Wall clock time and date at job start Wed Apr 1 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28394 * 119.09835 * 2 1 4 4 C 1.31399 * 122.26471 * 179.97438 * 3 2 1 5 5 C 1.47883 * 119.89581 * 179.97438 * 4 3 2 6 6 O 1.21553 * 120.00221 * 153.28217 * 5 4 3 7 7 N 1.34777 * 119.99847 * 333.28867 * 5 4 3 8 8 C 1.47077 * 120.88371 * 181.64045 * 7 5 4 9 9 C 1.53702 * 108.27789 * 128.74905 * 8 7 5 10 10 N 1.46899 * 109.25215 * 54.08575 * 9 8 7 11 11 C 1.46905 * 110.99757 * 172.60730 * 10 9 8 12 12 C 1.53945 * 113.74392 * 38.03996 * 11 10 9 13 13 N 1.47808 * 86.03610 * 222.08696 * 12 11 10 14 14 C 1.36943 * 134.45169 * 204.64433 * 13 12 11 15 15 H 1.07998 * 119.99740 * 179.86714 * 14 13 12 16 16 C 1.38805 * 120.00013 * 359.86743 * 14 13 12 17 17 N 1.31612 * 120.00509 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46685 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46858 * 119.99933 * 18 16 14 21 21 H 1.48499 * 109.47283 * 240.00054 * 18 16 14 22 22 C 1.47579 * 91.05659 * 24.55044 * 13 12 11 23 23 C 1.46892 * 111.26976 * 296.75501 * 10 9 8 24 24 C 1.47079 * 120.88074 * 1.91532 * 7 5 4 25 25 C 1.41583 * 120.21350 * 359.97438 * 4 3 2 26 26 C 1.36323 * 118.23680 * 0.02562 * 25 4 3 27 27 C 1.34608 * 119.10542 * 180.25626 * 2 1 3 28 28 O 1.21979 * 120.22022 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47703 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46846 * 120.00662 * 1 2 3 31 31 H 1.08991 * 109.47797 * 240.00450 * 1 2 3 32 32 H 1.09000 * 109.63160 * 248.51958 * 8 7 5 33 33 H 1.09001 * 109.62941 * 9.10467 * 8 7 5 34 34 H 1.08996 * 109.64695 * 294.08303 * 9 8 7 35 35 H 1.09001 * 109.41854 * 173.94909 * 9 8 7 36 36 H 1.08998 * 112.94702 * 169.63814 * 11 10 9 37 37 H 1.09002 * 113.76677 * 336.34942 * 12 11 10 38 38 H 1.09000 * 113.76648 * 107.74176 * 12 11 10 39 39 H 0.97004 * 120.00639 * 179.97438 * 17 16 14 40 40 H 1.08998 * 113.76832 * 221.15618 * 22 13 12 41 41 H 1.09000 * 113.87006 * 89.76298 * 22 13 12 42 42 H 1.09006 * 109.49492 * 303.14479 * 23 10 9 43 43 H 1.09000 * 109.49208 * 183.06725 * 23 10 9 44 44 H 1.08998 * 109.62801 * 350.89664 * 24 7 5 45 45 H 1.09003 * 109.62925 * 111.48309 * 24 7 5 46 46 H 1.08007 * 120.87952 * 179.97438 * 25 4 3 47 47 H 1.07998 * 121.03395 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0893 1.1219 0.0000 4 6 3.4013 1.1945 0.0005 5 6 4.0665 2.5153 -0.0001 6 8 5.1794 2.6355 0.4736 7 7 3.4385 3.5857 -0.5257 8 6 4.0960 4.9007 -0.5689 9 6 4.0028 5.4392 -2.0055 10 7 2.5980 5.4334 -2.4348 11 6 2.4417 6.1018 -3.7336 12 6 3.5942 5.8248 -4.7160 13 7 3.5153 7.2616 -5.0535 14 6 3.8574 8.0097 -6.1483 15 1 3.6912 9.0768 -6.1465 16 6 4.4177 7.3965 -7.2604 17 7 4.6208 6.0961 -7.2625 18 14 4.8837 8.4169 -8.7541 19 1 4.5568 9.8431 -8.5007 20 1 6.3400 8.2815 -9.0113 21 1 4.1254 7.9373 -9.9374 22 6 2.9181 7.5657 -3.7387 23 6 2.0594 4.0674 -2.4775 24 6 2.0753 3.4713 -1.0659 25 6 4.1803 0.0122 0.0016 26 6 3.5323 -1.1872 0.0016 27 6 2.1197 -1.1761 -0.0053 28 8 1.4974 -2.2252 -0.0104 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 -0.3634 -0.5137 0.8899 32 1 3.5929 5.5843 0.1150 33 1 5.1426 4.7964 -0.2829 34 1 4.5896 4.8076 -2.6724 35 1 4.3884 6.4583 -2.0362 36 1 1.4518 5.9610 -4.1676 37 1 4.5266 5.5383 -4.2296 38 1 3.3211 5.1634 -5.5382 39 1 5.0120 5.6675 -8.0398 40 1 2.1063 8.2918 -3.7823 41 1 3.6501 7.7921 -2.9634 42 1 2.6733 3.4549 -3.1380 43 1 1.0356 4.0916 -2.8506 44 1 1.7854 2.4214 -1.1086 45 1 1.3817 4.0201 -0.4289 46 1 5.2593 0.0593 0.0016 47 1 4.0817 -2.1169 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941658140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:57 Heat of formation + Delta-G solvation = 101.879092 kcal Electronic energy + Delta-G solvation = -31028.485224 eV Core-core repulsion = 26830.515910 eV Total energy + Delta-G solvation = -4197.969315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.59368 -40.36608 -39.00425 -38.08231 -36.77060 -35.31930 -33.92696 -32.24359 -31.84225 -30.96712 -28.95869 -28.06160 -26.50529 -25.43476 -24.88188 -24.39677 -23.56026 -22.79928 -21.75886 -20.19325 -19.07366 -18.43521 -17.86277 -17.38776 -17.12051 -16.82975 -16.42923 -16.00403 -15.56306 -15.41074 -14.99681 -14.81223 -14.62826 -14.28741 -14.03635 -13.84064 -13.78034 -13.64892 -13.41448 -13.12036 -12.91352 -12.60723 -12.32500 -12.05803 -11.88160 -11.78385 -11.54607 -11.22892 -10.99619 -10.89464 -10.88524 -10.71473 -10.63816 -10.49029 -10.20476 -10.02656 -9.84283 -9.52961 -9.02680 -8.86866 -8.77237 -7.87686 -6.88836 -5.80123 -3.12721 -0.02357 0.75952 1.64267 2.41967 2.64420 3.06046 3.36190 3.41591 3.44237 3.47812 4.08556 4.11778 4.23546 4.33861 4.46495 4.73071 4.75847 4.88432 4.98724 5.07965 5.09852 5.15500 5.17691 5.26781 5.30052 5.36572 5.43077 5.47149 5.49331 5.61127 5.64365 5.78690 5.84066 5.90624 6.02628 6.14593 6.30938 6.32486 6.52406 6.60040 6.94360 7.06250 7.14955 7.16968 7.33419 7.47497 7.48955 7.57766 7.81911 7.94420 9.00815 9.67555 10.55813 11.36619 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002381 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.060497 B =11754.735446 C =12032.192956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.343 5.343 3 N -0.175 5.175 4 C 0.023 3.977 5 C 0.587 3.413 6 O -0.529 6.529 7 N -0.589 5.589 8 C 0.117 3.883 9 C 0.037 3.963 10 N -0.529 5.529 11 C 0.034 3.966 12 C 0.132 3.868 13 N -0.609 5.609 14 C -0.220 4.220 15 H 0.081 0.919 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.126 3.874 23 C 0.039 3.961 24 C 0.099 3.901 25 C -0.031 4.031 26 C -0.189 4.189 27 C 0.480 3.520 28 O -0.525 6.525 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.252 0.748 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -11.665 17.576 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.165 5.165 3 N -0.006 5.006 4 C -0.147 4.147 5 C 0.371 3.629 6 O -0.404 6.404 7 N -0.321 5.321 8 C -0.005 4.005 9 C -0.092 4.092 10 N -0.253 5.253 11 C -0.074 4.074 12 C 0.005 3.995 13 N -0.336 5.336 14 C -0.348 4.348 15 H 0.099 0.901 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.000 4.000 23 C -0.090 4.090 24 C -0.024 4.024 25 C -0.054 4.054 26 C -0.219 4.219 27 C 0.278 3.722 28 O -0.402 6.402 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.099 0.901 46 H 0.181 0.819 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.964 -11.392 17.854 22.627 hybrid contribution 1.404 -0.471 -1.598 2.178 sum -6.560 -11.863 16.257 21.167 Atomic orbital electron populations 1.22277 0.73260 1.05590 1.04924 1.46937 1.10032 1.02741 1.56778 1.71341 1.11018 1.11535 1.06707 1.21784 0.88282 0.96353 1.08329 1.17253 0.84805 0.81925 0.78893 1.90832 1.18781 1.83983 1.46847 1.48059 1.16866 1.08960 1.58208 1.22016 0.99071 0.81800 0.97565 1.22690 0.89951 1.02377 0.94167 1.62053 1.17520 1.15830 1.29902 1.24299 1.00320 0.95907 0.86891 1.22941 0.93574 0.88451 0.94500 1.45829 1.72866 1.04164 1.10753 1.19057 1.34518 0.90815 0.90439 0.90121 1.24785 1.01361 0.95999 0.98362 1.69827 1.49326 1.08036 1.29699 0.86052 0.77875 0.79131 0.82747 1.20411 1.21758 1.21710 1.22653 0.95101 0.93821 0.88425 1.22458 1.00953 0.89964 0.95629 1.22580 0.82251 1.03117 0.94487 1.22207 1.03006 0.90222 0.89999 1.22703 0.92689 1.00470 1.05992 1.18089 0.90108 0.83913 0.80045 1.90988 1.69285 1.29404 1.50570 0.87724 0.89055 0.89210 0.90276 0.88598 0.93276 0.88750 0.88301 0.95150 0.91370 0.93757 0.93656 0.94515 0.94330 0.89621 0.87249 0.90056 0.81947 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.20 59.84 0.61 1.05 16 2 N -0.34 -3.00 3.62 -70.16 -0.25 -3.25 16 3 N -0.18 -1.59 7.10 33.42 0.24 -1.35 16 4 C 0.02 0.23 6.45 -82.83 -0.53 -0.30 16 5 C 0.59 7.11 7.59 -12.31 -0.09 7.02 16 6 O -0.53 -7.72 16.14 5.32 0.09 -7.63 16 7 N -0.59 -6.80 3.00 -173.28 -0.52 -7.32 16 8 C 0.12 1.40 6.62 -3.36 -0.02 1.37 16 9 C 0.04 0.52 4.49 -3.46 -0.02 0.50 16 10 N -0.53 -7.50 4.76 -227.94 -1.08 -8.59 16 11 C 0.03 0.61 4.03 -69.92 -0.28 0.33 16 12 C 0.13 2.99 6.81 -2.84 -0.02 2.97 16 13 N -0.61 -15.28 3.70 -177.89 -0.66 -15.94 16 14 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.24 5.50 -17.44 -0.10 -0.34 16 17 N -0.92 -27.16 11.39 55.49 0.63 -26.53 16 18 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.13 2.49 8.42 -2.96 -0.02 2.46 16 23 C 0.04 0.47 5.61 -3.70 -0.02 0.45 16 24 C 0.10 0.98 6.12 -3.60 -0.02 0.96 16 25 C -0.03 -0.27 9.68 -39.00 -0.38 -0.64 16 26 C -0.19 -1.60 10.11 -39.12 -0.40 -1.99 16 27 C 0.48 5.00 7.47 -15.19 -0.11 4.88 16 28 O -0.52 -6.88 17.07 4.94 0.08 -6.80 16 29 H 0.10 0.36 8.05 -51.93 -0.42 -0.06 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.18 7.07 -51.93 -0.37 0.81 16 34 H 0.05 0.80 6.45 -51.93 -0.33 0.47 16 35 H 0.09 1.41 6.06 -51.93 -0.31 1.09 16 36 H 0.10 1.74 8.04 -51.93 -0.42 1.32 16 37 H 0.03 0.71 5.65 -51.93 -0.29 0.42 16 38 H 0.07 1.75 7.17 -51.93 -0.37 1.38 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.70 6.22 -51.93 -0.32 0.38 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.92 8.04 -51.93 -0.42 0.51 16 44 H 0.11 0.99 4.28 -77.51 -0.33 0.66 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.16 1.16 7.93 -52.48 -0.42 0.74 16 47 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -34.48 375.47 -8.92 -43.41 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.51 Total: -1.08 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -1.57 Total: 12.43 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -1.65 Total: -62.99 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.17 Total: -14.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.48 -8.92 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941658140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.286 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds