Wall clock time and date at job start Wed Apr 1 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35290 * 117.00415 * 2 1 4 4 N 1.32467 * 119.02612 * 180.02562 * 3 2 1 5 5 C 1.32013 * 120.91813 * 180.02562 * 4 3 2 6 6 C 1.40058 * 118.98753 * 359.97438 * 5 4 3 7 7 C 1.47632 * 120.88351 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99683 * 228.39446 * 7 6 5 9 9 N 1.34770 * 120.00262 * 48.38762 * 7 6 5 10 10 C 1.47079 * 120.88127 * 176.20689 * 9 7 6 11 11 C 1.53241 * 108.52028 * 231.20541 * 10 9 7 12 12 N 1.46895 * 109.34326 * 306.17256 * 11 10 9 13 13 C 1.46904 * 111.00023 * 187.25314 * 12 11 10 14 14 C 1.53496 * 114.20681 * 179.97438 * 13 12 11 15 15 N 1.47068 * 87.98581 * 220.15050 * 14 13 12 16 16 C 1.36933 * 136.05548 * 206.87049 * 15 14 13 17 17 H 1.08004 * 120.00048 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99917 * 179.97438 * 16 15 14 19 19 N 1.31611 * 120.00148 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46814 * 60.00329 * 20 18 16 22 22 H 1.48503 * 109.47036 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47407 * 300.00308 * 20 18 16 24 24 C 1.47063 * 87.88527 * 27.11880 * 15 14 13 25 25 C 1.46894 * 111.26983 * 63.10155 * 12 11 10 26 26 C 1.47077 * 120.88190 * 356.23024 * 9 7 6 27 27 C 1.40057 * 118.23446 * 0.25331 * 6 5 4 28 28 N 1.32017 * 118.98785 * 359.49146 * 27 6 5 29 29 H 1.09003 * 109.46789 * 299.99682 * 1 2 3 30 30 H 1.08998 * 109.47303 * 59.99738 * 1 2 3 31 31 H 1.08999 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.07992 * 120.50671 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.63027 * 111.49784 * 10 9 7 34 34 H 1.08996 * 109.79145 * 351.01376 * 10 9 7 35 35 H 1.09005 * 109.48970 * 186.20864 * 11 10 9 36 36 H 1.09008 * 109.49049 * 66.13444 * 11 10 9 37 37 H 1.08995 * 113.28042 * 313.06360 * 13 12 11 38 38 H 1.08995 * 113.46862 * 105.36257 * 14 13 12 39 39 H 1.09001 * 113.51774 * 334.93510 * 14 13 12 40 40 H 0.96999 * 120.00355 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.47042 * 87.66444 * 24 15 14 42 42 H 1.09002 * 113.47049 * 218.09901 * 24 15 14 43 43 H 1.09002 * 109.49396 * 56.85669 * 25 12 11 44 44 H 1.09000 * 109.49296 * 176.93773 * 25 12 11 45 45 H 1.09001 * 109.63012 * 248.50044 * 26 9 7 46 46 H 1.09004 * 109.63157 * 9.07995 * 26 9 7 47 47 H 1.08002 * 120.50482 * 179.73277 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 3.3672 1.2521 -0.0005 5 6 4.0051 2.4079 0.0000 6 6 3.2605 3.5942 0.0005 7 6 3.9307 4.9096 0.0016 8 8 3.5834 5.7680 0.7894 9 7 4.9276 5.1587 -0.8705 10 6 5.5527 6.4881 -0.9427 11 6 5.5530 6.9470 -2.4048 12 7 6.1866 5.9166 -3.2381 13 6 6.3620 6.3896 -4.6177 14 6 7.0204 5.3675 -5.5547 15 7 7.7827 6.4778 -6.1455 16 6 8.3600 6.7417 -7.3588 17 1 8.2986 6.0151 -8.1556 18 6 9.0242 7.9430 -7.5648 19 7 9.0987 8.8287 -6.5941 20 14 9.8124 8.3028 -9.2198 21 1 8.7714 8.2823 -10.2786 22 1 10.4532 9.6419 -9.1822 23 1 10.8385 7.2705 -9.5143 24 6 7.6575 7.1771 -4.8579 25 6 5.4244 4.6613 -3.2048 26 6 5.4188 4.1086 -1.7755 27 6 1.8631 3.4993 0.0059 28 7 1.3030 2.3039 0.0001 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 5.0846 2.4383 0.0000 33 1 6.5778 6.4311 -0.5766 34 1 4.9865 7.1956 -0.3369 35 1 6.1102 7.8797 -2.4930 36 1 4.5266 7.1033 -2.7371 37 1 5.4695 6.8622 -5.0278 38 1 6.3214 4.9024 -6.2497 39 1 7.6447 4.6404 -5.0353 40 1 9.5631 9.6680 -6.7378 41 1 8.4513 6.9325 -4.1521 42 1 7.5002 8.2508 -4.9605 43 1 4.3999 4.8493 -3.5260 44 1 5.8884 3.9362 -3.8734 45 1 6.4311 3.8229 -1.4896 46 1 4.7612 3.2410 -1.7210 47 1 1.2532 4.3906 0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941626265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:33 Heat of formation + Delta-G solvation = 50.901113 kcal Electronic energy + Delta-G solvation = -30312.581210 eV Core-core repulsion = 26112.401324 eV Total energy + Delta-G solvation = -4200.179886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.64199 -41.24110 -40.23841 -39.29238 -38.18929 -35.47878 -35.02626 -33.99031 -33.13825 -31.87240 -29.86681 -28.74397 -27.82771 -26.61602 -25.96254 -25.45418 -24.39254 -24.29303 -22.58347 -20.85725 -20.44105 -20.00410 -19.38620 -18.79953 -18.37021 -17.62209 -17.39114 -16.92357 -16.58693 -16.38168 -16.35281 -16.04822 -15.79578 -15.56815 -15.23845 -15.13140 -14.98779 -14.72827 -14.40066 -14.14854 -13.82245 -13.39535 -13.32705 -13.13004 -12.95503 -12.92985 -12.83431 -12.63324 -12.58095 -12.42299 -12.22124 -12.17570 -12.08323 -11.79298 -11.70742 -11.10508 -10.97593 -10.84738 -10.49089 -10.22791 -9.87517 -9.26594 -8.92204 -7.90481 -5.24462 -0.56227 -0.18272 1.40882 1.45146 1.46438 1.50067 1.56170 1.79895 2.44702 2.48705 2.78820 2.85850 3.21149 3.31266 3.35318 3.47998 3.54075 3.66262 3.80300 3.87861 4.04654 4.19127 4.24387 4.33098 4.35419 4.37350 4.39113 4.51550 4.56556 4.66416 4.70556 4.74710 4.81345 4.84548 4.87950 4.91624 4.97346 5.10133 5.27403 5.33399 5.38355 5.42013 5.52122 5.88929 5.91656 6.10629 6.13692 6.28067 6.77145 6.90950 6.92306 7.59959 8.60835 9.27002 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.002068 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.740779 B =13533.611806 C =14451.429573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.299 6.299 3 C 0.503 3.497 4 N -0.540 5.540 5 C 0.231 3.769 6 C -0.280 4.280 7 C 0.582 3.418 8 O -0.566 6.566 9 N -0.599 5.599 10 C 0.126 3.874 11 C 0.046 3.954 12 N -0.524 5.524 13 C 0.055 3.945 14 C 0.134 3.866 15 N -0.645 5.645 16 C -0.229 4.229 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.981 3.019 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.276 1.276 24 C 0.173 3.827 25 C 0.040 3.960 26 C 0.109 3.891 27 C 0.240 3.760 28 N -0.571 5.571 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.211 0.789 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.249 0.751 41 H 0.022 0.978 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 -15.496 15.690 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.200 6.200 3 C 0.202 3.798 4 N -0.266 5.266 5 C 0.064 3.936 6 C -0.288 4.288 7 C 0.369 3.631 8 O -0.446 6.446 9 N -0.331 5.331 10 C 0.004 3.996 11 C -0.083 4.083 12 N -0.249 5.249 13 C -0.054 4.054 14 C 0.008 3.992 15 N -0.371 5.371 16 C -0.357 4.357 17 H 0.104 0.896 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.809 3.191 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.202 1.202 24 C 0.047 3.953 25 C -0.089 4.089 26 C -0.013 4.013 27 C 0.074 3.926 28 N -0.300 5.300 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.228 0.772 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -16.395 -16.234 16.027 28.093 hybrid contribution 0.102 1.715 -1.270 2.137 sum -16.293 -14.518 14.758 26.345 Atomic orbital electron populations 1.23352 0.73324 1.05789 1.03282 1.86078 1.25674 1.22389 1.85824 1.21210 0.86564 0.85447 0.86575 1.67717 1.07639 1.30437 1.20758 1.23844 1.01873 0.83927 0.83973 1.21392 0.97156 0.95656 1.14641 1.17774 0.78977 0.86196 0.80124 1.90809 1.65528 1.48055 1.40186 1.48152 1.34828 1.13440 1.36666 1.21703 0.99199 0.83289 0.95390 1.22426 0.97349 0.95552 0.92926 1.62049 1.49582 1.04368 1.08918 1.23452 0.96510 0.98078 0.87374 1.22516 0.92710 0.91363 0.92585 1.45747 1.64388 1.18412 1.08582 1.19269 1.27460 1.00944 0.88064 0.89572 1.25680 1.02033 0.96827 1.01608 1.70012 1.48038 1.08823 1.33241 0.85113 0.78320 0.76694 0.78964 1.20101 1.22085 1.20212 1.21915 0.92273 0.95889 0.85220 1.22526 0.96340 0.92402 0.97617 1.22297 1.01856 0.89627 0.87545 1.23361 0.91119 0.94858 0.83225 1.68222 1.40662 0.98988 1.22132 0.91444 0.91427 0.84881 0.77231 0.89363 0.88765 0.89775 0.94864 0.92260 0.93351 0.92781 0.94239 0.95981 0.94981 0.94821 0.88321 0.87796 0.88044 0.78816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.35 113.37 1.17 1.53 16 2 O -0.30 -5.34 10.55 -85.76 -0.90 -6.25 16 3 C 0.50 9.83 8.48 180.48 1.53 11.37 16 4 N -0.54 -10.33 10.45 -312.42 -3.26 -13.59 16 5 C 0.23 3.38 8.67 85.11 0.74 4.12 16 6 C -0.28 -4.66 5.08 -19.91 -0.10 -4.76 16 7 C 0.58 11.73 7.31 86.72 0.63 12.37 16 8 O -0.57 -15.31 16.51 -3.97 -0.07 -15.38 16 9 N -0.60 -10.99 3.01 -821.59 -2.47 -13.46 16 10 C 0.13 2.58 6.58 86.35 0.57 3.15 16 11 C 0.05 1.12 5.61 86.38 0.48 1.60 16 12 N -0.52 -13.95 4.62 -869.28 -4.02 -17.97 16 13 C 0.06 1.94 3.52 45.39 0.16 2.10 16 14 C 0.13 5.10 7.12 83.18 0.59 5.69 16 15 N -0.64 -32.91 3.78 -738.55 -2.79 -35.70 16 16 C -0.23 -12.82 10.75 84.03 0.90 -11.92 16 17 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 19 N -0.95 -57.61 11.50 21.65 0.25 -57.36 16 20 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 24 C 0.17 8.12 7.22 83.18 0.60 8.72 16 25 C 0.04 0.80 5.46 86.38 0.47 1.27 16 26 C 0.11 1.60 5.44 86.35 0.47 2.07 16 27 C 0.24 3.93 11.03 85.11 0.94 4.87 16 28 N -0.57 -10.22 9.19 -312.41 -2.87 -13.09 16 29 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 31 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.21 1.81 6.95 -2.91 -0.02 1.79 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 2.01 7.09 -2.39 -0.02 1.99 16 35 H 0.08 2.22 8.11 -2.38 -0.02 2.20 16 36 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.95 7.91 -2.39 -0.02 1.93 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 42 H 0.03 1.71 7.12 -2.39 -0.02 1.69 16 43 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.10 1.90 6.83 -2.39 -0.02 1.88 16 45 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 46 H 0.10 1.17 4.61 -2.38 -0.01 1.16 16 47 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -74.61 382.74 -3.49 -78.10 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.99 Total: 8.50 kcal Atomic # 6 Polarization: 29.12 SS G_CDS: 9.63 Total: 38.75 kcal Atomic # 7 Polarization: -136.01 SS G_CDS: -15.17 Total: -151.18 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.97 Total: -21.63 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -74.61 -3.49 -78.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941626265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.997 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds