Wall clock time and date at job start Wed Apr 1 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 119.99958 * 2 1 4 4 O 1.21490 * 120.00408 * 185.46713 * 3 2 1 5 5 C 1.48309 * 120.00039 * 5.46141 * 3 2 1 6 6 N 1.32893 * 120.13979 * 76.63755 * 5 3 2 7 7 C 1.31843 * 119.99499 * 180.02562 * 6 5 3 8 8 C 1.39001 * 120.28866 * 0.02562 * 7 6 5 9 9 N 1.31835 * 120.29263 * 359.97438 * 8 7 6 10 10 C 1.32884 * 120.00020 * 0.02562 * 9 8 7 11 11 C 1.48304 * 120.14820 * 180.27553 * 10 9 8 12 12 N 1.34777 * 119.99786 * 354.57886 * 11 10 9 13 13 O 1.21492 * 120.00514 * 174.58186 * 11 10 9 14 14 C 1.46497 * 120.00011 * 180.02562 * 2 1 3 15 15 C 1.53005 * 109.47050 * 350.42166 * 14 2 1 16 16 C 1.53000 * 109.47160 * 300.00035 * 15 14 2 17 17 C 1.53003 * 109.47527 * 300.00291 * 16 15 14 18 18 N 1.46495 * 109.47359 * 179.97438 * 17 16 15 19 19 C 1.36937 * 119.99868 * 85.00191 * 18 17 16 20 20 H 1.08004 * 119.99825 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00206 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99861 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00275 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47008 * 59.99442 * 23 21 19 25 25 H 1.48497 * 109.47337 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47115 * 299.99680 * 23 21 19 27 27 C 1.53008 * 109.46789 * 59.99640 * 17 16 15 28 28 C 1.53000 * 109.47162 * 299.99938 * 27 17 16 29 29 H 1.08997 * 109.47460 * 35.78886 * 1 2 3 30 30 H 1.09005 * 109.47380 * 155.79147 * 1 2 3 31 31 H 1.09005 * 109.47174 * 275.78829 * 1 2 3 32 32 H 1.08003 * 119.85260 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.85045 * 179.97438 * 8 7 6 34 34 H 0.97000 * 120.00081 * 0.02562 * 12 11 10 35 35 H 0.97003 * 120.00364 * 179.97438 * 12 11 10 36 36 H 1.09001 * 109.47398 * 110.42360 * 14 2 1 37 37 H 1.08994 * 109.47440 * 60.00422 * 15 14 2 38 38 H 1.09004 * 109.46844 * 180.02562 * 15 14 2 39 39 H 1.08996 * 109.47387 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.46760 * 59.99912 * 16 15 14 41 41 H 1.09000 * 109.46799 * 300.00351 * 17 16 15 42 42 H 0.97001 * 119.99965 * 265.00019 * 18 17 16 43 43 H 0.96996 * 119.99657 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.46648 * 180.02562 * 27 17 16 45 45 H 1.08991 * 109.46921 * 60.00518 * 27 17 16 46 46 H 1.09004 * 109.47287 * 300.00571 * 28 27 17 47 47 H 1.08998 * 109.46744 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3496 1.1696 -0.1002 5 6 1.4024 2.4486 0.1222 6 7 0.9337 2.8389 1.3030 7 6 0.2789 3.9784 1.4083 8 6 0.0750 4.7758 0.2882 9 7 0.5350 4.3997 -0.8886 10 6 1.1965 3.2534 -1.0080 11 6 1.7208 2.8301 -2.3291 12 7 1.4338 3.5517 -3.4306 13 8 2.4088 1.8327 -2.4185 14 6 2.1975 -1.2687 -0.0006 15 6 1.2206 -2.4217 0.2390 16 6 0.5297 -2.2323 1.5909 17 6 1.5806 -2.2148 2.7028 18 7 0.9191 -2.0329 3.9971 19 6 0.4177 -3.1162 4.6681 20 1 0.5095 -4.1047 4.2428 21 6 -0.2096 -2.9438 5.8943 22 7 -0.3220 -1.7390 6.4123 23 14 -0.8943 -4.4215 6.8092 24 1 0.2050 -5.3767 7.0996 25 1 -1.5095 -3.9729 8.0841 26 1 -1.9222 -5.0898 5.9713 27 6 2.5575 -1.0618 2.4632 28 6 3.2484 -1.2513 1.1113 29 1 -0.3634 0.8336 -0.6009 30 1 -0.3634 -0.9373 -0.4214 31 1 -0.3634 0.1036 1.0225 32 1 -0.1014 4.2931 2.3689 33 1 -0.4627 5.7078 0.3825 34 1 0.8848 4.3482 -3.3593 35 1 1.7770 3.2751 -4.2947 36 1 2.6898 -1.4037 -0.9637 37 1 0.4720 -2.4342 -0.5531 38 1 1.7658 -3.3656 0.2390 39 1 -0.1658 -3.0539 1.7617 40 1 -0.0153 -1.2883 1.5912 41 1 2.1256 -3.1588 2.7023 42 1 0.8363 -1.1450 4.3789 43 1 -0.7607 -1.6185 7.2690 44 1 3.3064 -1.0497 3.2551 45 1 2.0124 -0.1179 2.4636 46 1 3.7934 -2.1954 1.1110 47 1 3.9439 -0.4297 0.9405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964343561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:29 Heat of formation + Delta-G solvation = 12.227417 kcal Electronic energy + Delta-G solvation = -32077.406977 eV Core-core repulsion = 27875.550075 eV Total energy + Delta-G solvation = -4201.856903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.90461 -40.15735 -39.35785 -37.64506 -35.11916 -34.96381 -33.78575 -33.25422 -32.08642 -30.82518 -30.52824 -28.04310 -26.53474 -26.01082 -25.46741 -23.57656 -22.05337 -21.80478 -21.61098 -20.10821 -18.98983 -18.56944 -18.44248 -17.44293 -16.99852 -16.72347 -16.22360 -15.85304 -15.51934 -15.41262 -15.21420 -14.81124 -14.35979 -14.14523 -13.93950 -13.81184 -13.48282 -13.39817 -13.02799 -12.72960 -12.37601 -12.19179 -12.02249 -11.91345 -11.72552 -11.63116 -11.43299 -10.97371 -10.81610 -10.79925 -10.51672 -10.33286 -10.14494 -10.07198 -10.06319 -9.96603 -9.85416 -9.54931 -9.48185 -9.14712 -8.80407 -8.38163 -6.86104 -5.69444 -2.97018 -0.14914 0.48227 2.31954 2.54812 2.75829 2.92141 3.28183 3.46960 3.51471 3.52283 3.53951 3.86585 3.98162 4.34064 4.64422 4.64658 4.68123 4.82573 5.03222 5.13286 5.18549 5.34577 5.43828 5.61134 5.67412 5.71429 5.76084 5.79883 5.93666 6.03758 6.12838 6.18109 6.18470 6.34398 6.45627 6.55004 6.58108 6.61582 6.73854 6.81681 6.86203 6.91242 7.11554 7.16874 7.26797 7.45418 7.75818 7.80851 8.21685 8.49757 9.60311 10.21266 10.56175 11.53330 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003153 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.538179 B = 8877.714040 C = 9910.434195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.585 5.585 3 C 0.594 3.406 4 O -0.502 6.502 5 C 0.112 3.888 6 N -0.403 5.403 7 C 0.085 3.915 8 C 0.057 3.943 9 N -0.412 5.412 10 C 0.047 3.953 11 C 0.573 3.427 12 N -0.834 5.834 13 O -0.498 6.498 14 C 0.159 3.841 15 C -0.125 4.125 16 C -0.151 4.151 17 C 0.181 3.819 18 N -0.724 5.724 19 C -0.233 4.233 20 H 0.068 0.932 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.118 4.118 28 C -0.137 4.137 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.410 0.590 35 H 0.408 0.592 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 14.525 -19.801 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.318 5.318 3 C 0.377 3.623 4 O -0.375 6.375 5 C -0.031 4.031 6 N -0.118 5.118 7 C -0.077 4.077 8 C -0.106 4.106 9 N -0.129 5.129 10 C -0.094 4.094 11 C 0.354 3.646 12 N -0.399 5.399 13 O -0.371 6.371 14 C 0.057 3.943 15 C -0.164 4.164 16 C -0.191 4.191 17 C 0.071 3.929 18 N -0.364 5.364 19 C -0.365 4.365 20 H 0.086 0.914 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.156 4.156 28 C -0.176 4.176 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.204 0.796 33 H 0.201 0.799 34 H 0.240 0.760 35 H 0.240 0.760 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.047 13.582 -19.683 23.914 hybrid contribution -0.933 0.069 0.515 1.068 sum -0.886 13.651 -19.167 23.548 Atomic orbital electron populations 1.22068 0.80033 1.02618 1.02273 1.47500 1.06610 1.05171 1.72489 1.17152 0.86520 0.81799 0.76815 1.90733 1.12740 1.85650 1.48384 1.22326 0.94090 0.97184 0.89463 1.68757 1.05395 1.14628 1.23061 1.24343 0.92635 0.89530 1.01214 1.24064 0.97204 1.01047 0.88320 1.68328 1.05520 1.12306 1.26730 1.22031 0.99083 0.93046 0.95262 1.17647 0.80198 0.83457 0.83339 1.43536 1.55853 1.31016 1.09473 1.90976 1.36300 1.24799 1.85002 1.21088 0.92722 0.81578 0.98918 1.21917 0.98247 0.97285 0.98928 1.22653 1.00168 1.02665 0.93602 1.20186 0.91063 0.95677 0.85993 1.42434 1.68210 1.07643 1.18161 1.19207 1.29140 0.88106 1.00019 0.91398 1.24713 1.02027 0.96372 0.98014 1.69660 1.49134 1.19946 1.19537 0.86309 0.78793 0.82150 0.79190 1.21391 1.21804 1.21420 1.21710 0.98677 0.99628 0.95620 1.21985 0.98063 1.03167 0.94359 0.93600 0.89367 0.90803 0.79571 0.79852 0.76019 0.76009 0.91086 0.92122 0.90533 0.92101 0.91128 0.93955 0.78362 0.93631 0.92272 0.92352 0.91290 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 8.08 59.85 0.48 1.44 16 2 N -0.58 -8.94 2.33 -174.87 -0.41 -9.35 16 3 C 0.59 10.02 4.45 -12.12 -0.05 9.97 16 4 O -0.50 -9.89 13.78 -14.96 -0.21 -10.10 16 5 C 0.11 1.62 4.83 -82.50 -0.40 1.22 16 6 N -0.40 -5.40 10.44 -9.31 -0.10 -5.50 16 7 C 0.09 0.74 11.23 -17.26 -0.19 0.55 16 8 C 0.06 0.39 11.23 -17.27 -0.19 0.20 16 9 N -0.41 -3.77 9.73 -9.31 -0.09 -3.86 16 10 C 0.05 0.57 6.78 -82.51 -0.56 0.02 16 11 C 0.57 6.98 8.06 -12.12 -0.10 6.88 16 12 N -0.83 -6.13 8.86 30.63 0.27 -5.86 16 13 O -0.50 -7.98 14.55 -14.96 -0.22 -8.20 16 14 C 0.16 2.41 3.08 -67.93 -0.21 2.20 16 15 C -0.13 -1.77 4.90 -26.73 -0.13 -1.90 16 16 C -0.15 -2.65 5.03 -26.73 -0.13 -2.79 16 17 C 0.18 3.72 2.77 -67.93 -0.19 3.53 16 18 N -0.72 -18.55 5.12 -53.42 -0.27 -18.82 16 19 C -0.23 -6.54 9.93 -15.06 -0.15 -6.69 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 23 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 C -0.12 -2.24 5.22 -26.73 -0.14 -2.38 16 28 C -0.14 -2.28 5.09 -26.73 -0.14 -2.41 16 29 H 0.05 0.54 7.25 -51.93 -0.38 0.16 16 30 H 0.09 1.03 5.48 -51.93 -0.28 0.74 16 31 H 0.07 1.07 6.37 -51.93 -0.33 0.74 16 32 H 0.19 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.18 0.44 8.06 -52.48 -0.42 0.01 16 34 H 0.41 2.16 8.20 -40.82 -0.33 1.82 16 35 H 0.41 2.27 8.93 -40.82 -0.36 1.91 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.74 6.54 -51.93 -0.34 0.40 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.25 4.17 -51.93 -0.22 1.03 16 41 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.38 10.55 7.80 -40.82 -0.32 10.23 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.17 7.28 -51.93 -0.38 0.80 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 1.57 5.70 -51.93 -0.30 1.28 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -37.03 373.67 -8.05 -45.08 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.16 Total: 11.83 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.20 Total: 9.28 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: 0.13 Total: -71.12 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.42 Total: -18.30 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.03 -8.05 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964343561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.312 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds