Wall clock time and date at job start Wed Apr 1 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99434 * 2 1 4 4 H 1.08005 * 119.99339 * 201.70673 * 3 2 1 5 5 C 1.38808 * 120.00380 * 21.71807 * 3 2 1 6 6 N 1.31614 * 120.00024 * 13.67483 * 5 3 2 7 7 Si 1.86802 * 120.00102 * 193.67786 * 5 3 2 8 8 H 1.48504 * 109.47093 * 89.99719 * 7 5 3 9 9 H 1.48492 * 109.47033 * 209.99564 * 7 5 3 10 10 H 1.48504 * 109.47043 * 329.99878 * 7 5 3 11 11 C 1.46492 * 120.00195 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.64323 * 176.85966 * 11 2 1 13 13 C 1.55158 * 110.72222 * 53.51964 * 11 2 1 14 14 C 1.55133 * 101.48449 * 205.97299 * 13 11 2 15 15 N 1.47424 * 104.72635 * 37.29479 * 14 13 11 16 16 C 1.34771 * 125.64946 * 155.82062 * 15 14 13 17 17 O 1.21282 * 120.00276 * 179.69624 * 16 15 14 18 18 C 1.50701 * 119.99871 * 359.68901 * 16 15 14 19 19 H 1.08998 * 110.85715 * 56.21473 * 18 16 15 20 20 C 1.54782 * 111.16904 * 292.40632 * 18 16 15 21 21 C 1.51280 * 104.12623 * 266.93413 * 20 18 16 22 22 O 1.21296 * 124.94443 * 163.67572 * 21 20 18 23 23 N 1.34425 * 110.10944 * 343.40976 * 21 20 18 24 24 C 1.40768 * 124.34495 * 179.79751 * 23 21 20 25 25 C 1.40254 * 126.07764 * 179.71531 * 24 23 21 26 26 N 1.30830 * 108.33007 * 179.85583 * 25 24 23 27 27 N 1.40066 * 108.37247 * 0.40413 * 26 25 24 28 28 H 0.97003 * 126.05261 * 179.77210 * 27 26 25 29 29 C 1.35756 * 126.08075 * 0.02640 * 24 23 21 30 30 C 1.46763 * 111.30283 * 359.82255 * 23 21 20 31 31 C 1.47030 * 108.70122 * 335.55429 * 15 14 13 32 32 H 1.09000 * 109.47367 * 274.46713 * 1 2 3 33 33 H 1.09003 * 109.47039 * 34.46922 * 1 2 3 34 34 H 1.09001 * 109.47307 * 154.47046 * 1 2 3 35 35 H 0.97001 * 120.00547 * 180.02562 * 6 5 3 36 36 H 1.08995 * 111.00229 * 324.20763 * 13 11 2 37 37 H 1.09001 * 110.99961 * 88.02510 * 13 11 2 38 38 H 1.09003 * 110.49241 * 278.44834 * 14 13 11 39 39 H 1.09000 * 110.34024 * 156.06262 * 14 13 11 40 40 H 1.09000 * 110.61185 * 148.23434 * 20 18 16 41 41 H 1.09004 * 110.43013 * 25.54564 * 20 18 16 42 42 H 1.07996 * 125.83325 * 0.02562 * 25 24 23 43 43 H 1.07998 * 126.21827 * 0.02562 * 29 24 23 44 44 H 1.09000 * 110.24265 * 136.01514 * 30 23 21 45 45 H 1.09006 * 110.24166 * 258.01354 * 30 23 21 46 46 H 1.08991 * 109.88169 * 120.70249 * 31 15 14 47 47 H 1.09000 * 109.87706 * 241.71668 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1722 1.2192 -0.3460 5 6 1.5294 2.3454 0.4448 6 7 0.3967 2.2718 1.1110 7 14 2.3024 4.0103 0.0979 8 1 1.7948 4.5316 -1.1966 9 1 1.9482 4.9568 1.1858 10 1 3.7788 3.8657 0.0286 11 6 2.1975 -1.2686 -0.0006 12 1 3.2717 -1.0921 -0.0564 13 6 1.7248 -2.1750 -1.1678 14 6 2.0553 -3.5867 -0.6161 15 7 1.7502 -3.5071 0.8241 16 6 1.4408 -4.5495 1.6202 17 8 1.2123 -4.3669 2.7972 18 6 1.3785 -5.9423 1.0479 19 1 2.3199 -6.2063 0.5661 20 6 0.1943 -6.0890 0.0621 21 6 -0.9365 -6.6140 0.9190 22 8 -2.1083 -6.6030 0.6059 23 7 -0.4530 -7.0998 2.0754 24 6 -1.2460 -7.6588 3.0953 25 6 -0.7806 -8.1804 4.3112 26 7 -1.8103 -8.6043 4.9980 27 7 -2.9681 -8.3778 4.2431 28 1 -3.8748 -8.5981 4.5083 29 6 -2.5967 -7.7943 3.0743 30 6 1.0077 -6.9718 2.1382 31 6 1.8455 -2.1028 1.2492 32 1 -0.3634 0.0800 1.0245 33 1 -0.3633 0.8473 -0.5816 34 1 -0.3634 -0.9273 -0.4429 35 1 -0.0369 3.0820 1.4215 36 1 0.6551 -2.0608 -1.3426 37 1 2.2912 -1.9693 -2.0761 38 1 3.1094 -3.8188 -0.7683 39 1 1.4276 -4.3376 -1.0959 40 1 0.4376 -6.8010 -0.7266 41 1 -0.0680 -5.1208 -0.3644 42 1 0.2511 -8.2222 4.6277 43 1 -3.2558 -7.4936 2.2734 44 1 1.3125 -6.6084 3.1196 45 1 1.4797 -7.9314 1.9271 46 1 0.8902 -1.7735 1.6577 47 1 2.6270 -1.9956 2.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971526020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:42 Heat of formation + Delta-G solvation = 55.626018 kcal Electronic energy + Delta-G solvation = -31008.694770 eV Core-core repulsion = 26808.719772 eV Total energy + Delta-G solvation = -4199.974998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.77771 -40.70894 -39.35529 -37.62128 -36.36229 -34.89247 -33.39269 -31.65970 -31.48150 -29.80746 -29.02668 -28.07341 -27.79558 -26.08160 -24.56109 -23.02842 -22.57471 -22.39486 -21.33088 -19.59764 -19.31708 -19.13325 -18.33912 -17.52070 -17.08548 -16.52327 -16.17856 -15.76714 -15.46013 -15.04358 -14.91705 -14.70299 -14.65093 -14.11760 -13.97366 -13.66746 -13.43835 -13.32549 -13.00655 -12.95229 -12.73203 -12.50980 -12.20735 -12.02461 -11.90811 -11.70721 -11.55347 -11.22805 -10.96051 -10.85231 -10.61750 -10.59320 -10.48256 -10.31549 -10.06402 -9.92472 -9.89206 -9.85876 -9.70882 -8.60798 -8.40304 -7.91604 -6.87260 -5.79201 -3.26406 1.57187 2.04728 2.33165 2.62050 2.86511 2.95974 3.04513 3.35132 3.41294 3.43118 3.91985 3.99227 4.29019 4.43436 4.49457 4.65057 4.75019 4.89993 4.94341 5.08129 5.18090 5.19872 5.26079 5.28783 5.37818 5.39174 5.43130 5.51859 5.55841 5.73131 5.83257 5.85282 5.93312 6.27815 6.30452 6.44490 6.56794 6.60329 6.78946 6.79163 6.81566 6.99584 7.31508 7.36033 7.67970 7.69649 7.75274 7.89816 8.23220 8.31462 9.14843 9.77532 10.25618 11.25244 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002406 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.117410 B =11635.262032 C =12097.582778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.095 3.905 15 N -0.608 5.608 16 C 0.527 3.473 17 O -0.534 6.534 18 C -0.121 4.121 19 H 0.128 0.872 20 C -0.143 4.143 21 C 0.517 3.483 22 O -0.523 6.523 23 N -0.529 5.529 24 C 0.013 3.987 25 C 0.045 3.955 26 N -0.280 5.280 27 N -0.474 5.474 28 H 0.445 0.555 29 C 0.041 3.959 30 C 0.117 3.883 31 C 0.086 3.914 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.002 0.998 35 H 0.254 0.746 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.187 0.813 43 H 0.191 0.809 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 -23.179 -2.339 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.028 4.028 15 N -0.342 5.342 16 C 0.314 3.686 17 O -0.412 6.412 18 C -0.143 4.143 19 H 0.145 0.855 20 C -0.184 4.184 21 C 0.305 3.695 22 O -0.399 6.399 23 N -0.255 5.255 24 C -0.089 4.089 25 C -0.143 4.143 26 N -0.102 5.102 27 N -0.186 5.186 28 H 0.289 0.711 29 C -0.107 4.107 30 C -0.006 4.006 31 C -0.038 4.038 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.204 0.796 43 H 0.208 0.792 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.075 -23.467 -0.659 23.476 hybrid contribution 0.256 1.351 -0.723 1.553 sum 0.181 -22.116 -1.383 22.160 Atomic orbital electron populations 1.20814 0.82365 0.95771 0.99522 1.43940 1.01926 0.99919 1.84774 1.19228 0.97887 0.84951 1.37146 0.91079 1.25047 0.97802 0.98648 0.97963 1.70083 1.18800 1.27241 1.38583 0.86215 0.78712 0.83874 0.77459 1.21425 1.21738 1.20425 1.21352 0.96408 0.85962 0.90025 0.90294 1.23397 1.02950 0.93099 1.00005 1.22521 1.00294 0.99411 0.80615 1.48517 1.67588 1.07975 1.10077 1.19758 0.77479 0.85308 0.86067 1.90735 1.49525 1.84911 1.15981 1.22329 1.01184 0.93722 0.97058 0.85459 1.22429 0.92863 1.05103 0.97969 1.20843 0.89680 0.77257 0.81708 1.90672 1.17923 1.56677 1.74617 1.45067 1.07441 1.57551 1.15426 1.17553 0.90007 1.09277 0.92084 1.23669 0.99360 0.99685 0.91633 1.77255 0.91016 1.23389 1.18578 1.46124 1.08962 1.50051 1.13475 0.71065 1.22529 0.95507 1.00761 0.91930 1.22107 0.78573 0.98409 1.01519 1.22996 1.02420 0.78309 1.00107 0.95177 0.93577 0.97931 0.93567 0.90273 0.90270 0.91254 0.90999 0.86168 0.86783 0.79576 0.79216 0.87865 0.89413 0.90916 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.81 7.82 59.85 0.47 4.28 16 2 N -0.59 -13.83 2.93 -171.38 -0.50 -14.33 16 3 C -0.26 -6.88 9.63 -15.06 -0.14 -7.03 16 4 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 5 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 6 N -0.90 -25.94 10.68 55.49 0.59 -25.34 16 7 Si 0.91 21.32 29.58 -169.99 -5.03 16.29 16 8 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.17 3.20 3.44 -66.10 -0.23 2.97 16 12 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 13 C -0.15 -2.19 6.60 -24.46 -0.16 -2.35 16 14 C 0.09 1.03 6.49 -2.41 -0.02 1.01 16 15 N -0.61 -8.73 3.30 -170.37 -0.56 -9.29 16 16 C 0.53 7.42 7.15 -10.99 -0.08 7.34 16 17 O -0.53 -9.83 15.86 5.56 0.09 -9.74 16 18 C -0.12 -1.05 2.88 -90.06 -0.26 -1.31 16 19 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 20 C -0.14 -1.26 5.49 -26.66 -0.15 -1.41 16 21 C 0.52 6.49 7.97 -10.86 -0.09 6.40 16 22 O -0.52 -8.09 15.64 5.54 0.09 -8.00 16 23 N -0.53 -6.08 3.16 -112.48 -0.36 -6.44 16 24 C 0.01 0.16 6.80 -83.88 -0.57 -0.41 16 25 C 0.05 0.49 11.53 -17.22 -0.20 0.29 16 26 N -0.28 -3.26 12.69 30.70 0.39 -2.87 16 27 N -0.47 -4.66 7.40 30.69 0.23 -4.43 16 28 H 0.44 2.81 8.96 -182.62 -1.64 1.17 16 29 C 0.04 0.47 11.18 -16.68 -0.19 0.28 16 30 C 0.12 1.01 6.25 -3.12 -0.02 0.99 16 31 C 0.09 1.58 6.51 -3.06 -0.02 1.56 16 32 H 0.03 0.80 7.33 -51.93 -0.38 0.42 16 33 H 0.05 1.19 7.23 -51.93 -0.38 0.81 16 34 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.08 1.23 6.05 -51.93 -0.31 0.92 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 5.50 -51.93 -0.29 0.31 16 40 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 1.13 6.29 -51.93 -0.33 0.81 16 42 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.19 2.15 6.51 -52.49 -0.34 1.81 16 44 H 0.10 1.03 7.01 -51.93 -0.36 0.66 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 1.59 7.11 -51.93 -0.37 1.23 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -35.84 376.33 -8.75 -44.59 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.62 Total: 1.24 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -1.74 Total: 12.65 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.21 Total: -62.69 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.84 -8.75 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971526020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.219 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds