Wall clock time and date at job start Wed Apr 1 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 119.99653 * 2 1 4 4 H 1.08004 * 119.99609 * 200.40403 * 3 2 1 5 5 C 1.38808 * 120.00292 * 20.39757 * 3 2 1 6 6 N 1.31619 * 119.99736 * 15.00588 * 5 3 2 7 7 Si 1.86793 * 120.00130 * 195.00298 * 5 3 2 8 8 H 1.48497 * 109.47330 * 85.00377 * 7 5 3 9 9 H 1.48498 * 109.47099 * 205.00361 * 7 5 3 10 10 H 1.48493 * 109.47362 * 325.00035 * 7 5 3 11 11 C 1.46495 * 120.00259 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.77813 * 183.24040 * 11 2 1 13 13 C 1.55403 * 110.85316 * 306.53929 * 11 2 1 14 14 C 1.54915 * 101.66725 * 153.70249 * 13 11 2 15 15 N 1.47421 * 104.82836 * 323.07406 * 14 13 11 16 16 C 1.34774 * 125.64909 * 204.16270 * 15 14 13 17 17 O 1.21282 * 120.00356 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99951 * 359.96512 * 16 15 14 19 19 H 1.08997 * 110.85920 * 56.20611 * 18 16 15 20 20 C 1.54632 * 110.96598 * 292.37687 * 18 16 15 21 21 C 1.51291 * 104.19425 * 217.08246 * 20 18 16 22 22 O 1.21303 * 124.93867 * 196.28776 * 21 20 18 23 23 N 1.34419 * 110.11364 * 16.25225 * 21 20 18 24 24 C 1.40766 * 124.34844 * 180.38329 * 23 21 20 25 25 C 1.40247 * 126.08077 * 179.71126 * 24 23 21 26 26 N 1.30831 * 108.33326 * 179.81660 * 25 24 23 27 27 N 1.40069 * 108.37042 * 0.45012 * 26 25 24 28 28 H 0.97001 * 126.05182 * 179.73731 * 27 26 25 29 29 C 1.35753 * 126.07796 * 0.02916 * 24 23 21 30 30 C 1.46765 * 111.30309 * 0.40824 * 23 21 20 31 31 C 1.47025 * 108.70562 * 24.12850 * 15 14 13 32 32 H 1.09001 * 109.47144 * 275.13784 * 1 2 3 33 33 H 1.08995 * 109.47355 * 35.14239 * 1 2 3 34 34 H 1.09000 * 109.46794 * 155.14748 * 1 2 3 35 35 H 0.97000 * 119.99967 * 179.97438 * 6 5 3 36 36 H 1.09002 * 110.89211 * 35.62920 * 13 11 2 37 37 H 1.09007 * 111.07001 * 271.84945 * 13 11 2 38 38 H 1.09002 * 110.36270 * 204.23735 * 14 13 11 39 39 H 1.09001 * 110.36549 * 81.91200 * 14 13 11 40 40 H 1.08999 * 110.48538 * 335.75757 * 20 18 16 41 41 H 1.09000 * 110.48597 * 98.40606 * 20 18 16 42 42 H 1.08001 * 125.83433 * 0.02562 * 25 24 23 43 43 H 1.08004 * 126.22119 * 359.97438 * 29 24 23 44 44 H 1.08999 * 110.24443 * 223.98313 * 30 23 21 45 45 H 1.08994 * 110.24766 * 101.98190 * 30 23 21 46 46 H 1.09003 * 109.87986 * 118.35347 * 31 15 14 47 47 H 1.08990 * 109.88667 * 239.36704 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1788 1.2153 -0.3261 5 6 1.5209 2.3504 0.4190 6 7 0.3883 2.2832 1.0861 7 14 2.2821 4.0127 0.0361 8 1 1.8668 4.4463 -1.3221 9 1 1.8226 5.0097 1.0360 10 1 3.7620 3.9036 0.0899 11 6 2.1975 -1.2686 0.0006 12 1 3.2721 -1.0947 0.0581 13 6 1.7254 -2.1795 1.1678 14 6 2.0477 -3.5901 0.6144 15 7 1.7477 -3.5078 -0.8266 16 6 1.4347 -4.5479 -1.6244 17 8 1.2053 -4.3623 -2.8008 18 6 1.3701 -5.9416 -1.0549 19 1 0.6711 -5.9876 -0.2199 20 6 2.7739 -6.4314 -0.6302 21 6 2.7771 -7.9019 -0.9859 22 8 3.5737 -8.7159 -0.5684 23 7 1.7684 -8.1752 -1.8313 24 6 1.4898 -9.4545 -2.3482 25 6 0.4460 -9.7813 -3.2260 26 7 0.5114 -11.0622 -3.4845 27 7 1.5915 -11.6013 -2.7740 28 1 1.8701 -12.5304 -2.7770 29 6 2.1800 -10.5925 -2.0808 30 6 0.9953 -6.9682 -2.1468 31 6 1.8455 -2.1029 -1.2490 32 1 -0.3633 0.0920 1.0235 33 1 -0.3634 0.8403 -0.5915 34 1 -0.3633 -0.9325 -0.4319 35 1 -0.0510 3.0969 1.3792 36 1 0.6558 -2.0636 1.3431 37 1 2.2923 -1.9774 2.0766 38 1 1.4149 -4.3385 1.0916 39 1 3.1002 -3.8272 0.7699 40 1 3.5472 -5.9025 -1.1872 41 1 2.9161 -6.2981 0.4423 42 1 -0.2848 -9.0926 -3.6237 43 1 3.0409 -10.6798 -1.4345 44 1 -0.0725 -7.1842 -2.1108 45 1 1.2714 -6.5899 -3.1309 46 1 2.6289 -1.9952 -1.9993 47 1 0.8916 -1.7718 -1.6592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971526017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:25 Heat of formation + Delta-G solvation = 52.205192 kcal Electronic energy + Delta-G solvation = -30390.089439 eV Core-core repulsion = 26189.966102 eV Total energy + Delta-G solvation = -4200.123336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.88780 -40.76468 -39.54054 -37.69382 -36.51962 -34.92288 -33.47575 -31.72799 -31.58402 -29.88639 -29.14055 -28.17717 -27.82031 -26.10749 -24.58319 -23.15271 -22.65713 -22.36739 -21.40599 -19.71422 -19.36670 -19.10624 -18.48674 -17.62973 -17.08733 -16.71785 -16.17752 -15.94093 -15.50934 -15.17240 -14.91859 -14.81204 -14.66523 -14.17402 -14.02784 -13.76213 -13.56033 -13.44687 -13.39589 -13.05641 -12.61741 -12.56015 -12.39444 -11.95207 -11.87215 -11.68720 -11.45276 -11.36599 -11.01366 -10.84886 -10.70043 -10.65912 -10.52227 -10.34200 -10.31086 -10.04606 -9.96403 -9.92066 -9.76060 -8.63024 -8.48891 -8.06973 -6.91151 -5.82084 -3.27118 1.41669 1.89888 2.17151 2.52850 2.72755 2.75585 3.00668 3.34587 3.41473 3.41780 3.81335 3.94798 4.33767 4.41636 4.42922 4.53253 4.62270 4.76928 4.92347 5.06318 5.13633 5.15347 5.18021 5.25155 5.27367 5.36345 5.46155 5.47559 5.57327 5.67359 5.72029 5.81712 5.91149 6.21374 6.29223 6.41124 6.43608 6.55362 6.63904 6.70951 6.78170 6.84630 7.21175 7.29982 7.58510 7.64454 7.73289 7.75400 8.12341 8.28342 9.12768 9.75654 10.22699 11.22937 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032687 B = 0.001956 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.403548 B =14309.899354 C =14641.211307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.152 4.152 14 C 0.096 3.904 15 N -0.605 5.605 16 C 0.536 3.464 17 O -0.540 6.540 18 C -0.119 4.119 19 H 0.120 0.880 20 C -0.138 4.138 21 C 0.519 3.481 22 O -0.524 6.524 23 N -0.534 5.534 24 C 0.009 3.991 25 C 0.044 3.956 26 N -0.278 5.278 27 N -0.474 5.474 28 H 0.445 0.555 29 C 0.042 3.958 30 C 0.117 3.883 31 C 0.086 3.914 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.001 0.999 35 H 0.254 0.746 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.189 0.811 43 H 0.192 0.808 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -23.458 -2.421 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.027 4.027 15 N -0.338 5.338 16 C 0.323 3.677 17 O -0.417 6.417 18 C -0.141 4.141 19 H 0.138 0.862 20 C -0.179 4.179 21 C 0.308 3.692 22 O -0.400 6.400 23 N -0.260 5.260 24 C -0.093 4.093 25 C -0.145 4.145 26 N -0.101 5.101 27 N -0.186 5.186 28 H 0.290 0.710 29 C -0.107 4.107 30 C -0.006 4.006 31 C -0.039 4.039 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.206 0.794 43 H 0.209 0.791 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.080 0.920 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.292 -24.601 -3.444 24.875 hybrid contribution 0.721 1.290 0.417 1.536 sum 2.013 -23.311 -3.027 23.593 Atomic orbital electron populations 1.20794 0.82336 0.95662 0.99590 1.43892 1.01926 0.99902 1.84899 1.19223 0.97094 0.84780 1.37975 0.91077 1.24973 0.97792 0.98481 0.98228 1.70084 1.18806 1.27037 1.38967 0.86243 0.78653 0.83759 0.77686 1.21379 1.21744 1.20494 1.21326 0.96480 0.85986 0.89946 0.90214 1.23425 1.02913 0.92660 1.00226 1.22463 1.00317 0.99636 0.80288 1.48454 1.67313 1.07833 1.10208 1.19531 0.77402 0.84979 0.85835 1.90723 1.50173 1.84945 1.15895 1.22189 0.98845 0.93027 1.00042 0.86245 1.22304 0.97371 0.92912 1.05268 1.20855 0.79756 0.90756 0.77848 1.90673 1.40605 1.53368 1.55354 1.45205 1.30494 1.05801 1.44530 1.17581 1.01051 0.85073 1.05613 1.23734 0.98892 0.93494 0.98388 1.77290 1.05773 1.09688 1.17310 1.46158 1.24471 1.10460 1.37498 0.71005 1.22545 1.00748 0.87180 1.00193 1.22108 0.96934 0.81842 0.99674 1.22874 1.02305 0.78751 0.99933 0.94945 0.93746 0.98070 0.93617 0.90499 0.90204 0.91169 0.91227 0.86843 0.86578 0.79418 0.79135 0.89032 0.88074 0.91955 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 7.46 59.85 0.45 4.14 16 2 N -0.59 -13.48 2.94 -171.24 -0.50 -13.98 16 3 C -0.26 -6.74 9.63 -15.06 -0.14 -6.89 16 4 H 0.07 1.79 7.85 -52.48 -0.41 1.37 16 5 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 6 N -0.90 -25.19 10.67 55.49 0.59 -24.60 16 7 Si 0.91 21.06 29.58 -169.99 -5.03 16.04 16 8 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 C 0.17 3.10 3.44 -65.97 -0.23 2.87 16 12 H 0.08 1.41 7.94 -51.93 -0.41 1.00 16 13 C -0.15 -2.21 6.63 -24.45 -0.16 -2.38 16 14 C 0.10 1.03 5.97 -2.53 -0.02 1.02 16 15 N -0.61 -7.98 3.33 -170.52 -0.57 -8.55 16 16 C 0.54 6.77 7.10 -10.99 -0.08 6.69 16 17 O -0.54 -8.76 15.83 5.56 0.09 -8.67 16 18 C -0.12 -1.02 2.78 -90.14 -0.25 -1.27 16 19 H 0.12 0.80 7.72 -51.93 -0.40 0.40 16 20 C -0.14 -1.13 5.72 -26.74 -0.15 -1.29 16 21 C 0.52 5.47 7.98 -10.86 -0.09 5.39 16 22 O -0.52 -6.84 15.64 5.54 0.09 -6.75 16 23 N -0.53 -5.17 3.16 -112.48 -0.36 -5.52 16 24 C 0.01 0.09 6.80 -83.89 -0.57 -0.48 16 25 C 0.04 0.40 11.53 -17.22 -0.20 0.20 16 26 N -0.28 -2.73 12.69 30.70 0.39 -2.35 16 27 N -0.47 -3.69 7.40 30.69 0.23 -3.47 16 28 H 0.45 1.95 8.96 -182.62 -1.64 0.31 16 29 C 0.04 0.38 11.18 -16.68 -0.19 0.19 16 30 C 0.12 1.00 6.29 -3.12 -0.02 0.98 16 31 C 0.09 1.41 6.37 -3.06 -0.02 1.39 16 32 H 0.03 0.80 7.40 -51.93 -0.38 0.42 16 33 H 0.04 1.13 7.22 -51.93 -0.37 0.75 16 34 H 0.00 0.02 6.60 -51.93 -0.34 -0.33 16 35 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 36 H 0.08 1.24 7.08 -51.93 -0.37 0.87 16 37 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 38 H 0.07 0.58 7.39 -51.93 -0.38 0.20 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.96 7.89 -51.93 -0.41 0.55 16 41 H 0.12 0.75 8.01 -51.93 -0.42 0.34 16 42 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.19 1.69 6.51 -52.48 -0.34 1.35 16 44 H 0.09 0.62 8.13 -51.93 -0.42 0.20 16 45 H 0.10 1.00 6.96 -51.93 -0.36 0.64 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 1.38 6.48 -51.93 -0.34 1.05 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -33.28 379.42 -8.93 -42.22 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.83 Total: -0.68 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -1.75 Total: 10.60 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.22 Total: -58.46 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.17 Total: -15.42 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.28 -8.93 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971526017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.420 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds