Wall clock time and date at job start Wed Apr 1 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28394 * 119.09835 * 2 1 4 4 C 1.31399 * 122.26471 * 179.97438 * 3 2 1 5 5 C 1.47883 * 119.89581 * 179.97438 * 4 3 2 6 6 O 1.21553 * 120.00221 * 153.28217 * 5 4 3 7 7 N 1.34777 * 119.99847 * 333.28867 * 5 4 3 8 8 C 1.47077 * 120.88371 * 181.64045 * 7 5 4 9 9 C 1.53702 * 108.27789 * 128.74905 * 8 7 5 10 10 N 1.46899 * 109.25215 * 54.08575 * 9 8 7 11 11 C 1.46905 * 110.99757 * 172.60730 * 10 9 8 12 12 C 1.53945 * 113.74392 * 38.03996 * 11 10 9 13 13 N 1.47808 * 86.03610 * 222.08696 * 12 11 10 14 14 C 1.36943 * 134.45169 * 204.64433 * 13 12 11 15 15 H 1.07998 * 119.99740 * 179.86714 * 14 13 12 16 16 C 1.38805 * 120.00013 * 359.86743 * 14 13 12 17 17 N 1.31612 * 120.00509 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46685 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46858 * 119.99933 * 18 16 14 21 21 H 1.48499 * 109.47283 * 240.00054 * 18 16 14 22 22 C 1.47579 * 91.05659 * 24.55044 * 13 12 11 23 23 C 1.46892 * 111.26976 * 296.75501 * 10 9 8 24 24 C 1.47079 * 120.88074 * 1.91532 * 7 5 4 25 25 C 1.41583 * 120.21350 * 359.97438 * 4 3 2 26 26 C 1.36323 * 118.23680 * 0.02562 * 25 4 3 27 27 C 1.34608 * 119.10542 * 180.25626 * 2 1 3 28 28 O 1.21979 * 120.22022 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47703 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46846 * 120.00662 * 1 2 3 31 31 H 1.08991 * 109.47797 * 240.00450 * 1 2 3 32 32 H 1.09000 * 109.63160 * 248.51958 * 8 7 5 33 33 H 1.09001 * 109.62941 * 9.10467 * 8 7 5 34 34 H 1.08996 * 109.64695 * 294.08303 * 9 8 7 35 35 H 1.09001 * 109.41854 * 173.94909 * 9 8 7 36 36 H 1.08998 * 112.94702 * 169.63814 * 11 10 9 37 37 H 1.09002 * 113.76677 * 336.34942 * 12 11 10 38 38 H 1.09000 * 113.76648 * 107.74176 * 12 11 10 39 39 H 0.97004 * 120.00639 * 179.97438 * 17 16 14 40 40 H 1.08998 * 113.76832 * 221.15618 * 22 13 12 41 41 H 1.09000 * 113.87006 * 89.76298 * 22 13 12 42 42 H 1.09006 * 109.49492 * 303.14479 * 23 10 9 43 43 H 1.09000 * 109.49208 * 183.06725 * 23 10 9 44 44 H 1.08998 * 109.62801 * 350.89664 * 24 7 5 45 45 H 1.09003 * 109.62925 * 111.48309 * 24 7 5 46 46 H 1.08007 * 120.87952 * 179.97438 * 25 4 3 47 47 H 1.07998 * 121.03395 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0893 1.1219 0.0000 4 6 3.4013 1.1945 0.0005 5 6 4.0665 2.5153 -0.0001 6 8 5.1794 2.6355 0.4736 7 7 3.4385 3.5857 -0.5257 8 6 4.0960 4.9007 -0.5689 9 6 4.0028 5.4392 -2.0055 10 7 2.5980 5.4334 -2.4348 11 6 2.4417 6.1018 -3.7336 12 6 3.5942 5.8248 -4.7160 13 7 3.5153 7.2616 -5.0535 14 6 3.8574 8.0097 -6.1483 15 1 3.6912 9.0768 -6.1465 16 6 4.4177 7.3965 -7.2604 17 7 4.6208 6.0961 -7.2625 18 14 4.8837 8.4169 -8.7541 19 1 4.5568 9.8431 -8.5007 20 1 6.3400 8.2815 -9.0113 21 1 4.1254 7.9373 -9.9374 22 6 2.9181 7.5657 -3.7387 23 6 2.0594 4.0674 -2.4775 24 6 2.0753 3.4713 -1.0659 25 6 4.1803 0.0122 0.0016 26 6 3.5323 -1.1872 0.0016 27 6 2.1197 -1.1761 -0.0053 28 8 1.4974 -2.2252 -0.0104 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8900 31 1 -0.3634 -0.5137 0.8899 32 1 3.5929 5.5843 0.1150 33 1 5.1426 4.7964 -0.2829 34 1 4.5896 4.8076 -2.6724 35 1 4.3884 6.4583 -2.0362 36 1 1.4518 5.9610 -4.1676 37 1 4.5266 5.5383 -4.2296 38 1 3.3211 5.1634 -5.5382 39 1 5.0120 5.6675 -8.0398 40 1 2.1063 8.2918 -3.7823 41 1 3.6501 7.7921 -2.9634 42 1 2.6733 3.4549 -3.1380 43 1 1.0356 4.0916 -2.8506 44 1 1.7854 2.4214 -1.1086 45 1 1.3817 4.0201 -0.4289 46 1 5.2593 0.0593 0.0016 47 1 4.0817 -2.1169 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941658140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:55 Heat of formation + Delta-G solvation = 76.710923 kcal Electronic energy + Delta-G solvation = -31029.576598 eV Core-core repulsion = 26830.515910 eV Total energy + Delta-G solvation = -4199.060688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.33835 -41.41751 -40.34200 -38.93877 -38.03567 -36.01272 -35.27677 -33.83262 -32.98172 -31.92361 -29.94596 -29.31882 -27.86318 -26.61547 -26.31204 -25.22493 -24.47103 -24.39873 -22.90932 -21.30032 -20.18227 -19.52008 -18.73915 -18.72031 -18.15790 -17.88251 -17.41893 -16.97135 -16.84461 -16.73839 -16.40467 -16.12771 -15.60741 -15.59658 -15.24085 -14.92450 -14.59268 -14.47536 -14.43354 -14.00147 -13.81684 -13.63431 -13.50474 -13.43789 -13.25580 -13.17013 -12.90247 -12.81429 -12.57494 -12.17936 -12.15376 -11.99552 -11.87498 -11.76601 -11.52679 -11.42337 -11.37195 -10.88652 -10.75582 -9.91445 -9.69395 -9.24147 -8.85709 -7.91706 -5.25396 -0.73455 -0.03799 0.96942 1.44177 1.44908 1.53294 1.55349 1.76857 2.28018 2.44206 2.67361 2.91522 3.28799 3.33721 3.50182 3.52603 3.66630 3.84873 3.91444 4.02253 4.13479 4.27890 4.32652 4.35816 4.40948 4.44680 4.50395 4.51810 4.58083 4.68013 4.72756 4.76450 4.79353 4.85956 4.90041 4.96229 4.98668 5.00862 5.13900 5.22910 5.33232 5.43143 5.49109 5.90391 6.03385 6.14955 6.24457 6.31689 6.70891 6.89882 6.90133 7.59678 8.54913 9.24478 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002381 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.060497 B =11754.735446 C =12032.192956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.337 5.337 3 N -0.165 5.165 4 C 0.011 3.989 5 C 0.587 3.413 6 O -0.558 6.558 7 N -0.592 5.592 8 C 0.126 3.874 9 C 0.042 3.958 10 N -0.514 5.514 11 C 0.067 3.933 12 C 0.132 3.868 13 N -0.641 5.641 14 C -0.229 4.229 15 H 0.086 0.914 16 C -0.070 4.070 17 N -0.955 5.955 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.295 1.295 21 H -0.292 1.292 22 C 0.128 3.872 23 C 0.037 3.963 24 C 0.108 3.892 25 C -0.029 4.029 26 C -0.187 4.187 27 C 0.470 3.530 28 O -0.558 6.558 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.021 0.979 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.018 0.982 38 H 0.030 0.970 39 H 0.246 0.754 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.017 0.983 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.103 0.897 46 H 0.175 0.825 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 -11.129 18.968 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.159 5.159 3 N 0.004 4.996 4 C -0.159 4.159 5 C 0.373 3.627 6 O -0.435 6.435 7 N -0.324 5.324 8 C 0.004 3.996 9 C -0.087 4.087 10 N -0.237 5.237 11 C -0.042 4.042 12 C 0.005 3.995 13 N -0.368 5.368 14 C -0.358 4.358 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.605 5.605 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.222 1.222 21 H -0.219 1.219 22 C 0.003 3.997 23 C -0.092 4.092 24 C -0.014 4.014 25 C -0.052 4.052 26 C -0.216 4.216 27 C 0.271 3.729 28 O -0.439 6.439 29 H 0.148 0.852 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.124 0.876 44 H 0.139 0.861 45 H 0.121 0.879 46 H 0.193 0.807 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.503 -10.822 19.286 24.070 hybrid contribution 1.831 -0.629 -1.972 2.763 sum -7.672 -11.450 17.315 22.131 Atomic orbital electron populations 1.22606 0.71320 1.07463 1.05532 1.47167 1.11201 1.02207 1.55290 1.71297 1.10581 1.11475 1.06264 1.21607 0.88902 0.95857 1.09497 1.17451 0.84444 0.82484 0.78341 1.90815 1.20043 1.84510 1.48156 1.48163 1.17430 1.08749 1.58021 1.21899 0.99341 0.82375 0.95956 1.22606 0.89366 1.01511 0.95216 1.62101 1.17458 1.17195 1.26986 1.23837 0.98466 0.94765 0.87146 1.22861 0.95166 0.86941 0.94545 1.46232 1.73120 1.05259 1.12178 1.19463 1.33391 0.91418 0.91492 0.89654 1.25628 1.02208 0.97090 1.01337 1.70027 1.50697 1.09621 1.30127 0.85015 0.76893 0.78426 0.79051 1.18708 1.22229 1.21885 1.22807 0.95342 0.95331 0.86203 1.22612 1.01446 0.88159 0.96989 1.22650 0.81726 1.03943 0.93125 1.22300 1.03602 0.89650 0.89615 1.22879 0.92029 1.01262 1.05442 1.18401 0.90810 0.83918 0.79822 1.90972 1.69996 1.30454 1.52444 0.85227 0.88612 0.88504 0.88229 0.89114 0.96112 0.89480 0.87463 0.96402 0.95201 0.94494 0.92241 0.93177 0.96410 0.87559 0.86119 0.87883 0.80711 0.79372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.20 127.77 1.30 1.90 16 2 N -0.34 -5.24 3.62 -494.08 -1.79 -7.03 16 3 N -0.16 -2.62 7.10 -48.19 -0.34 -2.96 16 4 C 0.01 0.20 6.45 42.59 0.27 0.48 16 5 C 0.59 13.49 7.59 86.80 0.66 14.15 16 6 O -0.56 -15.91 16.14 -3.88 -0.06 -15.97 16 7 N -0.59 -12.63 3.00 -820.40 -2.46 -15.09 16 8 C 0.13 2.82 6.62 86.51 0.57 3.39 16 9 C 0.04 1.16 4.49 86.54 0.39 1.54 16 10 N -0.51 -13.71 4.76 -875.06 -4.16 -17.87 16 11 C 0.07 2.32 4.03 46.67 0.19 2.51 16 12 C 0.13 6.14 6.81 86.44 0.59 6.73 16 13 N -0.64 -32.36 3.70 -716.71 -2.65 -35.01 16 14 C -0.23 -12.79 10.70 84.03 0.90 -11.89 16 15 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 16 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 17 N -0.96 -58.12 11.39 21.65 0.25 -57.88 16 18 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 C 0.13 4.88 8.42 86.49 0.73 5.61 16 23 C 0.04 0.81 5.61 86.39 0.48 1.29 16 24 C 0.11 1.84 6.12 86.35 0.53 2.37 16 25 C -0.03 -0.45 9.68 22.65 0.22 -0.23 16 26 C -0.19 -2.91 10.11 22.57 0.23 -2.68 16 27 C 0.47 9.21 7.47 85.01 0.63 9.85 16 28 O -0.56 -14.23 17.07 -5.25 -0.09 -14.32 16 29 H 0.13 0.45 8.05 -2.39 -0.02 0.43 16 30 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.16 7.07 -2.39 -0.02 2.15 16 34 H 0.02 0.70 6.45 -2.39 -0.02 0.68 16 35 H 0.09 2.54 6.06 -2.39 -0.01 2.53 16 36 H 0.11 3.58 8.04 -2.39 -0.02 3.56 16 37 H 0.02 0.89 5.65 -2.39 -0.01 0.87 16 38 H 0.03 1.60 7.17 -2.39 -0.02 1.58 16 39 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.81 6.22 -2.39 -0.01 1.80 16 42 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.11 1.97 8.04 -2.39 -0.02 1.95 16 44 H 0.12 1.84 4.28 -35.48 -0.15 1.69 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.18 2.29 7.93 -2.91 -0.02 2.26 16 47 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -76.26 375.47 -0.26 -76.52 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.86 Total: 10.27 kcal Atomic # 6 Polarization: 23.31 SS G_CDS: 8.17 Total: 31.47 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -11.16 Total: -135.84 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.15 Total: -30.29 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.26 -0.26 -76.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941658140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.232 kcal (2) G-P(sol) polarization free energy of solvation -76.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds