Wall clock time and date at job start Wed Apr 1 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35515 * 116.99792 * 2 1 4 4 C 1.39353 * 120.02619 * 180.02562 * 3 2 1 5 5 C 1.38426 * 118.03580 * 179.70449 * 4 3 2 6 6 C 1.39975 * 117.96612 * 0.52562 * 5 4 3 7 7 C 1.47935 * 120.11626 * 179.73694 * 6 5 4 8 8 O 1.21540 * 120.00158 * 13.81113 * 7 6 5 9 9 N 1.34784 * 120.00102 * 193.81143 * 7 6 5 10 10 C 1.47077 * 120.88181 * 180.28578 * 9 7 6 11 11 C 1.53241 * 108.52269 * 231.20890 * 10 9 7 12 12 N 1.46897 * 109.33615 * 306.17131 * 11 10 9 13 13 C 1.46906 * 110.99740 * 187.25502 * 12 11 10 14 14 C 1.53945 * 113.73927 * 273.74053 * 13 12 11 15 15 N 1.47815 * 86.03458 * 222.08543 * 14 13 12 16 16 C 1.36938 * 134.45499 * 204.64518 * 15 14 13 17 17 H 1.08007 * 119.99659 * 179.86136 * 16 15 14 18 18 C 1.38810 * 120.00268 * 359.86822 * 16 15 14 19 19 N 1.31624 * 119.99836 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00280 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46869 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46977 * 119.99696 * 20 18 16 23 23 H 1.48496 * 109.47036 * 240.00034 * 20 18 16 24 24 C 1.47577 * 91.05228 * 24.55005 * 15 14 13 25 25 C 1.46893 * 111.27247 * 63.10452 * 12 11 10 26 26 C 1.47079 * 120.87882 * 0.31048 * 9 7 6 27 27 N 1.32754 * 119.77281 * 359.46302 * 6 5 4 28 28 N 1.28363 * 122.08278 * 0.27549 * 27 6 5 29 29 H 1.08998 * 109.47637 * 59.99566 * 1 2 3 30 30 H 1.09007 * 109.47137 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46931 * 299.99513 * 1 2 3 32 32 H 1.07997 * 120.98430 * 359.97438 * 4 3 2 33 33 H 1.07992 * 121.01538 * 180.26682 * 5 4 3 34 34 H 1.09003 * 109.62658 * 111.49368 * 10 9 7 35 35 H 1.09005 * 109.62949 * 350.91595 * 10 9 7 36 36 H 1.08997 * 109.49080 * 186.21402 * 11 10 9 37 37 H 1.08994 * 109.49002 * 66.12954 * 11 10 9 38 38 H 1.08999 * 112.94022 * 45.33308 * 13 12 11 39 39 H 1.09003 * 113.76850 * 336.34738 * 14 13 12 40 40 H 1.09000 * 113.77044 * 107.74794 * 14 13 12 41 41 H 0.96994 * 119.99899 * 180.02562 * 19 18 16 42 42 H 1.09004 * 113.77368 * 221.15294 * 24 15 14 43 43 H 1.08994 * 113.87643 * 89.76977 * 24 15 14 44 44 H 1.08996 * 109.49081 * 56.85391 * 25 12 11 45 45 H 1.09000 * 109.49367 * 176.93142 * 25 12 11 46 46 H 1.09003 * 109.62334 * 248.50044 * 26 9 7 47 47 H 1.08999 * 109.63118 * 9.07854 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4357 1.2811 -0.0005 5 6 4.0209 2.5356 -0.0068 6 6 3.1780 3.6531 -0.0009 7 6 3.7527 5.0162 -0.0013 8 8 4.9294 5.1796 -0.2579 9 7 2.9714 6.0771 0.2829 10 6 3.5210 7.4413 0.2818 11 6 3.1434 8.1193 1.6032 12 7 1.6894 8.0355 1.7948 13 6 1.2661 8.8214 2.9615 14 6 1.3480 8.0500 4.2912 15 7 0.0438 8.6675 4.6115 16 6 -0.6175 8.9638 5.7735 17 1 -1.5903 9.4316 5.7369 18 6 -0.0376 8.6630 6.9982 19 7 1.1478 8.0926 7.0427 20 14 -0.9394 9.0677 8.5832 21 1 -2.2438 9.7011 8.2627 22 1 -1.1706 7.8195 9.3537 23 1 -0.1204 10.0049 9.3932 24 6 -0.2581 8.8387 3.1771 25 6 1.2468 6.6398 1.9115 26 6 1.5466 5.9011 0.6027 27 7 1.8611 3.4855 -0.0004 28 7 1.3221 2.3206 0.0000 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 4.0398 0.3859 -0.0005 33 1 5.0949 2.6486 -0.0118 34 1 3.1014 8.0045 -0.5518 35 1 4.6063 7.3988 0.1892 36 1 3.4469 9.1658 1.5748 37 1 3.6485 7.6159 2.4275 38 1 1.7257 9.8091 2.9980 39 1 1.3044 6.9671 4.1743 40 1 2.1612 8.3768 4.9393 41 1 1.5529 7.8820 7.8985 42 1 -0.7249 9.7941 2.9373 43 1 -0.7747 7.9892 2.7306 44 1 1.7782 6.1570 2.7315 45 1 0.1747 6.6133 2.1067 46 1 0.9372 6.3163 -0.2000 47 1 1.3265 4.8403 0.7222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941630587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:59 Heat of formation + Delta-G solvation = 69.132529 kcal Electronic energy + Delta-G solvation = -30856.574027 eV Core-core repulsion = 26657.184715 eV Total energy + Delta-G solvation = -4199.389312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.64907 -41.31241 -40.35078 -39.41495 -38.02733 -35.34284 -34.42373 -33.96048 -33.16919 -31.92613 -29.81780 -28.68439 -28.00616 -26.64456 -26.29463 -25.31724 -24.64424 -24.35116 -22.85180 -21.12555 -20.20638 -19.68142 -19.27829 -18.77609 -18.18421 -17.59424 -17.48690 -16.95130 -16.70641 -16.57037 -16.21076 -15.75841 -15.72521 -15.55188 -15.48561 -15.31241 -15.13066 -14.69047 -14.41635 -13.84338 -13.80437 -13.77992 -13.41266 -13.19822 -12.99900 -12.91501 -12.72800 -12.68755 -12.61306 -12.22157 -12.15642 -11.98796 -11.87304 -11.74305 -11.47394 -11.38911 -11.17300 -10.87363 -10.62941 -10.30073 -9.85806 -9.25758 -8.87312 -7.92323 -5.26549 -0.67590 -0.42686 1.43370 1.44294 1.44651 1.55118 1.64409 1.82280 2.37958 2.43602 2.61370 2.91972 3.03652 3.27724 3.35531 3.48428 3.69462 3.76242 3.85551 3.92901 4.01864 4.13211 4.23471 4.27724 4.38596 4.38772 4.42983 4.48387 4.57443 4.64768 4.69807 4.73555 4.79272 4.82616 4.85854 4.93814 4.98588 5.04746 5.18540 5.20986 5.36769 5.42507 5.48021 5.83457 5.88750 6.02748 6.13391 6.23704 6.81120 6.88753 7.25403 7.58383 8.53996 9.24040 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.002739 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.206785 B =10219.150669 C =11709.534406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.273 3.727 4 C -0.120 4.120 5 C -0.031 4.031 6 C -0.020 4.020 7 C 0.577 3.423 8 O -0.559 6.559 9 N -0.590 5.590 10 C 0.121 3.879 11 C 0.043 3.957 12 N -0.516 5.516 13 C 0.065 3.935 14 C 0.133 3.867 15 N -0.639 5.639 16 C -0.230 4.230 17 H 0.087 0.913 18 C -0.071 4.071 19 N -0.956 5.956 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.129 3.871 25 C 0.043 3.957 26 C 0.090 3.910 27 N -0.178 5.178 28 N -0.322 5.322 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.188 0.812 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.019 0.981 38 H 0.106 0.894 39 H 0.017 0.983 40 H 0.030 0.970 41 H 0.246 0.754 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.016 0.984 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -14.595 -19.848 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C 0.089 3.911 4 C -0.149 4.149 5 C -0.058 4.058 6 C -0.168 4.168 7 C 0.363 3.637 8 O -0.437 6.437 9 N -0.321 5.321 10 C -0.001 4.001 11 C -0.085 4.085 12 N -0.240 5.240 13 C -0.044 4.044 14 C 0.006 3.994 15 N -0.366 5.366 16 C -0.359 4.359 17 H 0.104 0.896 18 C -0.263 4.263 19 N -0.606 5.606 20 Si 0.808 3.192 21 H -0.186 1.186 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.004 3.996 25 C -0.086 4.086 26 C -0.033 4.033 27 N -0.025 5.025 28 N -0.180 5.180 29 H 0.084 0.916 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.219 0.781 33 H 0.205 0.795 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.037 0.963 38 H 0.124 0.876 39 H 0.035 0.965 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.035 0.965 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.958 -13.934 -20.107 24.642 hybrid contribution 0.959 -0.698 2.225 2.521 sum 3.917 -14.633 -17.882 23.436 Atomic orbital electron populations 1.23315 0.74835 1.05730 1.02938 1.86234 1.25034 1.22402 1.86345 1.21940 0.91984 0.87069 0.90149 1.21944 0.91670 1.00705 1.00546 1.22488 1.03583 0.89553 0.90209 1.22677 0.92538 0.96156 1.05416 1.17674 0.85198 0.83470 0.77371 1.90767 1.16008 1.85469 1.51486 1.48175 1.11320 1.06709 1.65881 1.21879 1.00293 0.80169 0.97727 1.22490 0.87544 1.02243 0.96265 1.62116 1.13007 1.10363 1.38504 1.23858 0.96568 0.97312 0.86712 1.22837 0.88904 0.94483 0.93147 1.46218 1.19524 1.69984 1.00921 1.19488 1.00473 1.32368 0.83570 0.89572 1.25663 0.98112 1.01732 1.00803 1.70047 1.17468 1.48819 1.24242 0.84981 0.78096 0.76916 0.79182 1.18645 1.22098 1.21874 1.22788 0.94512 0.99375 0.82906 1.22562 1.01189 0.88330 0.96540 1.23095 0.79304 1.04901 0.95981 1.72773 1.09957 1.13393 1.06409 1.73153 1.32292 0.94571 1.17983 0.91596 0.84944 0.92218 0.78094 0.79481 0.88480 0.88453 0.87567 0.96307 0.87557 0.96522 0.95169 0.94476 0.92178 0.93244 0.96534 0.89661 0.89184 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.39 113.37 1.18 1.47 16 2 O -0.30 -4.58 10.48 -88.17 -0.92 -5.50 16 3 C 0.27 4.94 7.57 84.83 0.64 5.59 16 4 C -0.12 -1.60 10.14 22.58 0.23 -1.37 16 5 C -0.03 -0.51 9.71 22.74 0.22 -0.29 16 6 C -0.02 -0.45 6.66 42.00 0.28 -0.17 16 7 C 0.58 15.43 7.67 86.81 0.67 16.09 16 8 O -0.56 -16.76 15.92 -3.84 -0.06 -16.82 16 9 N -0.59 -15.36 3.01 -821.22 -2.47 -17.83 16 10 C 0.12 2.85 6.60 86.35 0.57 3.42 16 11 C 0.04 1.16 5.61 86.38 0.49 1.65 16 12 N -0.52 -15.79 4.76 -876.03 -4.17 -19.96 16 13 C 0.06 2.43 4.03 46.67 0.19 2.62 16 14 C 0.13 6.52 6.81 86.44 0.59 7.11 16 15 N -0.64 -33.46 3.70 -716.68 -2.65 -36.11 16 16 C -0.23 -13.17 10.70 84.03 0.90 -12.27 16 17 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 19 N -0.96 -59.32 11.39 21.65 0.25 -59.08 16 20 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 C 0.13 5.22 8.42 86.49 0.73 5.95 16 25 C 0.04 1.33 4.47 86.38 0.39 1.71 16 26 C 0.09 2.33 6.17 86.35 0.53 2.86 16 27 N -0.18 -4.33 7.32 -48.50 -0.35 -4.68 16 28 N -0.32 -7.29 10.40 -170.01 -1.77 -9.06 16 29 H 0.07 0.76 8.11 -2.39 -0.02 0.74 16 30 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.79 8.11 -2.38 -0.02 0.77 16 32 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.19 2.37 7.78 -2.91 -0.02 2.35 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.10 2.28 7.06 -2.38 -0.02 2.26 16 36 H 0.11 2.48 8.04 -2.39 -0.02 2.46 16 37 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.11 3.87 8.04 -2.39 -0.02 3.85 16 39 H 0.02 0.87 5.65 -2.39 -0.01 0.86 16 40 H 0.03 1.68 7.17 -2.39 -0.02 1.67 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.05 1.91 6.22 -2.39 -0.01 1.90 16 44 H 0.02 0.61 6.45 -2.39 -0.02 0.59 16 45 H 0.09 2.78 6.06 -2.39 -0.01 2.76 16 46 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.14 3.75 3.88 -120.22 -0.47 3.28 16 Total: -1.00 -74.61 375.79 -1.52 -76.13 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.55 Total: 13.63 kcal Atomic # 6 Polarization: 22.67 SS G_CDS: 8.06 Total: 30.73 kcal Atomic # 7 Polarization: -135.55 SS G_CDS: -11.17 Total: -146.72 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.99 Total: -22.32 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -74.61 -1.52 -76.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941630587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.263 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds