Wall clock time and date at job start Wed Apr 1 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99434 * 2 1 4 4 H 1.08005 * 119.99339 * 201.70673 * 3 2 1 5 5 C 1.38808 * 120.00380 * 21.71807 * 3 2 1 6 6 N 1.31614 * 120.00024 * 13.67483 * 5 3 2 7 7 Si 1.86802 * 120.00102 * 193.67786 * 5 3 2 8 8 H 1.48504 * 109.47093 * 89.99719 * 7 5 3 9 9 H 1.48492 * 109.47033 * 209.99564 * 7 5 3 10 10 H 1.48504 * 109.47043 * 329.99878 * 7 5 3 11 11 C 1.46492 * 120.00195 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.64323 * 176.85966 * 11 2 1 13 13 C 1.55158 * 110.72222 * 53.51964 * 11 2 1 14 14 C 1.55133 * 101.48449 * 205.97299 * 13 11 2 15 15 N 1.47424 * 104.72635 * 37.29479 * 14 13 11 16 16 C 1.34771 * 125.64946 * 155.82062 * 15 14 13 17 17 O 1.21282 * 120.00276 * 179.69624 * 16 15 14 18 18 C 1.50701 * 119.99871 * 359.68901 * 16 15 14 19 19 H 1.08998 * 110.85715 * 56.21473 * 18 16 15 20 20 C 1.54782 * 111.16904 * 292.40632 * 18 16 15 21 21 C 1.51280 * 104.12623 * 266.93413 * 20 18 16 22 22 O 1.21296 * 124.94443 * 163.67572 * 21 20 18 23 23 N 1.34425 * 110.10944 * 343.40976 * 21 20 18 24 24 C 1.40768 * 124.34495 * 179.79751 * 23 21 20 25 25 C 1.40254 * 126.07764 * 179.71531 * 24 23 21 26 26 N 1.30830 * 108.33007 * 179.85583 * 25 24 23 27 27 N 1.40066 * 108.37247 * 0.40413 * 26 25 24 28 28 H 0.97003 * 126.05261 * 179.77210 * 27 26 25 29 29 C 1.35756 * 126.08075 * 0.02640 * 24 23 21 30 30 C 1.46763 * 111.30283 * 359.82255 * 23 21 20 31 31 C 1.47030 * 108.70122 * 335.55429 * 15 14 13 32 32 H 1.09000 * 109.47367 * 274.46713 * 1 2 3 33 33 H 1.09003 * 109.47039 * 34.46922 * 1 2 3 34 34 H 1.09001 * 109.47307 * 154.47046 * 1 2 3 35 35 H 0.97001 * 120.00547 * 180.02562 * 6 5 3 36 36 H 1.08995 * 111.00229 * 324.20763 * 13 11 2 37 37 H 1.09001 * 110.99961 * 88.02510 * 13 11 2 38 38 H 1.09003 * 110.49241 * 278.44834 * 14 13 11 39 39 H 1.09000 * 110.34024 * 156.06262 * 14 13 11 40 40 H 1.09000 * 110.61185 * 148.23434 * 20 18 16 41 41 H 1.09004 * 110.43013 * 25.54564 * 20 18 16 42 42 H 1.07996 * 125.83325 * 0.02562 * 25 24 23 43 43 H 1.07998 * 126.21827 * 0.02562 * 29 24 23 44 44 H 1.09000 * 110.24265 * 136.01514 * 30 23 21 45 45 H 1.09006 * 110.24166 * 258.01354 * 30 23 21 46 46 H 1.08991 * 109.88169 * 120.70249 * 31 15 14 47 47 H 1.09000 * 109.87706 * 241.71668 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1722 1.2192 -0.3460 5 6 1.5294 2.3454 0.4448 6 7 0.3967 2.2718 1.1110 7 14 2.3024 4.0103 0.0979 8 1 1.7948 4.5316 -1.1966 9 1 1.9482 4.9568 1.1858 10 1 3.7788 3.8657 0.0286 11 6 2.1975 -1.2686 -0.0006 12 1 3.2717 -1.0921 -0.0564 13 6 1.7248 -2.1750 -1.1678 14 6 2.0553 -3.5867 -0.6161 15 7 1.7502 -3.5071 0.8241 16 6 1.4408 -4.5495 1.6202 17 8 1.2123 -4.3669 2.7972 18 6 1.3785 -5.9423 1.0479 19 1 2.3199 -6.2063 0.5661 20 6 0.1943 -6.0890 0.0621 21 6 -0.9365 -6.6140 0.9190 22 8 -2.1083 -6.6030 0.6059 23 7 -0.4530 -7.0998 2.0754 24 6 -1.2460 -7.6588 3.0953 25 6 -0.7806 -8.1804 4.3112 26 7 -1.8103 -8.6043 4.9980 27 7 -2.9681 -8.3778 4.2431 28 1 -3.8748 -8.5981 4.5083 29 6 -2.5967 -7.7943 3.0743 30 6 1.0077 -6.9718 2.1382 31 6 1.8455 -2.1028 1.2492 32 1 -0.3634 0.0800 1.0245 33 1 -0.3633 0.8473 -0.5816 34 1 -0.3634 -0.9273 -0.4429 35 1 -0.0369 3.0820 1.4215 36 1 0.6551 -2.0608 -1.3426 37 1 2.2912 -1.9693 -2.0761 38 1 3.1094 -3.8188 -0.7683 39 1 1.4276 -4.3376 -1.0959 40 1 0.4376 -6.8010 -0.7266 41 1 -0.0680 -5.1208 -0.3644 42 1 0.2511 -8.2222 4.6277 43 1 -3.2558 -7.4936 2.2734 44 1 1.3125 -6.6084 3.1196 45 1 1.4797 -7.9314 1.9271 46 1 0.8902 -1.7735 1.6577 47 1 2.6270 -1.9956 2.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971526020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:41 Heat of formation + Delta-G solvation = 29.079874 kcal Electronic energy + Delta-G solvation = -31009.845897 eV Core-core repulsion = 26808.719772 eV Total energy + Delta-G solvation = -4201.126125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.61710 -41.63384 -40.44474 -38.92810 -37.34462 -36.54967 -34.29995 -33.31697 -32.35035 -31.21581 -30.01647 -29.07074 -28.79680 -28.07718 -25.80597 -24.26503 -23.72646 -23.39497 -22.16399 -20.84326 -20.46327 -20.15067 -19.17124 -18.94328 -18.46575 -17.52351 -17.37238 -16.92937 -16.58708 -16.38727 -15.95674 -15.75808 -15.51425 -15.42689 -15.07504 -14.86808 -14.85291 -14.45404 -14.16482 -14.07131 -13.80183 -13.74852 -13.46420 -13.20481 -13.14500 -12.77964 -12.74214 -12.50546 -12.48968 -12.38225 -12.18313 -12.09133 -12.06701 -11.78608 -11.42091 -11.36364 -10.96834 -10.84152 -10.73743 -10.63739 -9.61209 -8.83783 -8.76637 -7.83943 -5.33094 0.70193 1.18389 1.48029 1.48731 1.55870 1.57854 1.58924 1.95269 2.03346 2.20429 2.51377 3.18617 3.26120 3.28954 3.45446 3.61017 3.76212 3.88349 3.89474 3.94567 4.08563 4.31478 4.37660 4.41896 4.44625 4.50823 4.51710 4.57526 4.66514 4.72816 4.77589 4.82455 4.88854 4.96921 5.07160 5.08906 5.20890 5.26711 5.35191 5.47924 5.64247 5.68631 5.74583 6.00106 6.25001 6.30234 6.55454 6.61423 7.02658 7.11160 7.15564 7.83977 8.28211 9.19383 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002406 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.117410 B =11635.262032 C =12097.582778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.602 5.602 3 C -0.262 4.262 4 H 0.083 0.917 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.972 3.028 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.263 1.263 11 C 0.164 3.836 12 H 0.087 0.913 13 C -0.144 4.144 14 C 0.100 3.900 15 N -0.609 5.609 16 C 0.518 3.482 17 O -0.589 6.589 18 C -0.103 4.103 19 H 0.185 0.815 20 C -0.133 4.133 21 C 0.497 3.503 22 O -0.567 6.567 23 N -0.532 5.532 24 C -0.010 4.010 25 C 0.045 3.955 26 N -0.300 5.300 27 N -0.464 5.464 28 H 0.457 0.543 29 C 0.033 3.967 30 C 0.111 3.889 31 C 0.098 3.902 32 H -0.010 1.010 33 H 0.019 0.981 34 H 0.032 0.968 35 H 0.246 0.754 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.170 0.830 41 H 0.105 0.895 42 H 0.212 0.788 43 H 0.187 0.813 44 H 0.086 0.914 45 H 0.136 0.864 46 H 0.024 0.976 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -25.923 -4.830 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.392 4.392 4 H 0.100 0.900 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.800 3.200 8 H -0.212 1.212 9 H -0.229 1.229 10 H -0.187 1.187 11 C 0.055 3.945 12 H 0.105 0.895 13 C -0.184 4.184 14 C -0.021 4.021 15 N -0.342 5.342 16 C 0.308 3.692 17 O -0.470 6.470 18 C -0.124 4.124 19 H 0.202 0.798 20 C -0.172 4.172 21 C 0.287 3.713 22 O -0.446 6.446 23 N -0.257 5.257 24 C -0.113 4.113 25 C -0.143 4.143 26 N -0.123 5.123 27 N -0.178 5.178 28 H 0.304 0.696 29 C -0.116 4.116 30 C -0.010 4.010 31 C -0.028 4.028 32 H 0.008 0.992 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.188 0.812 41 H 0.123 0.877 42 H 0.228 0.772 43 H 0.204 0.796 44 H 0.105 0.895 45 H 0.154 0.846 46 H 0.043 0.957 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.774 -26.276 -3.178 26.612 hybrid contribution -0.621 2.135 0.119 2.227 sum 2.153 -24.141 -3.059 24.429 Atomic orbital electron populations 1.20425 0.83212 0.95949 0.96798 1.44141 1.01792 1.01357 1.85049 1.19667 0.98213 0.85993 1.35331 0.89960 1.25868 0.98599 1.02206 0.98602 1.70281 1.20609 1.27372 1.40660 0.85187 0.78634 0.79496 0.76643 1.21196 1.22908 1.18723 1.21620 0.96398 0.84563 0.91871 0.89531 1.23284 1.02112 0.93996 0.98983 1.22805 1.03450 0.98007 0.77826 1.48580 1.67643 1.06090 1.11854 1.20883 0.75718 0.87179 0.85429 1.90720 1.51557 1.86004 1.18695 1.22440 1.03782 0.89286 0.96926 0.79770 1.22526 0.90858 1.05641 0.98203 1.21675 0.90159 0.76998 0.82440 1.90644 1.19856 1.58434 1.75665 1.45315 1.08678 1.56812 1.14911 1.17888 0.90481 1.09942 0.92962 1.24067 1.00321 0.98849 0.91025 1.77208 0.91666 1.24154 1.19276 1.46160 1.09428 1.49427 1.12816 0.69572 1.22593 0.95783 1.00931 0.92274 1.22421 0.77060 1.00608 1.00919 1.22461 0.99148 0.81585 0.99576 0.99210 0.96248 0.94994 0.94465 0.91905 0.87876 0.87442 0.87118 0.81218 0.87698 0.77177 0.79626 0.89545 0.84648 0.95744 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 7.82 127.77 1.00 10.05 16 2 N -0.60 -28.92 2.93 -696.14 -2.04 -30.96 16 3 C -0.26 -13.84 9.63 84.03 0.81 -13.03 16 4 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 5 C -0.06 -3.22 5.08 84.86 0.43 -2.79 16 6 N -0.94 -56.79 10.68 21.65 0.23 -56.56 16 7 Si 0.97 44.59 29.58 68.60 2.03 46.62 16 8 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 9 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 C 0.16 5.90 3.44 46.18 0.16 6.06 16 12 H 0.09 2.98 7.92 -2.39 -0.02 2.96 16 13 C -0.14 -3.62 6.60 32.07 0.21 -3.40 16 14 C 0.10 1.65 6.49 86.93 0.56 2.22 16 15 N -0.61 -16.10 3.30 -811.33 -2.68 -18.78 16 16 C 0.52 13.50 7.15 87.66 0.63 14.12 16 17 O -0.59 -21.89 15.86 -3.04 -0.05 -21.94 16 18 C -0.10 -1.29 2.88 -10.43 -0.03 -1.32 16 19 H 0.19 0.32 8.14 -2.39 -0.02 0.30 16 20 C -0.13 -1.72 5.49 30.64 0.17 -1.55 16 21 C 0.50 11.61 7.97 87.90 0.70 12.31 16 22 O -0.57 -17.46 15.64 -3.08 -0.05 -17.51 16 23 N -0.53 -11.29 3.16 -628.36 -1.99 -13.28 16 24 C -0.01 -0.23 6.80 37.62 0.26 0.02 16 25 C 0.05 0.95 11.53 85.33 0.98 1.93 16 26 N -0.30 -6.84 12.69 -56.77 -0.72 -7.57 16 27 N -0.46 -9.14 7.40 -56.82 -0.42 -9.56 16 28 H 0.46 5.81 8.96 -213.34 -1.91 3.89 16 29 C 0.03 0.77 11.18 83.50 0.93 1.70 16 30 C 0.11 1.52 6.25 86.83 0.54 2.06 16 31 C 0.10 3.67 6.51 86.73 0.56 4.24 16 32 H -0.01 -0.60 7.33 -2.39 -0.02 -0.62 16 33 H 0.02 1.03 7.23 -2.39 -0.02 1.01 16 34 H 0.03 1.37 6.02 -2.39 -0.01 1.35 16 35 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.06 1.80 6.05 -2.39 -0.01 1.79 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.08 5.50 -2.39 -0.01 1.06 16 40 H 0.17 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 1.64 6.29 -2.39 -0.01 1.63 16 42 H 0.21 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.19 4.42 6.51 -2.91 -0.02 4.40 16 44 H 0.09 1.54 7.01 -2.39 -0.02 1.53 16 45 H 0.14 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.02 1.13 7.11 -2.39 -0.02 1.12 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -87.10 376.33 1.35 -85.75 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -0.89 Total: 11.15 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 7.92 Total: 32.63 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -7.62 Total: -136.70 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.10 Total: -39.45 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -87.10 1.35 -85.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971526020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.834 kcal (2) G-P(sol) polarization free energy of solvation -87.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds