Wall clock time and date at job start Wed Apr 1 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 119.99958 * 2 1 4 4 O 1.21490 * 120.00408 * 185.46713 * 3 2 1 5 5 C 1.48309 * 120.00039 * 5.46141 * 3 2 1 6 6 N 1.32893 * 120.13979 * 76.63755 * 5 3 2 7 7 C 1.31843 * 119.99499 * 180.02562 * 6 5 3 8 8 C 1.39001 * 120.28866 * 0.02562 * 7 6 5 9 9 N 1.31835 * 120.29263 * 359.97438 * 8 7 6 10 10 C 1.32884 * 120.00020 * 0.02562 * 9 8 7 11 11 C 1.48304 * 120.14820 * 180.27553 * 10 9 8 12 12 N 1.34777 * 119.99786 * 354.57886 * 11 10 9 13 13 O 1.21492 * 120.00514 * 174.58186 * 11 10 9 14 14 C 1.46497 * 120.00011 * 180.02562 * 2 1 3 15 15 C 1.53005 * 109.47050 * 350.42166 * 14 2 1 16 16 C 1.53000 * 109.47160 * 300.00035 * 15 14 2 17 17 C 1.53003 * 109.47527 * 300.00291 * 16 15 14 18 18 N 1.46495 * 109.47359 * 179.97438 * 17 16 15 19 19 C 1.36937 * 119.99868 * 85.00191 * 18 17 16 20 20 H 1.08004 * 119.99825 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00206 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99861 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00275 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47008 * 59.99442 * 23 21 19 25 25 H 1.48497 * 109.47337 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47115 * 299.99680 * 23 21 19 27 27 C 1.53008 * 109.46789 * 59.99640 * 17 16 15 28 28 C 1.53000 * 109.47162 * 299.99938 * 27 17 16 29 29 H 1.08997 * 109.47460 * 35.78886 * 1 2 3 30 30 H 1.09005 * 109.47380 * 155.79147 * 1 2 3 31 31 H 1.09005 * 109.47174 * 275.78829 * 1 2 3 32 32 H 1.08003 * 119.85260 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.85045 * 179.97438 * 8 7 6 34 34 H 0.97000 * 120.00081 * 0.02562 * 12 11 10 35 35 H 0.97003 * 120.00364 * 179.97438 * 12 11 10 36 36 H 1.09001 * 109.47398 * 110.42360 * 14 2 1 37 37 H 1.08994 * 109.47440 * 60.00422 * 15 14 2 38 38 H 1.09004 * 109.46844 * 180.02562 * 15 14 2 39 39 H 1.08996 * 109.47387 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.46760 * 59.99912 * 16 15 14 41 41 H 1.09000 * 109.46799 * 300.00351 * 17 16 15 42 42 H 0.97001 * 119.99965 * 265.00019 * 18 17 16 43 43 H 0.96996 * 119.99657 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.46648 * 180.02562 * 27 17 16 45 45 H 1.08991 * 109.46921 * 60.00518 * 27 17 16 46 46 H 1.09004 * 109.47287 * 300.00571 * 28 27 17 47 47 H 1.08998 * 109.46744 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3496 1.1696 -0.1002 5 6 1.4024 2.4486 0.1222 6 7 0.9337 2.8389 1.3030 7 6 0.2789 3.9784 1.4083 8 6 0.0750 4.7758 0.2882 9 7 0.5350 4.3997 -0.8886 10 6 1.1965 3.2534 -1.0080 11 6 1.7208 2.8301 -2.3291 12 7 1.4338 3.5517 -3.4306 13 8 2.4088 1.8327 -2.4185 14 6 2.1975 -1.2687 -0.0006 15 6 1.2206 -2.4217 0.2390 16 6 0.5297 -2.2323 1.5909 17 6 1.5806 -2.2148 2.7028 18 7 0.9191 -2.0329 3.9971 19 6 0.4177 -3.1162 4.6681 20 1 0.5095 -4.1047 4.2428 21 6 -0.2096 -2.9438 5.8943 22 7 -0.3220 -1.7390 6.4123 23 14 -0.8943 -4.4215 6.8092 24 1 0.2050 -5.3767 7.0996 25 1 -1.5095 -3.9729 8.0841 26 1 -1.9222 -5.0898 5.9713 27 6 2.5575 -1.0618 2.4632 28 6 3.2484 -1.2513 1.1113 29 1 -0.3634 0.8336 -0.6009 30 1 -0.3634 -0.9373 -0.4214 31 1 -0.3634 0.1036 1.0225 32 1 -0.1014 4.2931 2.3689 33 1 -0.4627 5.7078 0.3825 34 1 0.8848 4.3482 -3.3593 35 1 1.7770 3.2751 -4.2947 36 1 2.6898 -1.4037 -0.9637 37 1 0.4720 -2.4342 -0.5531 38 1 1.7658 -3.3656 0.2390 39 1 -0.1658 -3.0539 1.7617 40 1 -0.0153 -1.2883 1.5912 41 1 2.1256 -3.1588 2.7023 42 1 0.8363 -1.1450 4.3789 43 1 -0.7607 -1.6185 7.2690 44 1 3.3064 -1.0497 3.2551 45 1 2.0124 -0.1179 2.4636 46 1 3.7934 -2.1954 1.1110 47 1 3.9439 -0.4297 0.9405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964343561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:27 Heat of formation + Delta-G solvation = -17.362270 kcal Electronic energy + Delta-G solvation = -32078.690082 eV Core-core repulsion = 27875.550075 eV Total energy + Delta-G solvation = -4203.140008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.77313 -41.35110 -40.24974 -39.02088 -36.61503 -35.90965 -34.91443 -34.53322 -33.19668 -32.41829 -31.93183 -29.68785 -27.65388 -26.83513 -26.56067 -25.44583 -23.51692 -22.95812 -22.54557 -21.57224 -20.26654 -19.37461 -19.23986 -19.07094 -18.48596 -17.49260 -17.38646 -17.10329 -16.70312 -16.42885 -16.34837 -16.05861 -15.61529 -15.35160 -15.25496 -15.03245 -14.96279 -14.77020 -14.38401 -14.15362 -13.76331 -13.41650 -13.25871 -13.07876 -12.98277 -12.84912 -12.80276 -12.73530 -12.55064 -12.17604 -12.05076 -11.91535 -11.74834 -11.57393 -11.40158 -11.32647 -10.86858 -10.84131 -10.70556 -10.60813 -10.28024 -9.61140 -8.95014 -7.89516 -5.17690 -0.96021 -0.27495 1.38841 1.47802 1.50969 1.52152 1.56753 1.76962 2.04951 2.48675 2.58736 2.84803 2.92313 3.23016 3.42520 3.52988 3.76125 3.80740 3.88482 3.89981 4.06313 4.08257 4.27679 4.29090 4.32351 4.39111 4.43419 4.58288 4.63296 4.68648 4.76279 4.80068 5.02644 5.06438 5.14978 5.17048 5.26149 5.29780 5.50665 5.54363 5.60013 5.67967 5.74716 5.82489 6.16088 6.27196 6.32260 6.42289 7.01183 7.10575 7.37408 8.14444 8.38942 9.34075 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003153 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.538179 B = 8877.714040 C = 9910.434195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.586 5.586 3 C 0.588 3.412 4 O -0.545 6.545 5 C 0.081 3.919 6 N -0.443 5.443 7 C 0.087 3.913 8 C 0.084 3.916 9 N -0.407 5.407 10 C 0.039 3.961 11 C 0.566 3.434 12 N -0.807 5.807 13 O -0.546 6.546 14 C 0.158 3.842 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.178 3.822 18 N -0.737 5.737 19 C -0.235 4.235 20 H 0.075 0.925 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.276 1.276 27 C -0.103 4.103 28 C -0.129 4.129 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.221 0.779 33 H 0.240 0.760 34 H 0.423 0.577 35 H 0.418 0.582 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.369 0.631 43 H 0.249 0.751 44 H 0.040 0.960 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 15.294 -21.311 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.318 5.318 3 C 0.373 3.627 4 O -0.422 6.422 5 C -0.060 4.060 6 N -0.159 5.159 7 C -0.076 4.076 8 C -0.080 4.080 9 N -0.124 5.124 10 C -0.100 4.100 11 C 0.347 3.653 12 N -0.372 5.372 13 O -0.422 6.422 14 C 0.056 3.944 15 C -0.150 4.150 16 C -0.179 4.179 17 C 0.070 3.930 18 N -0.376 5.376 19 C -0.367 4.367 20 H 0.092 0.908 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.800 3.200 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.202 1.202 27 C -0.141 4.141 28 C -0.168 4.168 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.256 0.744 34 H 0.255 0.745 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.200 0.800 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.765 14.339 -21.296 25.734 hybrid contribution -0.404 0.023 0.995 1.074 sum -2.169 14.362 -20.301 24.962 Atomic orbital electron populations 1.22088 0.78775 1.04074 1.01586 1.47601 1.07419 1.04958 1.71869 1.17624 0.86309 0.83021 0.75715 1.90680 1.14583 1.86581 1.50327 1.21943 0.96308 0.96969 0.90813 1.68659 1.06968 1.17164 1.23150 1.25062 0.91014 0.88115 1.03447 1.24971 0.94721 1.01689 0.86638 1.68461 1.05398 1.10817 1.27769 1.21941 0.99751 0.93760 0.94568 1.17824 0.79863 0.83266 0.84299 1.43350 1.54607 1.30448 1.08782 1.90948 1.38641 1.26979 1.85669 1.21095 0.92713 0.82226 0.98373 1.21843 0.98492 0.97316 0.97394 1.22438 0.98963 1.02195 0.94346 1.20388 0.91819 0.95754 0.85068 1.42630 1.68610 1.06448 1.19907 1.19578 1.28082 0.88890 1.00106 0.90757 1.25521 1.03218 0.99028 0.99155 1.69829 1.50547 1.22022 1.19763 0.85249 0.78220 0.78928 0.77592 1.20775 1.22313 1.20242 1.21521 0.97749 0.98275 0.96601 1.21892 0.98247 1.03273 0.93371 0.92321 0.87643 0.92483 0.76273 0.74404 0.74501 0.74814 0.90446 0.89177 0.89057 0.93197 0.91287 0.94379 0.79990 0.94193 0.94162 0.93974 0.89712 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 8.08 127.77 1.03 3.01 16 2 N -0.59 -18.15 2.33 -825.47 -1.92 -20.07 16 3 C 0.59 20.63 4.45 86.93 0.39 21.02 16 4 O -0.54 -22.75 13.78 15.76 0.22 -22.53 16 5 C 0.08 2.36 4.83 42.16 0.20 2.57 16 6 N -0.44 -11.87 10.44 -183.37 -1.91 -13.79 16 7 C 0.09 1.31 11.23 84.87 0.95 2.27 16 8 C 0.08 0.83 11.23 84.88 0.95 1.78 16 9 N -0.41 -6.41 9.73 -183.38 -1.78 -8.19 16 10 C 0.04 0.93 6.78 42.16 0.29 1.22 16 11 C 0.57 13.66 8.06 86.92 0.70 14.36 16 12 N -0.81 -10.72 8.86 -175.29 -1.55 -12.28 16 13 O -0.55 -17.98 14.55 15.75 0.23 -17.75 16 14 C 0.16 4.74 3.08 44.99 0.14 4.88 16 15 C -0.11 -2.96 4.90 30.60 0.15 -2.81 16 16 C -0.14 -4.84 5.03 30.60 0.15 -4.69 16 17 C 0.18 7.41 2.77 45.00 0.12 7.54 16 18 N -0.74 -38.66 5.12 -322.93 -1.65 -40.32 16 19 C -0.23 -13.26 9.93 84.03 0.83 -12.43 16 20 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 22 N -0.97 -60.34 13.06 21.65 0.28 -60.05 16 23 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C -0.10 -4.07 5.22 30.60 0.16 -3.91 16 28 C -0.13 -4.39 5.09 30.60 0.16 -4.24 16 29 H 0.06 1.35 7.25 -2.39 -0.02 1.34 16 30 H 0.11 2.28 5.48 -2.38 -0.01 2.26 16 31 H 0.06 1.67 6.37 -2.38 -0.02 1.66 16 32 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.24 -0.34 8.06 -2.91 -0.02 -0.36 16 34 H 0.42 3.49 8.20 -92.71 -0.76 2.73 16 35 H 0.42 4.09 8.93 -92.71 -0.83 3.27 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 1.92 6.54 -2.39 -0.02 1.90 16 38 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.44 4.17 -2.38 -0.01 2.43 16 41 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 42 H 0.37 21.13 7.80 -92.71 -0.72 20.41 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.79 7.28 -2.39 -0.02 1.77 16 46 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 47 H 0.07 2.66 5.70 -2.39 -0.01 2.65 16 Total: -1.00 -85.21 373.67 -0.62 -85.83 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -1.25 Total: 33.88 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 6.70 Total: 26.53 kcal Atomic # 7 Polarization: -146.16 SS G_CDS: -8.54 Total: -154.70 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: 0.45 Total: -40.28 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -85.21 -0.62 -85.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964343561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.468 kcal (2) G-P(sol) polarization free energy of solvation -85.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds