Wall clock time and date at job start Wed Apr 1 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 120.00304 * 2 1 4 4 H 1.07997 * 120.00389 * 201.91979 * 3 2 1 5 5 C 1.38819 * 119.99812 * 21.90857 * 3 2 1 6 6 N 1.31613 * 119.99916 * 11.05375 * 5 3 2 7 7 Si 1.86800 * 119.99782 * 191.04919 * 5 3 2 8 8 H 1.48492 * 109.47324 * 60.00281 * 7 5 3 9 9 H 1.48501 * 109.46988 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47257 * 300.00205 * 7 5 3 11 11 C 1.46497 * 119.99794 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.78284 * 178.21594 * 11 2 1 13 13 C 1.55159 * 110.72382 * 301.45603 * 11 2 1 14 14 C 1.54905 * 101.61946 * 153.84913 * 13 11 2 15 15 N 1.47474 * 104.80892 * 323.03939 * 14 13 11 16 16 C 1.34777 * 125.62794 * 204.14525 * 15 14 13 17 17 O 1.21281 * 120.00021 * 179.91532 * 16 15 14 18 18 C 1.50700 * 120.00192 * 359.91788 * 16 15 14 19 19 H 1.09004 * 110.85371 * 303.78903 * 18 16 15 20 20 C 1.54626 * 110.96841 * 67.61944 * 18 16 15 21 21 C 1.51281 * 104.19362 * 93.32361 * 20 18 16 22 22 O 1.21310 * 124.93979 * 196.21207 * 21 20 18 23 23 N 1.34414 * 110.11676 * 16.25023 * 21 20 18 24 24 C 1.40768 * 124.35098 * 180.42779 * 23 21 20 25 25 C 1.40243 * 126.08108 * 179.66832 * 24 23 21 26 26 N 1.30833 * 108.33698 * 179.82005 * 25 24 23 27 27 N 1.40071 * 108.36531 * 0.43610 * 26 25 24 28 28 H 0.97003 * 126.05297 * 179.69726 * 27 26 25 29 29 C 1.35751 * 126.07527 * 359.97438 * 24 23 21 30 30 C 1.46759 * 111.30204 * 0.41101 * 23 21 20 31 31 C 1.47023 * 108.72080 * 24.07427 * 15 14 13 32 32 H 1.08998 * 109.47322 * 275.09127 * 1 2 3 33 33 H 1.09000 * 109.46826 * 35.08830 * 1 2 3 34 34 H 1.09001 * 109.47415 * 155.08985 * 1 2 3 35 35 H 0.97002 * 119.99856 * 179.97438 * 6 5 3 36 36 H 1.09006 * 111.00100 * 271.94521 * 13 11 2 37 37 H 1.08999 * 111.00211 * 35.74609 * 13 11 2 38 38 H 1.08989 * 110.37136 * 81.84877 * 14 13 11 39 39 H 1.09006 * 110.36236 * 204.17287 * 14 13 11 40 40 H 1.09009 * 110.48561 * 211.99852 * 20 18 16 41 41 H 1.08996 * 110.49191 * 334.64209 * 20 18 16 42 42 H 1.08003 * 125.83530 * 359.97438 * 25 24 23 43 43 H 1.08001 * 126.22710 * 359.95785 * 29 24 23 44 44 H 1.09004 * 110.24461 * 223.98285 * 30 23 21 45 45 H 1.09001 * 110.32264 * 102.02043 * 30 23 21 46 46 H 1.08998 * 109.88099 * 239.55718 * 31 15 14 47 47 H 1.08999 * 110.00990 * 118.46586 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1712 1.2197 -0.3491 5 6 1.5309 2.3446 0.4486 6 7 0.3743 2.2737 1.0727 7 14 2.3397 4.0046 0.1665 8 1 2.5109 4.2306 -1.2911 9 1 1.4836 5.0757 0.7368 10 1 3.6680 4.0273 0.8302 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0944 -0.0312 13 6 1.8161 -2.1223 1.2389 14 6 2.1001 -3.5570 0.7283 15 7 1.6924 -3.5403 -0.6888 16 6 1.3238 -4.6160 -1.4124 17 8 1.0051 -4.4844 -2.5752 18 6 1.3075 -5.9822 -0.7766 19 1 2.2836 -6.2270 -0.3577 20 6 0.2022 -6.0781 0.3005 21 6 -0.9898 -6.6427 -0.4404 22 8 -2.1341 -6.6155 -0.0386 23 7 -0.5964 -7.1795 -1.6082 24 6 -1.4650 -7.7809 -2.5385 25 6 -1.0957 -8.3454 -3.7681 26 7 -2.1732 -8.8068 -4.3493 27 7 -3.2697 -8.5452 -3.5178 28 1 -4.1938 -8.7750 -3.7024 29 6 -2.8097 -7.9125 -2.4075 30 6 0.8549 -7.0578 -1.7889 31 6 1.7531 -2.1563 -1.1811 32 1 -0.3634 0.0912 1.0236 33 1 -0.3633 0.8409 -0.5907 34 1 -0.3634 -0.9321 -0.4328 35 1 -0.0580 3.0834 1.3865 36 1 2.4498 -1.8784 2.0916 37 1 0.7627 -1.9981 1.4896 38 1 3.1619 -3.7871 0.8146 39 1 1.5073 -4.2822 1.2858 40 1 0.5075 -6.7516 1.1015 41 1 -0.0290 -5.0903 0.6989 42 1 -0.0928 -8.3934 -4.1660 43 1 -3.4056 -7.5759 -1.5720 44 1 1.0828 -6.7383 -2.8059 45 1 1.3442 -8.0078 -1.5740 46 1 0.7689 -1.8435 -1.5300 47 1 2.4756 -2.0808 -1.9937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971526019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:37 Heat of formation + Delta-G solvation = 55.657868 kcal Electronic energy + Delta-G solvation = -30977.740922 eV Core-core repulsion = 26777.767305 eV Total energy + Delta-G solvation = -4199.973617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.79935 -40.73819 -39.38445 -37.63794 -36.38029 -34.90168 -33.41787 -31.65147 -31.49084 -29.86402 -29.04368 -28.08796 -27.78138 -26.09195 -24.57497 -23.04875 -22.61184 -22.32612 -21.34707 -19.61420 -19.34055 -19.15765 -18.35758 -17.55166 -17.09219 -16.54114 -16.22474 -15.79837 -15.48429 -15.06072 -14.89286 -14.71681 -14.63291 -14.10492 -13.98807 -13.71544 -13.43287 -13.32917 -13.04248 -12.96958 -12.74478 -12.53028 -12.34936 -11.99420 -11.88666 -11.65424 -11.44601 -11.24859 -10.98418 -10.81701 -10.63752 -10.60987 -10.47674 -10.30995 -10.07501 -9.94337 -9.91204 -9.90402 -9.74698 -8.61119 -8.44096 -7.93530 -6.86761 -5.78679 -3.26077 1.55210 2.03023 2.31477 2.57817 2.84181 2.94157 3.00652 3.35480 3.41586 3.42162 3.90528 3.97851 4.26774 4.43388 4.47851 4.62982 4.73183 4.92465 4.94565 5.07480 5.18230 5.20868 5.26908 5.27337 5.37117 5.40107 5.41439 5.51072 5.54791 5.70670 5.83027 5.84281 5.94289 6.23369 6.32246 6.47026 6.55105 6.57992 6.77346 6.77768 6.81722 6.97614 7.34000 7.35385 7.63083 7.69277 7.75837 7.88528 8.18268 8.31927 9.15864 9.77968 10.25924 11.25911 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002330 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.972565 B =12016.423312 C =12259.393802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.092 3.908 15 N -0.607 5.607 16 C 0.528 3.472 17 O -0.536 6.536 18 C -0.121 4.121 19 H 0.128 0.872 20 C -0.144 4.144 21 C 0.517 3.483 22 O -0.522 6.522 23 N -0.529 5.529 24 C 0.013 3.987 25 C 0.045 3.955 26 N -0.280 5.280 27 N -0.474 5.474 28 H 0.445 0.555 29 C 0.041 3.959 30 C 0.117 3.883 31 C 0.086 3.914 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.000 1.000 35 H 0.254 0.746 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.187 0.813 43 H 0.191 0.809 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 -23.187 -1.778 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.031 4.031 15 N -0.340 5.340 16 C 0.315 3.685 17 O -0.414 6.414 18 C -0.142 4.142 19 H 0.146 0.854 20 C -0.184 4.184 21 C 0.305 3.695 22 O -0.398 6.398 23 N -0.255 5.255 24 C -0.089 4.089 25 C -0.144 4.144 26 N -0.103 5.103 27 N -0.186 5.186 28 H 0.289 0.711 29 C -0.107 4.107 30 C -0.006 4.006 31 C -0.038 4.038 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.204 0.796 43 H 0.208 0.792 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.144 -23.546 -3.191 23.762 hybrid contribution 0.339 1.371 0.648 1.554 sum 0.194 -22.175 -2.543 22.321 Atomic orbital electron populations 1.20817 0.82291 0.95625 0.99595 1.43868 1.01932 0.99861 1.85057 1.19179 0.97764 0.85174 1.36942 0.91213 1.25025 0.97530 0.98578 0.98278 1.70060 1.17270 1.27290 1.40447 0.86289 0.78476 0.83512 0.77953 1.21012 1.21616 1.20883 1.21285 0.96321 0.85982 0.90108 0.90268 1.23406 1.03042 0.92424 1.00426 1.22541 0.99641 0.99754 0.81117 1.48459 1.65294 1.07744 1.12527 1.19754 0.77589 0.84943 0.86182 1.90726 1.48432 1.85550 1.16652 1.22297 1.01670 0.93634 0.96649 0.85393 1.22412 0.92895 1.05053 0.98067 1.20848 0.90079 0.77537 0.81020 1.90679 1.20968 1.57872 1.70299 1.45063 1.07536 1.55341 1.17574 1.17549 0.89515 1.08433 0.93422 1.23668 0.98902 0.99240 0.92548 1.77260 0.92933 1.23148 1.16911 1.46131 1.09556 1.48096 1.14836 0.71059 1.22536 0.94501 1.00235 0.93448 1.22097 0.78518 0.98048 1.01918 1.22801 1.02502 0.79446 0.99085 0.94955 0.93624 0.98180 0.93579 0.90225 0.90552 0.91252 0.90984 0.86139 0.86703 0.79579 0.79205 0.87889 0.89393 0.90846 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 7.66 59.85 0.46 4.33 16 2 N -0.59 -13.89 2.94 -171.39 -0.50 -14.39 16 3 C -0.26 -6.85 9.64 -15.06 -0.15 -6.99 16 4 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 5 C 0.00 0.12 5.14 -17.43 -0.09 0.03 16 6 N -0.91 -25.67 10.54 55.49 0.58 -25.08 16 7 Si 0.91 21.29 29.57 -169.99 -5.03 16.26 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.21 3.44 -66.10 -0.23 2.98 16 12 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 13 C -0.15 -2.32 6.65 -24.58 -0.16 -2.48 16 14 C 0.09 1.03 6.48 -2.50 -0.02 1.01 16 15 N -0.61 -8.48 3.30 -170.49 -0.56 -9.04 16 16 C 0.53 7.17 7.14 -10.99 -0.08 7.09 16 17 O -0.54 -9.42 15.86 5.56 0.09 -9.34 16 18 C -0.12 -1.02 2.89 -90.14 -0.26 -1.28 16 19 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 20 C -0.14 -1.27 5.47 -26.74 -0.15 -1.41 16 21 C 0.52 6.42 7.98 -10.86 -0.09 6.34 16 22 O -0.52 -8.04 15.64 5.53 0.09 -7.96 16 23 N -0.53 -5.95 3.16 -112.49 -0.36 -6.30 16 24 C 0.01 0.16 6.80 -83.89 -0.57 -0.41 16 25 C 0.05 0.48 11.53 -17.22 -0.20 0.28 16 26 N -0.28 -3.17 12.69 30.70 0.39 -2.78 16 27 N -0.47 -4.54 7.40 30.69 0.23 -4.31 16 28 H 0.44 2.70 8.96 -182.62 -1.64 1.07 16 29 C 0.04 0.46 11.18 -16.68 -0.19 0.27 16 30 C 0.12 0.98 6.26 -3.12 -0.02 0.96 16 31 C 0.09 1.49 6.39 -3.06 -0.02 1.47 16 32 H 0.03 0.83 7.38 -51.93 -0.38 0.45 16 33 H 0.05 1.20 7.21 -51.93 -0.37 0.83 16 34 H 0.00 0.00 6.26 -51.93 -0.33 -0.33 16 35 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.31 7.28 -51.93 -0.38 0.93 16 38 H 0.07 0.63 8.14 -51.94 -0.42 0.21 16 39 H 0.07 0.63 5.48 -51.93 -0.28 0.34 16 40 H 0.12 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.11 1.16 6.25 -51.93 -0.32 0.83 16 42 H 0.19 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.19 2.11 6.51 -52.49 -0.34 1.77 16 44 H 0.10 0.98 7.01 -51.93 -0.36 0.62 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 1.47 6.11 -51.93 -0.32 1.16 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -35.32 376.46 -8.80 -44.11 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.65 Total: 0.99 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -1.75 Total: 12.18 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.22 Total: -61.91 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.32 -8.80 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971526019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.769 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds