.97865 0.96171 0.92096 1.62151 1.48065 1.03057 1.11435 1.24083 0.99247 1.00355 0.85292 1.22415 0.93073 0.91991 0.92405 1.45361 1.63977 1.15768 1.08504 1.18847 1.28103 1.00874 0.86693 0.90158 1.24806 1.00830 0.96752 0.98029 1.69811 1.46881 1.08616 1.31265 0.86174 0.79147 0.77285 0.82988 1.21072 1.21503 1.21107 1.22033 0.89920 0.97413 0.85909 1.22416 0.96822 0.93915 0.95643 1.22215 1.00428 0.89809 0.89581 1.23072 0.90858 0.94557 0.84030 1.68167 1.40765 0.98976 1.21700 0.91589 0.91520 0.87524 0.79752 0.90064 0.88629 0.88742 0.94725 0.91618 0.94761 0.94222 0.93535 0.94758 0.91411 0.94789 0.89003 0.89460 0.89965 0.80192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.35 101.05 1.05 1.28 16 2 O -0.28 -2.73 10.55 -17.56 -0.19 -2.92 16 3 C 0.51 5.39 8.48 -90.99 -0.77 4.62 16 4 N -0.52 -5.49 10.45 -14.39 -0.15 -5.64 16 5 C 0.22 1.92 8.67 -16.79 -0.15 1.77 16 6 C -0.28 -2.58 5.08 -104.70 -0.53 -3.11 16 7 C 0.57 6.35 7.31 -12.43 -0.09 6.26 16 8 O -0.53 -7.52 16.51 5.29 0.09 -7.44 16 9 N -0.60 -6.21 3.01 -173.65 -0.52 -6.74 16 10 C 0.12 1.30 6.58 -3.60 -0.02 1.27 16 11 C 0.04 0.54 5.61 -3.70 -0.02 0.52 16 12 N -0.52 -7.35 4.62 -226.11 -1.05 -8.40 16 13 C 0.02 0.34 3.52 -67.59 -0.24 0.10 16 14 C 0.13 2.53 7.12 -8.51 -0.06 2.47 16 15 N -0.61 -15.49 3.78 -184.79 -0.70 -16.19 16 16 C -0.22 -6.06 10.75 -15.06 -0.16 -6.23 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.02 11.50 55.49 0.64 -26.38 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.17 3.97 7.22 -8.51 -0.06 3.91 16 25 C 0.04 0.47 5.46 -3.70 -0.02 0.45 16 26 C 0.10 0.92 5.44 -3.60 -0.02 0.90 16 27 C 0.24 2.17 11.03 -16.79 -0.19 1.99 16 28 N -0.57 -5.50 9.19 -14.39 -0.13 -5.63 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.19 1.12 6.95 -52.49 -0.36 0.75 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.07 7.09 -51.93 -0.37 0.70 16 35 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 36 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.76 7.91 -51.93 -0.41 0.35 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.73 7.12 -51.93 -0.37 1.36 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 1.04 6.83 -51.93 -0.35 0.68 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.63 4.61 -51.93 -0.24 0.39 16 47 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -34.08 382.74 -9.37 -43.45 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.72 Total: -2.67 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -1.38 Total: 15.90 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.91 Total: -68.98 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.10 Total: -10.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.08 -9.37 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941626265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.773 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds