Wall clock time and date at job start Wed Apr 1 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 120.00304 * 2 1 4 4 H 1.07997 * 120.00389 * 201.91979 * 3 2 1 5 5 C 1.38819 * 119.99812 * 21.90857 * 3 2 1 6 6 N 1.31613 * 119.99916 * 11.05375 * 5 3 2 7 7 Si 1.86800 * 119.99782 * 191.04919 * 5 3 2 8 8 H 1.48492 * 109.47324 * 60.00281 * 7 5 3 9 9 H 1.48501 * 109.46988 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47257 * 300.00205 * 7 5 3 11 11 C 1.46497 * 119.99794 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.78284 * 178.21594 * 11 2 1 13 13 C 1.55159 * 110.72382 * 301.45603 * 11 2 1 14 14 C 1.54905 * 101.61946 * 153.84913 * 13 11 2 15 15 N 1.47474 * 104.80892 * 323.03939 * 14 13 11 16 16 C 1.34777 * 125.62794 * 204.14525 * 15 14 13 17 17 O 1.21281 * 120.00021 * 179.91532 * 16 15 14 18 18 C 1.50700 * 120.00192 * 359.91788 * 16 15 14 19 19 H 1.09004 * 110.85371 * 303.78903 * 18 16 15 20 20 C 1.54626 * 110.96841 * 67.61944 * 18 16 15 21 21 C 1.51281 * 104.19362 * 93.32361 * 20 18 16 22 22 O 1.21310 * 124.93979 * 196.21207 * 21 20 18 23 23 N 1.34414 * 110.11676 * 16.25023 * 21 20 18 24 24 C 1.40768 * 124.35098 * 180.42779 * 23 21 20 25 25 C 1.40243 * 126.08108 * 179.66832 * 24 23 21 26 26 N 1.30833 * 108.33698 * 179.82005 * 25 24 23 27 27 N 1.40071 * 108.36531 * 0.43610 * 26 25 24 28 28 H 0.97003 * 126.05297 * 179.69726 * 27 26 25 29 29 C 1.35751 * 126.07527 * 359.97438 * 24 23 21 30 30 C 1.46759 * 111.30204 * 0.41101 * 23 21 20 31 31 C 1.47023 * 108.72080 * 24.07427 * 15 14 13 32 32 H 1.08998 * 109.47322 * 275.09127 * 1 2 3 33 33 H 1.09000 * 109.46826 * 35.08830 * 1 2 3 34 34 H 1.09001 * 109.47415 * 155.08985 * 1 2 3 35 35 H 0.97002 * 119.99856 * 179.97438 * 6 5 3 36 36 H 1.09006 * 111.00100 * 271.94521 * 13 11 2 37 37 H 1.08999 * 111.00211 * 35.74609 * 13 11 2 38 38 H 1.08989 * 110.37136 * 81.84877 * 14 13 11 39 39 H 1.09006 * 110.36236 * 204.17287 * 14 13 11 40 40 H 1.09009 * 110.48561 * 211.99852 * 20 18 16 41 41 H 1.08996 * 110.49191 * 334.64209 * 20 18 16 42 42 H 1.08003 * 125.83530 * 359.97438 * 25 24 23 43 43 H 1.08001 * 126.22710 * 359.95785 * 29 24 23 44 44 H 1.09004 * 110.24461 * 223.98285 * 30 23 21 45 45 H 1.09001 * 110.32264 * 102.02043 * 30 23 21 46 46 H 1.08998 * 109.88099 * 239.55718 * 31 15 14 47 47 H 1.08999 * 110.00990 * 118.46586 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1712 1.2197 -0.3491 5 6 1.5309 2.3446 0.4486 6 7 0.3743 2.2737 1.0727 7 14 2.3397 4.0046 0.1665 8 1 2.5109 4.2306 -1.2911 9 1 1.4836 5.0757 0.7368 10 1 3.6680 4.0273 0.8302 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0944 -0.0312 13 6 1.8161 -2.1223 1.2389 14 6 2.1001 -3.5570 0.7283 15 7 1.6924 -3.5403 -0.6888 16 6 1.3238 -4.6160 -1.4124 17 8 1.0051 -4.4844 -2.5752 18 6 1.3075 -5.9822 -0.7766 19 1 2.2836 -6.2270 -0.3577 20 6 0.2022 -6.0781 0.3005 21 6 -0.9898 -6.6427 -0.4404 22 8 -2.1341 -6.6155 -0.0386 23 7 -0.5964 -7.1795 -1.6082 24 6 -1.4650 -7.7809 -2.5385 25 6 -1.0957 -8.3454 -3.7681 26 7 -2.1732 -8.8068 -4.3493 27 7 -3.2697 -8.5452 -3.5178 28 1 -4.1938 -8.7750 -3.7024 29 6 -2.8097 -7.9125 -2.4075 30 6 0.8549 -7.0578 -1.7889 31 6 1.7531 -2.1563 -1.1811 32 1 -0.3634 0.0912 1.0236 33 1 -0.3633 0.8409 -0.5907 34 1 -0.3634 -0.9321 -0.4328 35 1 -0.0580 3.0834 1.3865 36 1 2.4498 -1.8784 2.0916 37 1 0.7627 -1.9981 1.4896 38 1 3.1619 -3.7871 0.8146 39 1 1.5073 -4.2822 1.2858 40 1 0.5075 -6.7516 1.1015 41 1 -0.0290 -5.0903 0.6989 42 1 -0.0928 -8.3934 -4.1660 43 1 -3.4056 -7.5759 -1.5720 44 1 1.0828 -6.7383 -2.8059 45 1 1.3442 -8.0078 -1.5740 46 1 0.7689 -1.8435 -1.5300 47 1 2.4756 -2.0808 -1.9937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971526019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:36 Heat of formation + Delta-G solvation = 30.091292 kcal Electronic energy + Delta-G solvation = -30978.849572 eV Core-core repulsion = 26777.767305 eV Total energy + Delta-G solvation = -4201.082267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.61742 -41.63884 -40.45291 -38.92693 -37.34398 -36.55046 -34.30524 -33.28996 -32.34278 -31.27373 -30.00768 -29.04070 -28.79937 -28.09238 -25.81075 -24.24615 -23.71405 -23.38646 -22.16093 -20.84950 -20.46188 -20.16561 -19.16784 -18.94075 -18.47622 -17.57536 -17.37865 -16.92983 -16.50410 -16.38704 -15.94852 -15.74209 -15.50898 -15.43281 -15.09349 -14.84747 -14.84200 -14.44449 -14.21354 -14.09628 -13.87116 -13.76939 -13.43849 -13.12713 -12.97776 -12.80456 -12.78309 -12.52229 -12.48645 -12.37350 -12.21882 -12.08902 -12.06619 -11.80897 -11.45341 -11.39624 -10.97027 -10.84681 -10.73080 -10.62649 -9.60935 -8.82066 -8.76361 -7.83006 -5.31454 0.70574 1.18406 1.47883 1.50876 1.55843 1.56710 1.58892 1.94134 2.03233 2.20735 2.51845 3.18406 3.26710 3.30339 3.44403 3.60541 3.76219 3.88807 3.90757 3.94504 4.06596 4.31016 4.36824 4.39941 4.45234 4.51258 4.52585 4.57463 4.66622 4.71926 4.73414 4.83075 4.88704 4.97408 5.05310 5.08474 5.19289 5.30114 5.36968 5.44258 5.63811 5.69345 5.75137 5.99881 6.25421 6.31053 6.55980 6.59618 7.02629 7.11734 7.14945 7.84356 8.28909 9.20562 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002330 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.972565 B =12016.423312 C =12259.393802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.604 5.604 3 C -0.264 4.264 4 H 0.078 0.922 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.298 1.298 10 H -0.270 1.270 11 C 0.165 3.835 12 H 0.087 0.913 13 C -0.147 4.147 14 C 0.102 3.898 15 N -0.609 5.609 16 C 0.521 3.479 17 O -0.585 6.585 18 C -0.104 4.104 19 H 0.184 0.816 20 C -0.135 4.135 21 C 0.498 3.502 22 O -0.567 6.567 23 N -0.531 5.531 24 C -0.009 4.009 25 C 0.046 3.954 26 N -0.300 5.300 27 N -0.465 5.465 28 H 0.457 0.543 29 C 0.033 3.967 30 C 0.112 3.888 31 C 0.098 3.902 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.247 0.753 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.168 0.832 41 H 0.103 0.897 42 H 0.212 0.788 43 H 0.186 0.814 44 H 0.089 0.911 45 H 0.135 0.865 46 H 0.036 0.964 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -25.743 -0.912 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.326 5.326 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.798 3.202 8 H -0.209 1.209 9 H -0.224 1.224 10 H -0.196 1.196 11 C 0.056 3.944 12 H 0.105 0.895 13 C -0.187 4.187 14 C -0.019 4.019 15 N -0.341 5.341 16 C 0.311 3.689 17 O -0.465 6.465 18 C -0.125 4.125 19 H 0.201 0.799 20 C -0.174 4.174 21 C 0.288 3.712 22 O -0.446 6.446 23 N -0.256 5.256 24 C -0.112 4.112 25 C -0.142 4.142 26 N -0.123 5.123 27 N -0.178 5.178 28 H 0.304 0.696 29 C -0.116 4.116 30 C -0.009 4.009 31 C -0.027 4.027 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.185 0.815 41 H 0.121 0.879 42 H 0.229 0.771 43 H 0.203 0.797 44 H 0.108 0.892 45 H 0.152 0.848 46 H 0.055 0.945 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.756 -26.164 -2.333 26.412 hybrid contribution -0.570 2.113 0.280 2.206 sum 2.185 -24.051 -2.054 24.237 Atomic orbital electron populations 1.20404 0.83237 0.94861 0.97537 1.44032 1.01714 1.01333 1.85502 1.19562 0.98000 0.86316 1.35538 0.90455 1.25785 0.98304 1.01856 0.98857 1.70229 1.18771 1.27454 1.42110 0.85299 0.77832 0.79393 0.77649 1.20878 1.22417 1.19554 1.21513 0.96143 0.84498 0.92200 0.89496 1.23243 1.01677 0.94680 0.99075 1.22716 1.02563 0.97476 0.79131 1.48536 1.65538 1.06322 1.13751 1.20790 0.75916 0.86504 0.85700 1.90712 1.50220 1.86482 1.19111 1.22418 1.04258 0.89718 0.96127 0.79892 1.22492 0.91073 1.05162 0.98707 1.21636 0.90617 0.77372 0.81581 1.90650 1.22898 1.59623 1.71450 1.45295 1.08752 1.54556 1.17029 1.17874 0.89972 1.09110 0.94257 1.24071 0.99794 0.98355 0.91967 1.77215 0.93567 1.23892 1.17606 1.46165 1.10071 1.47485 1.14126 0.69584 1.22592 0.94846 1.00438 0.93732 1.22414 0.77021 1.00135 1.01360 1.22343 1.00118 0.81853 0.98427 0.97250 0.96975 0.96607 0.94348 0.89169 0.93007 0.87448 0.87464 0.81490 0.87894 0.77102 0.79705 0.89244 0.84758 0.94510 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.29 7.66 127.77 0.98 10.27 16 2 N -0.60 -29.14 2.94 -696.15 -2.05 -31.18 16 3 C -0.26 -13.98 9.64 84.04 0.81 -13.17 16 4 H 0.08 3.89 7.82 -2.91 -0.02 3.86 16 5 C -0.05 -2.91 5.14 84.86 0.44 -2.48 16 6 N -0.94 -55.01 10.54 21.65 0.23 -54.78 16 7 Si 0.97 44.33 29.57 68.60 2.03 46.36 16 8 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 9 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 C 0.16 5.97 3.44 46.18 0.16 6.13 16 12 H 0.09 3.00 7.93 -2.39 -0.02 2.98 16 13 C -0.15 -4.16 6.65 31.99 0.21 -3.95 16 14 C 0.10 1.82 6.48 86.84 0.56 2.38 16 15 N -0.61 -15.47 3.30 -811.68 -2.68 -18.16 16 16 C 0.52 12.82 7.14 87.66 0.63 13.44 16 17 O -0.58 -20.20 15.86 -3.03 -0.05 -20.25 16 18 C -0.10 -1.26 2.89 -10.48 -0.03 -1.29 16 19 H 0.18 0.31 8.14 -2.39 -0.02 0.29 16 20 C -0.13 -1.80 5.47 30.59 0.17 -1.63 16 21 C 0.50 11.54 7.98 87.90 0.70 12.25 16 22 O -0.57 -17.48 15.64 -3.12 -0.05 -17.53 16 23 N -0.53 -10.92 3.16 -628.37 -1.99 -12.90 16 24 C -0.01 -0.21 6.80 37.62 0.26 0.04 16 25 C 0.05 0.92 11.53 85.33 0.98 1.91 16 26 N -0.30 -6.58 12.69 -56.78 -0.72 -7.30 16 27 N -0.46 -8.81 7.40 -56.81 -0.42 -9.23 16 28 H 0.46 5.52 8.96 -213.34 -1.91 3.61 16 29 C 0.03 0.74 11.18 83.50 0.93 1.68 16 30 C 0.11 1.44 6.26 86.83 0.54 1.98 16 31 C 0.10 3.37 6.39 86.73 0.55 3.93 16 32 H 0.01 0.50 7.38 -2.39 -0.02 0.49 16 33 H 0.01 0.65 7.21 -2.39 -0.02 0.63 16 34 H 0.02 0.72 6.26 -2.39 -0.01 0.70 16 35 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.05 1.74 7.28 -2.39 -0.02 1.72 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.25 5.48 -2.38 -0.01 1.23 16 40 H 0.17 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.10 1.71 6.25 -2.39 -0.01 1.69 16 42 H 0.21 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.19 4.32 6.51 -2.91 -0.02 4.31 16 44 H 0.09 1.47 7.01 -2.38 -0.02 1.45 16 45 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.04 1.53 6.11 -2.39 -0.01 1.51 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -83.42 376.46 1.31 -82.11 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -0.89 Total: 11.37 kcal Atomic # 6 Polarization: 23.60 SS G_CDS: 7.89 Total: 31.49 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -7.63 Total: -133.55 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.10 Total: -37.78 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -83.42 1.31 -82.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971526019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.201 kcal (2) G-P(sol) polarization free energy of solvation -83.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds