Wall clock time and date at job start Wed Apr 1 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 119.99653 * 2 1 4 4 H 1.08004 * 119.99609 * 200.40403 * 3 2 1 5 5 C 1.38808 * 120.00292 * 20.39757 * 3 2 1 6 6 N 1.31619 * 119.99736 * 15.00588 * 5 3 2 7 7 Si 1.86793 * 120.00130 * 195.00298 * 5 3 2 8 8 H 1.48497 * 109.47330 * 85.00377 * 7 5 3 9 9 H 1.48498 * 109.47099 * 205.00361 * 7 5 3 10 10 H 1.48493 * 109.47362 * 325.00035 * 7 5 3 11 11 C 1.46495 * 120.00259 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.77813 * 183.24040 * 11 2 1 13 13 C 1.55403 * 110.85316 * 306.53929 * 11 2 1 14 14 C 1.54915 * 101.66725 * 153.70249 * 13 11 2 15 15 N 1.47421 * 104.82836 * 323.07406 * 14 13 11 16 16 C 1.34774 * 125.64909 * 204.16270 * 15 14 13 17 17 O 1.21282 * 120.00356 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99951 * 359.96512 * 16 15 14 19 19 H 1.08997 * 110.85920 * 56.20611 * 18 16 15 20 20 C 1.54632 * 110.96598 * 292.37687 * 18 16 15 21 21 C 1.51291 * 104.19425 * 217.08246 * 20 18 16 22 22 O 1.21303 * 124.93867 * 196.28776 * 21 20 18 23 23 N 1.34419 * 110.11364 * 16.25225 * 21 20 18 24 24 C 1.40766 * 124.34844 * 180.38329 * 23 21 20 25 25 C 1.40247 * 126.08077 * 179.71126 * 24 23 21 26 26 N 1.30831 * 108.33326 * 179.81660 * 25 24 23 27 27 N 1.40069 * 108.37042 * 0.45012 * 26 25 24 28 28 H 0.97001 * 126.05182 * 179.73731 * 27 26 25 29 29 C 1.35753 * 126.07796 * 0.02916 * 24 23 21 30 30 C 1.46765 * 111.30309 * 0.40824 * 23 21 20 31 31 C 1.47025 * 108.70562 * 24.12850 * 15 14 13 32 32 H 1.09001 * 109.47144 * 275.13784 * 1 2 3 33 33 H 1.08995 * 109.47355 * 35.14239 * 1 2 3 34 34 H 1.09000 * 109.46794 * 155.14748 * 1 2 3 35 35 H 0.97000 * 119.99967 * 179.97438 * 6 5 3 36 36 H 1.09002 * 110.89211 * 35.62920 * 13 11 2 37 37 H 1.09007 * 111.07001 * 271.84945 * 13 11 2 38 38 H 1.09002 * 110.36270 * 204.23735 * 14 13 11 39 39 H 1.09001 * 110.36549 * 81.91200 * 14 13 11 40 40 H 1.08999 * 110.48538 * 335.75757 * 20 18 16 41 41 H 1.09000 * 110.48597 * 98.40606 * 20 18 16 42 42 H 1.08001 * 125.83433 * 0.02562 * 25 24 23 43 43 H 1.08004 * 126.22119 * 359.97438 * 29 24 23 44 44 H 1.08999 * 110.24443 * 223.98313 * 30 23 21 45 45 H 1.08994 * 110.24766 * 101.98190 * 30 23 21 46 46 H 1.09003 * 109.87986 * 118.35347 * 31 15 14 47 47 H 1.08990 * 109.88667 * 239.36704 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1788 1.2153 -0.3261 5 6 1.5209 2.3504 0.4190 6 7 0.3883 2.2832 1.0861 7 14 2.2821 4.0127 0.0361 8 1 1.8668 4.4463 -1.3221 9 1 1.8226 5.0097 1.0360 10 1 3.7620 3.9036 0.0899 11 6 2.1975 -1.2686 0.0006 12 1 3.2721 -1.0947 0.0581 13 6 1.7254 -2.1795 1.1678 14 6 2.0477 -3.5901 0.6144 15 7 1.7477 -3.5078 -0.8266 16 6 1.4347 -4.5479 -1.6244 17 8 1.2053 -4.3623 -2.8008 18 6 1.3701 -5.9416 -1.0549 19 1 0.6711 -5.9876 -0.2199 20 6 2.7739 -6.4314 -0.6302 21 6 2.7771 -7.9019 -0.9859 22 8 3.5737 -8.7159 -0.5684 23 7 1.7684 -8.1752 -1.8313 24 6 1.4898 -9.4545 -2.3482 25 6 0.4460 -9.7813 -3.2260 26 7 0.5114 -11.0622 -3.4845 27 7 1.5915 -11.6013 -2.7740 28 1 1.8701 -12.5304 -2.7770 29 6 2.1800 -10.5925 -2.0808 30 6 0.9953 -6.9682 -2.1468 31 6 1.8455 -2.1029 -1.2490 32 1 -0.3633 0.0920 1.0235 33 1 -0.3634 0.8403 -0.5915 34 1 -0.3633 -0.9325 -0.4319 35 1 -0.0510 3.0969 1.3792 36 1 0.6558 -2.0636 1.3431 37 1 2.2923 -1.9774 2.0766 38 1 1.4149 -4.3385 1.0916 39 1 3.1002 -3.8272 0.7699 40 1 3.5472 -5.9025 -1.1872 41 1 2.9161 -6.2981 0.4423 42 1 -0.2848 -9.0926 -3.6237 43 1 3.0409 -10.6798 -1.4345 44 1 -0.0725 -7.1842 -2.1108 45 1 1.2714 -6.5899 -3.1309 46 1 2.6289 -1.9952 -1.9993 47 1 0.8916 -1.7718 -1.6592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971526017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:22 Heat of formation + Delta-G solvation = 29.468514 kcal Electronic energy + Delta-G solvation = -30391.075375 eV Core-core repulsion = 26189.966102 eV Total energy + Delta-G solvation = -4201.109273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.59609 -41.59112 -40.52631 -38.92973 -37.38723 -36.52320 -34.28985 -33.28746 -32.33376 -31.24126 -30.00598 -29.08308 -28.80681 -28.03264 -25.76492 -24.23653 -23.71321 -23.37245 -22.10675 -20.85219 -20.41862 -20.06976 -19.20144 -18.91242 -18.47026 -17.54356 -17.38326 -17.04146 -16.52396 -16.20492 -16.03020 -15.59702 -15.53558 -15.40083 -15.06709 -14.89483 -14.73246 -14.56763 -14.35117 -14.17243 -13.91773 -13.73246 -13.53889 -13.17406 -12.95295 -12.80995 -12.60024 -12.47308 -12.42321 -12.34645 -12.18351 -12.06376 -12.03912 -11.78737 -11.42403 -11.37524 -11.19729 -10.77882 -10.72071 -10.60763 -9.60176 -8.80712 -8.78305 -7.82176 -5.27631 0.72508 1.17245 1.48477 1.49576 1.51460 1.57759 1.58446 1.92283 2.01274 2.19827 2.53243 3.06133 3.25969 3.30932 3.55883 3.63463 3.75085 3.89720 3.90495 3.97833 4.05041 4.19313 4.35090 4.42454 4.44141 4.46989 4.53866 4.55025 4.65619 4.72116 4.78661 4.83668 4.91288 4.98846 5.06966 5.08348 5.22064 5.31817 5.39923 5.47277 5.66485 5.72423 5.73864 5.93862 6.28085 6.32758 6.57216 6.58960 6.99955 7.11101 7.16258 7.87689 8.30314 9.21360 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032687 B = 0.001956 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.403548 B =14309.899354 C =14641.211307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.075 0.925 5 C -0.052 4.052 6 N -0.935 5.935 7 Si 0.965 3.035 8 H -0.290 1.290 9 H -0.297 1.297 10 H -0.267 1.267 11 C 0.164 3.836 12 H 0.082 0.918 13 C -0.145 4.145 14 C 0.104 3.896 15 N -0.606 5.606 16 C 0.537 3.463 17 O -0.580 6.580 18 C -0.104 4.104 19 H 0.152 0.848 20 C -0.130 4.130 21 C 0.513 3.487 22 O -0.555 6.555 23 N -0.531 5.531 24 C -0.013 4.013 25 C 0.043 3.957 26 N -0.301 5.301 27 N -0.463 5.463 28 H 0.458 0.542 29 C 0.043 3.957 30 C 0.117 3.883 31 C 0.099 3.901 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.025 0.975 35 H 0.247 0.753 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.209 0.791 43 H 0.193 0.807 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -25.340 -1.705 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.325 5.325 3 C -0.393 4.393 4 H 0.093 0.907 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.218 1.218 9 H -0.224 1.224 10 H -0.192 1.192 11 C 0.055 3.945 12 H 0.100 0.900 13 C -0.184 4.184 14 C -0.018 4.018 15 N -0.338 5.338 16 C 0.326 3.674 17 O -0.460 6.460 18 C -0.125 4.125 19 H 0.170 0.830 20 C -0.170 4.170 21 C 0.303 3.697 22 O -0.433 6.433 23 N -0.256 5.256 24 C -0.116 4.116 25 C -0.145 4.145 26 N -0.124 5.124 27 N -0.177 5.177 28 H 0.305 0.695 29 C -0.107 4.107 30 C -0.005 4.005 31 C -0.027 4.027 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.161 0.839 42 H 0.225 0.775 43 H 0.210 0.790 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.021 -26.551 -2.734 26.767 hybrid contribution 0.539 1.774 0.112 1.858 sum 2.560 -24.776 -2.622 25.046 Atomic orbital electron populations 1.20431 0.82858 0.95341 0.97678 1.44056 1.01944 1.01156 1.85312 1.19563 0.97260 0.86055 1.36383 0.90690 1.25675 0.98585 1.01493 0.98963 1.70229 1.20200 1.27149 1.40627 0.85310 0.78466 0.80035 0.76791 1.21759 1.22353 1.19209 1.21535 0.96146 0.84731 0.92085 0.90026 1.23264 1.01796 0.94293 0.99090 1.22634 1.02974 0.97882 0.78312 1.48475 1.67490 1.06416 1.11430 1.20176 0.75952 0.86082 0.85187 1.90718 1.51710 1.85714 1.17875 1.22139 1.00007 0.89754 1.00620 0.83029 1.22332 0.96823 0.90954 1.06909 1.21249 0.79388 0.91471 0.77638 1.90659 1.41709 1.54344 1.56615 1.45264 1.30366 1.05941 1.44076 1.17836 1.01791 0.85452 1.06482 1.24072 0.98980 0.93529 0.97889 1.77255 1.06677 1.10277 1.18161 1.46201 1.23761 1.11037 1.36671 0.69454 1.22639 1.00604 0.87452 0.99984 1.22140 0.97996 0.81443 0.98928 1.22404 1.00469 0.80957 0.98820 0.97166 0.97092 0.95677 0.94332 0.92160 0.89513 0.87286 0.88348 0.87009 0.83862 0.77458 0.79020 0.86909 0.89677 0.92683 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.57 7.46 127.77 0.95 9.53 16 2 N -0.60 -27.96 2.94 -695.68 -2.04 -30.00 16 3 C -0.26 -13.63 9.63 84.03 0.81 -12.82 16 4 H 0.08 3.75 7.85 -2.91 -0.02 3.72 16 5 C -0.05 -2.80 5.06 84.86 0.43 -2.37 16 6 N -0.94 -53.49 10.67 21.65 0.23 -53.26 16 7 Si 0.97 43.84 29.58 68.60 2.03 45.87 16 8 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 9 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 C 0.16 5.68 3.44 46.27 0.16 5.84 16 12 H 0.08 2.79 7.94 -2.38 -0.02 2.77 16 13 C -0.14 -3.86 6.63 32.08 0.21 -3.65 16 14 C 0.10 1.77 5.97 86.86 0.52 2.28 16 15 N -0.61 -14.29 3.33 -811.80 -2.70 -16.99 16 16 C 0.54 12.17 7.10 87.66 0.62 12.80 16 17 O -0.58 -18.19 15.83 -3.04 -0.05 -18.23 16 18 C -0.10 -1.38 2.78 -10.48 -0.03 -1.41 16 19 H 0.15 1.15 7.72 -2.39 -0.02 1.13 16 20 C -0.13 -1.64 5.72 30.59 0.18 -1.46 16 21 C 0.51 9.55 7.98 87.90 0.70 10.25 16 22 O -0.55 -13.53 15.64 -3.10 -0.05 -13.57 16 23 N -0.53 -9.10 3.16 -628.36 -1.99 -11.08 16 24 C -0.01 -0.24 6.80 37.62 0.26 0.02 16 25 C 0.04 0.72 11.53 85.33 0.98 1.70 16 26 N -0.30 -5.51 12.69 -56.78 -0.72 -6.23 16 27 N -0.46 -6.63 7.40 -56.81 -0.42 -7.05 16 28 H 0.46 3.45 8.96 -213.34 -1.91 1.53 16 29 C 0.04 0.72 11.18 83.50 0.93 1.66 16 30 C 0.12 1.69 6.29 86.83 0.55 2.24 16 31 C 0.10 3.18 6.37 86.73 0.55 3.73 16 32 H 0.01 0.52 7.40 -2.39 -0.02 0.50 16 33 H 0.01 0.55 7.22 -2.39 -0.02 0.53 16 34 H 0.02 1.03 6.60 -2.39 -0.02 1.01 16 35 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.06 1.83 7.08 -2.39 -0.02 1.82 16 37 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.11 1.13 7.39 -2.39 -0.02 1.11 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.53 7.89 -2.39 -0.02 1.51 16 41 H 0.14 1.07 8.01 -2.39 -0.02 1.05 16 42 H 0.21 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.19 3.22 6.51 -2.91 -0.02 3.20 16 44 H 0.11 1.16 8.13 -2.39 -0.02 1.14 16 45 H 0.09 1.56 6.96 -2.39 -0.02 1.55 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.05 1.73 6.48 -2.39 -0.02 1.72 16 Total: -1.00 -74.80 379.42 1.22 -73.58 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -0.90 Total: 8.64 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 7.82 Total: 28.33 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -7.64 Total: -124.61 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.10 Total: -31.81 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.80 1.22 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971526017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.048 kcal (2) G-P(sol) polarization free energy of solvation -74.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds