Wall clock time and date at job start Wed Apr 1 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35515 * 116.99792 * 2 1 4 4 C 1.39353 * 120.02619 * 180.02562 * 3 2 1 5 5 C 1.38426 * 118.03580 * 179.70449 * 4 3 2 6 6 C 1.39975 * 117.96612 * 0.52562 * 5 4 3 7 7 C 1.47935 * 120.11626 * 179.73694 * 6 5 4 8 8 O 1.21540 * 120.00158 * 13.81113 * 7 6 5 9 9 N 1.34784 * 120.00102 * 193.81143 * 7 6 5 10 10 C 1.47077 * 120.88181 * 180.28578 * 9 7 6 11 11 C 1.53241 * 108.52269 * 231.20890 * 10 9 7 12 12 N 1.46897 * 109.33615 * 306.17131 * 11 10 9 13 13 C 1.46906 * 110.99740 * 187.25502 * 12 11 10 14 14 C 1.53945 * 113.73927 * 273.74053 * 13 12 11 15 15 N 1.47815 * 86.03458 * 222.08543 * 14 13 12 16 16 C 1.36938 * 134.45499 * 204.64518 * 15 14 13 17 17 H 1.08007 * 119.99659 * 179.86136 * 16 15 14 18 18 C 1.38810 * 120.00268 * 359.86822 * 16 15 14 19 19 N 1.31624 * 119.99836 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00280 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46869 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46977 * 119.99696 * 20 18 16 23 23 H 1.48496 * 109.47036 * 240.00034 * 20 18 16 24 24 C 1.47577 * 91.05228 * 24.55005 * 15 14 13 25 25 C 1.46893 * 111.27247 * 63.10452 * 12 11 10 26 26 C 1.47079 * 120.87882 * 0.31048 * 9 7 6 27 27 N 1.32754 * 119.77281 * 359.46302 * 6 5 4 28 28 N 1.28363 * 122.08278 * 0.27549 * 27 6 5 29 29 H 1.08998 * 109.47637 * 59.99566 * 1 2 3 30 30 H 1.09007 * 109.47137 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46931 * 299.99513 * 1 2 3 32 32 H 1.07997 * 120.98430 * 359.97438 * 4 3 2 33 33 H 1.07992 * 121.01538 * 180.26682 * 5 4 3 34 34 H 1.09003 * 109.62658 * 111.49368 * 10 9 7 35 35 H 1.09005 * 109.62949 * 350.91595 * 10 9 7 36 36 H 1.08997 * 109.49080 * 186.21402 * 11 10 9 37 37 H 1.08994 * 109.49002 * 66.12954 * 11 10 9 38 38 H 1.08999 * 112.94022 * 45.33308 * 13 12 11 39 39 H 1.09003 * 113.76850 * 336.34738 * 14 13 12 40 40 H 1.09000 * 113.77044 * 107.74794 * 14 13 12 41 41 H 0.96994 * 119.99899 * 180.02562 * 19 18 16 42 42 H 1.09004 * 113.77368 * 221.15294 * 24 15 14 43 43 H 1.08994 * 113.87643 * 89.76977 * 24 15 14 44 44 H 1.08996 * 109.49081 * 56.85391 * 25 12 11 45 45 H 1.09000 * 109.49367 * 176.93142 * 25 12 11 46 46 H 1.09003 * 109.62334 * 248.50044 * 26 9 7 47 47 H 1.08999 * 109.63118 * 9.07854 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4357 1.2811 -0.0005 5 6 4.0209 2.5356 -0.0068 6 6 3.1780 3.6531 -0.0009 7 6 3.7527 5.0162 -0.0013 8 8 4.9294 5.1796 -0.2579 9 7 2.9714 6.0771 0.2829 10 6 3.5210 7.4413 0.2818 11 6 3.1434 8.1193 1.6032 12 7 1.6894 8.0355 1.7948 13 6 1.2661 8.8214 2.9615 14 6 1.3480 8.0500 4.2912 15 7 0.0438 8.6675 4.6115 16 6 -0.6175 8.9638 5.7735 17 1 -1.5903 9.4316 5.7369 18 6 -0.0376 8.6630 6.9982 19 7 1.1478 8.0926 7.0427 20 14 -0.9394 9.0677 8.5832 21 1 -2.2438 9.7011 8.2627 22 1 -1.1706 7.8195 9.3537 23 1 -0.1204 10.0049 9.3932 24 6 -0.2581 8.8387 3.1771 25 6 1.2468 6.6398 1.9115 26 6 1.5466 5.9011 0.6027 27 7 1.8611 3.4855 -0.0004 28 7 1.3221 2.3206 0.0000 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 4.0398 0.3859 -0.0005 33 1 5.0949 2.6486 -0.0118 34 1 3.1014 8.0045 -0.5518 35 1 4.6063 7.3988 0.1892 36 1 3.4469 9.1658 1.5748 37 1 3.6485 7.6159 2.4275 38 1 1.7257 9.8091 2.9980 39 1 1.3044 6.9671 4.1743 40 1 2.1612 8.3768 4.9393 41 1 1.5529 7.8820 7.8985 42 1 -0.7249 9.7941 2.9373 43 1 -0.7747 7.9892 2.7306 44 1 1.7782 6.1570 2.7315 45 1 0.1747 6.6133 2.1067 46 1 0.9372 6.3163 -0.2000 47 1 1.3265 4.8403 0.7222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941630587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:03 Heat of formation + Delta-G solvation = 95.332791 kcal Electronic energy + Delta-G solvation = -30855.437898 eV Core-core repulsion = 26657.184715 eV Total energy + Delta-G solvation = -4198.253183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.83268 -40.19883 -39.06841 -38.53695 -36.65548 -34.01425 -33.59401 -32.51920 -31.73244 -30.82282 -28.27268 -27.94836 -26.56208 -25.32579 -24.82365 -24.46012 -23.53861 -22.68004 -21.61438 -19.92310 -19.08006 -18.73506 -18.30719 -17.20640 -16.82566 -16.80455 -16.30288 -15.68308 -15.30006 -15.05800 -14.98034 -14.90168 -14.70867 -14.52089 -14.33666 -14.18449 -13.77584 -13.72482 -13.09115 -12.74172 -12.41350 -12.29792 -12.23157 -12.01185 -11.79059 -11.57953 -11.47125 -11.15563 -10.98472 -10.82075 -10.75512 -10.68479 -10.52446 -10.20969 -10.12617 -9.88065 -9.75197 -9.48904 -9.47365 -8.81287 -8.70557 -7.77747 -6.84125 -5.76224 -3.08614 0.13649 0.29177 2.35941 2.39570 2.73311 3.24393 3.38453 3.43681 3.46420 3.49478 3.79384 4.16485 4.21475 4.41080 4.43579 4.51311 4.80231 4.89789 4.93475 5.06960 5.14367 5.20787 5.22467 5.29004 5.40279 5.43935 5.47520 5.51201 5.53503 5.68388 5.76220 5.89990 5.98918 6.08707 6.16953 6.28748 6.38477 6.45707 6.52851 6.60109 6.66231 7.02740 7.22212 7.26174 7.43214 7.55186 7.65407 7.84040 7.98499 8.08413 9.04680 9.71328 10.60580 11.40566 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.002739 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.206785 B =10219.150669 C =11709.534406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.297 6.297 3 C 0.280 3.720 4 C -0.137 4.137 5 C -0.031 4.031 6 C -0.002 4.002 7 C 0.578 3.422 8 O -0.539 6.539 9 N -0.585 5.585 10 C 0.116 3.884 11 C 0.043 3.957 12 N -0.530 5.530 13 C 0.034 3.966 14 C 0.133 3.867 15 N -0.610 5.610 16 C -0.219 4.219 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.126 3.874 25 C 0.037 3.963 26 C 0.078 3.922 27 N -0.161 5.161 28 N -0.303 5.303 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.252 0.748 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 -13.933 -18.330 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.200 6.200 3 C 0.096 3.904 4 C -0.166 4.166 5 C -0.059 4.059 6 C -0.150 4.150 7 C 0.363 3.637 8 O -0.415 6.415 9 N -0.316 5.316 10 C -0.006 4.006 11 C -0.086 4.086 12 N -0.254 5.254 13 C -0.074 4.074 14 C 0.006 3.994 15 N -0.336 5.336 16 C -0.347 4.347 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.000 4.000 25 C -0.091 4.091 26 C -0.045 4.045 27 N -0.009 5.009 28 N -0.160 5.160 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.182 0.818 33 H 0.188 0.812 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.323 -13.276 -18.542 23.045 hybrid contribution 0.873 -0.795 1.812 2.163 sum 4.196 -14.070 -16.729 22.259 Atomic orbital electron populations 1.23108 0.75912 1.03928 1.03397 1.86217 1.23943 1.23166 1.86676 1.21650 0.91046 0.87140 0.90597 1.21559 0.92250 0.99928 1.02883 1.22263 1.02956 0.89945 0.90747 1.22740 0.92051 0.96265 1.03964 1.17436 0.85469 0.82832 0.78007 1.90789 1.15272 1.85011 1.50475 1.48076 1.11301 1.06246 1.65941 1.21865 0.99946 0.80485 0.98308 1.22394 0.89248 1.00977 0.96021 1.62064 1.11654 1.10575 1.41112 1.24281 0.97518 0.97534 0.88089 1.22938 0.90644 0.94817 0.91036 1.45830 1.18616 1.69766 0.99416 1.19066 1.00226 1.33143 0.82277 0.90137 1.24787 0.97183 1.01142 0.97467 1.69840 1.15854 1.47202 1.24036 0.86050 0.78727 0.77491 0.83540 1.20414 1.21804 1.21730 1.22651 0.93238 0.98323 0.85780 1.22626 1.02078 0.88519 0.95926 1.23190 0.79087 1.05013 0.97228 1.72930 1.09654 1.12722 1.05560 1.73250 1.31641 0.94195 1.16942 0.91537 0.87835 0.91355 0.81755 0.81230 0.90351 0.88810 0.89515 0.94177 0.88329 0.95234 0.91375 0.93801 0.93683 0.94493 0.93824 0.88936 0.90448 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.39 101.05 1.05 1.25 16 2 O -0.30 -2.55 10.48 -18.24 -0.19 -2.74 16 3 C 0.28 2.74 7.57 -16.77 -0.13 2.61 16 4 C -0.14 -1.07 10.14 -39.10 -0.40 -1.47 16 5 C -0.03 -0.28 9.71 -38.86 -0.38 -0.66 16 6 C 0.00 -0.03 6.66 -82.85 -0.55 -0.58 16 7 C 0.58 7.88 7.67 -12.28 -0.09 7.79 16 8 O -0.54 -8.26 15.92 5.33 0.08 -8.17 16 9 N -0.58 -7.82 3.01 -173.54 -0.52 -8.34 16 10 C 0.12 1.45 6.60 -3.60 -0.02 1.42 16 11 C 0.04 0.59 5.61 -3.70 -0.02 0.57 16 12 N -0.53 -8.31 4.76 -228.25 -1.09 -9.40 16 13 C 0.03 0.65 4.03 -69.92 -0.28 0.37 16 14 C 0.13 3.13 6.81 -2.84 -0.02 3.11 16 15 N -0.61 -15.75 3.70 -177.88 -0.66 -16.41 16 16 C -0.22 -6.21 10.70 -15.06 -0.16 -6.38 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -27.68 11.39 55.49 0.63 -27.05 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.13 2.61 8.42 -2.97 -0.02 2.58 16 25 C 0.04 0.58 4.47 -3.70 -0.02 0.56 16 26 C 0.08 1.03 6.17 -3.60 -0.02 1.01 16 27 N -0.16 -1.99 7.32 33.32 0.24 -1.74 16 28 N -0.30 -3.51 10.40 30.55 0.32 -3.19 16 29 H 0.07 0.42 8.11 -51.93 -0.42 -0.01 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.47 8.11 -51.92 -0.42 0.05 16 32 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.17 1.24 7.78 -52.49 -0.41 0.83 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.16 7.06 -51.93 -0.37 0.79 16 36 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.85 8.04 -51.93 -0.42 1.43 16 39 H 0.03 0.72 5.65 -51.93 -0.29 0.43 16 40 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.74 6.22 -51.93 -0.32 0.42 16 44 H 0.04 0.77 6.45 -51.93 -0.33 0.44 16 45 H 0.09 1.51 6.06 -51.93 -0.31 1.19 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.14 1.85 3.88 -143.02 -0.55 1.30 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -33.77 375.79 -8.43 -42.20 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.73 Total: 0.05 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.16 Total: 11.81 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -1.07 Total: -66.13 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.11 Total: -10.92 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.77 -8.43 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941630587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.538 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds