Wall clock time and date at job start Wed Apr 1 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 119.99820 * 2 1 4 4 H 1.08000 * 119.99794 * 197.06126 * 3 2 1 5 5 C 1.38806 * 120.00126 * 17.06514 * 3 2 1 6 6 N 1.31614 * 120.00126 * 19.80101 * 5 3 2 7 7 Si 1.86802 * 119.99915 * 199.79947 * 5 3 2 8 8 H 1.48502 * 109.46862 * 94.99056 * 7 5 3 9 9 H 1.48500 * 109.47223 * 214.98353 * 7 5 3 10 10 H 1.48496 * 109.47550 * 334.98884 * 7 5 3 11 11 C 1.46496 * 119.99779 * 180.02562 * 2 1 3 12 12 H 1.09009 * 110.91703 * 176.09614 * 11 2 1 13 13 C 1.55159 * 111.00800 * 52.19682 * 11 2 1 14 14 C 1.54320 * 102.94298 * 206.42392 * 13 11 2 15 15 N 1.47023 * 107.27199 * 22.19096 * 14 13 11 16 16 C 1.34784 * 125.64776 * 181.08271 * 15 14 13 17 17 O 1.21277 * 120.00002 * 354.89387 * 16 15 14 18 18 C 1.50698 * 119.99655 * 174.89126 * 16 15 14 19 19 H 1.08991 * 109.51199 * 328.57543 * 18 16 15 20 20 C 1.53100 * 109.50483 * 88.66164 * 18 16 15 21 21 O 1.43013 * 109.26125 * 176.78109 * 20 18 16 22 22 C 1.43025 * 113.73647 * 301.32862 * 21 20 18 23 23 C 1.53096 * 109.25399 * 58.66977 * 22 21 20 24 24 N 1.47012 * 109.50613 * 208.48201 * 18 16 15 25 25 C 1.46900 * 110.99909 * 57.67800 * 24 18 16 26 26 C 1.53003 * 109.47513 * 175.77070 * 25 24 18 27 27 F 1.39898 * 109.46803 * 293.64890 * 26 25 24 28 28 F 1.39904 * 109.46714 * 53.64432 * 26 25 24 29 29 C 1.47425 * 108.70306 * 1.05924 * 15 14 13 30 30 H 1.08996 * 109.47043 * 275.52097 * 1 2 3 31 31 H 1.09002 * 109.47097 * 35.51972 * 1 2 3 32 32 H 1.08996 * 109.47528 * 155.52281 * 1 2 3 33 33 H 0.97006 * 120.00082 * 179.97438 * 6 5 3 34 34 H 1.08998 * 110.72001 * 88.06011 * 13 11 2 35 35 H 1.09000 * 110.86612 * 324.85676 * 13 11 2 36 36 H 1.09000 * 109.88492 * 262.77480 * 14 13 11 37 37 H 1.09000 * 110.01345 * 141.67949 * 14 13 11 38 38 H 1.09005 * 109.50682 * 296.71510 * 20 18 16 39 39 H 1.08997 * 109.50769 * 56.84422 * 20 18 16 40 40 H 1.09001 * 109.50448 * 178.60150 * 22 21 20 41 41 H 1.08993 * 109.50378 * 298.73688 * 22 21 20 42 42 H 1.09000 * 109.51281 * 63.08679 * 23 22 21 43 43 H 1.09006 * 109.50118 * 183.17512 * 23 22 21 44 44 H 1.09004 * 109.46992 * 295.76982 * 25 24 18 45 45 H 1.08998 * 109.47246 * 55.76502 * 25 24 18 46 46 H 1.08991 * 109.47026 * 173.64651 * 26 25 24 47 47 H 1.09000 * 110.36326 * 94.71440 * 29 15 14 48 48 H 1.08999 * 110.36501 * 217.03531 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1940 1.2065 -0.2744 5 6 1.5014 2.3616 0.3528 6 7 0.3840 2.3143 1.0465 7 14 2.2152 4.0108 -0.1571 8 1 1.5781 4.4560 -1.4225 9 1 1.9550 5.0131 0.9073 10 1 3.6797 3.8746 -0.3615 11 6 2.1974 -1.2687 -0.0006 12 1 3.2718 -1.0978 -0.0698 13 6 1.7066 -2.1938 -1.1454 14 6 2.0242 -3.6056 -0.6093 15 7 2.1175 -3.5058 0.8546 16 6 2.4020 -4.5208 1.6946 17 8 2.5156 -5.6494 1.2654 18 6 2.5790 -4.2531 3.1670 19 1 2.9911 -3.2540 3.3084 20 6 1.2231 -4.3512 3.8710 21 8 1.4077 -4.1707 5.2777 22 6 2.2948 -5.1242 5.8689 23 6 3.6615 -5.0339 5.1851 24 7 3.4969 -5.2483 3.7400 25 6 4.7947 -5.2250 3.0522 26 6 5.7550 -6.1963 3.7418 27 9 6.0410 -5.7331 5.0305 28 9 5.1616 -7.4607 3.8217 29 6 1.8489 -2.1116 1.2515 30 1 -0.3633 0.0989 1.0229 31 1 -0.3633 0.8364 -0.5971 32 1 -0.3634 -0.9352 -0.4258 33 1 -0.0689 3.1359 1.2933 34 1 2.2592 -1.9969 -2.0641 35 1 0.6354 -2.0751 -1.3083 36 1 2.9731 -3.9527 -1.0183 37 1 1.2274 -4.2969 -0.8836 38 1 0.5577 -3.5768 3.4890 39 1 0.7860 -5.3321 3.6842 40 1 2.4046 -4.9089 6.9318 41 1 1.8889 -6.1275 5.7401 42 1 4.0914 -4.0475 5.3594 43 1 4.3240 -5.7970 5.5938 44 1 4.6604 -5.5237 2.0126 45 1 5.2080 -4.2171 3.0902 46 1 6.6784 -6.2639 3.1668 47 1 0.7978 -1.9873 1.5120 48 1 2.4847 -1.8266 2.0897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972013545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:07 Heat of formation + Delta-G solvation = -122.358480 kcal Electronic energy + Delta-G solvation = -32894.825447 eV Core-core repulsion = 28236.443275 eV Total energy + Delta-G solvation = -4658.382172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -49.30335 -47.16855 -40.64101 -39.02434 -37.49837 -35.92260 -34.84109 -32.22910 -31.40449 -30.62188 -29.75669 -27.94140 -26.48575 -26.15734 -25.14716 -23.53009 -22.65978 -22.45766 -20.87809 -19.46334 -19.18116 -17.98299 -17.65909 -17.17859 -17.13958 -16.94875 -16.29536 -16.08507 -15.78166 -15.32770 -15.03667 -14.86765 -14.54046 -14.25396 -14.15158 -13.98536 -13.56841 -13.39899 -13.37388 -13.29022 -12.88610 -12.72807 -12.63789 -12.38445 -12.26522 -12.07388 -11.95088 -11.67513 -11.46551 -11.27825 -11.02101 -10.89696 -10.63498 -10.59544 -10.55549 -10.33488 -10.03930 -9.91913 -9.89224 -9.55140 -8.69447 -8.66686 -8.44313 -6.99009 -5.87624 -3.28352 2.55573 2.87865 3.31330 3.34687 3.39275 3.40130 3.54928 3.74055 3.94302 4.27774 4.34232 4.50410 4.59100 4.68079 4.78070 4.86490 5.00565 5.04831 5.08516 5.14169 5.19237 5.28902 5.37743 5.42178 5.46162 5.49427 5.52201 5.64638 5.67453 5.74521 5.80904 5.94545 6.08679 6.23054 6.34585 6.41861 6.48346 6.57701 6.64541 6.73319 6.92625 7.23724 7.56039 7.63287 7.69676 8.19834 8.23769 9.07259 9.71276 10.17289 11.17666 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.002903 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.446973 B = 9644.249047 C = 9937.631449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.584 5.584 3 C -0.265 4.265 4 H 0.073 0.927 5 C 0.006 3.994 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.175 3.825 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.114 3.886 15 N -0.611 5.611 16 C 0.531 3.469 17 O -0.529 6.529 18 C 0.035 3.965 19 H 0.077 0.923 20 C 0.080 3.920 21 O -0.376 6.376 22 C 0.061 3.939 23 C -0.004 4.004 24 N -0.508 5.508 25 C -0.002 4.002 26 C 0.268 3.732 27 F -0.204 7.204 28 F -0.191 7.191 29 C 0.072 3.928 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.006 0.994 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.065 0.935 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 -15.311 4.919 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.304 5.304 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.193 4.193 6 N -0.544 5.544 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.064 3.936 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.009 4.009 15 N -0.346 5.346 16 C 0.318 3.682 17 O -0.406 6.406 18 C -0.076 4.076 19 H 0.094 0.906 20 C 0.003 3.997 21 O -0.294 6.294 22 C -0.016 4.016 23 C -0.131 4.131 24 N -0.234 5.234 25 C -0.131 4.131 26 C 0.214 3.786 27 F -0.186 7.186 28 F -0.173 7.173 29 C -0.053 4.053 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.083 0.917 46 H 0.134 0.866 47 H 0.091 0.909 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.702 -16.124 4.873 18.129 hybrid contribution 0.777 1.624 -0.124 1.805 sum 7.479 -14.500 4.749 16.992 Atomic orbital electron populations 1.20855 0.82256 0.95967 0.99719 1.43918 1.01975 0.99862 1.84691 1.19237 0.95606 0.84092 1.40448 0.90966 1.24884 0.97876 0.98220 0.98333 1.70124 1.19529 1.26768 1.37986 0.86260 0.78567 0.83848 0.78006 1.21436 1.21786 1.20419 1.21397 0.96387 0.85699 0.90077 0.90378 1.23220 1.02955 0.93022 1.00179 1.21896 1.01077 0.98399 0.79482 1.48605 1.68539 1.09952 1.07512 1.19759 0.77493 0.84031 0.86965 1.90691 1.50838 1.21219 1.77835 1.22327 0.97009 0.95460 0.92830 0.90574 1.22502 0.93213 1.03180 0.80843 1.88052 1.65850 1.54615 1.20865 1.22744 0.88232 0.93247 0.97343 1.23474 0.99590 1.02679 0.87397 1.62003 1.09714 1.48636 1.03052 1.23398 0.89632 0.98845 1.01234 1.21911 0.96544 0.79456 0.80648 1.92885 1.94199 1.88902 1.42592 1.93024 1.86078 1.41750 1.96415 1.23379 1.01465 0.79215 1.01250 0.95072 0.93570 0.97586 0.93558 0.90452 0.90224 0.91949 0.91932 0.87519 0.91422 0.88060 0.91993 0.93298 0.87018 0.86574 0.91674 0.86554 0.90882 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.49 7.89 59.85 0.47 3.96 16 2 N -0.58 -13.16 2.97 -171.04 -0.51 -13.67 16 3 C -0.26 -6.73 9.65 -15.06 -0.15 -6.87 16 4 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 5 C 0.01 0.16 4.97 -17.43 -0.09 0.07 16 6 N -0.90 -24.75 10.77 55.49 0.60 -24.15 16 7 Si 0.90 20.76 29.60 -169.99 -5.03 15.73 16 8 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 C 0.18 3.14 3.54 -65.78 -0.23 2.91 16 12 H 0.08 1.41 7.91 -51.92 -0.41 1.00 16 13 C -0.15 -2.31 6.47 -24.90 -0.16 -2.47 16 14 C 0.11 1.60 6.87 -3.07 -0.02 1.58 16 15 N -0.61 -9.11 3.33 -170.52 -0.57 -9.68 16 16 C 0.53 8.05 6.04 -10.98 -0.07 7.99 16 17 O -0.53 -9.35 15.73 5.56 0.09 -9.26 16 18 C 0.04 0.48 1.90 -68.75 -0.13 0.35 16 19 H 0.08 1.05 6.63 -51.93 -0.34 0.70 16 20 C 0.08 1.07 6.27 37.21 0.23 1.30 16 21 O -0.38 -5.07 10.83 -35.23 -0.38 -5.45 16 22 C 0.06 0.67 7.01 37.21 0.26 0.93 16 23 C 0.00 -0.05 4.61 -3.71 -0.02 -0.06 16 24 N -0.51 -6.47 4.20 -227.73 -0.96 -7.42 16 25 C 0.00 -0.03 5.02 -3.82 -0.02 -0.05 16 26 C 0.27 2.47 5.16 37.16 0.19 2.66 16 27 F -0.20 -2.02 13.99 2.25 0.03 -1.99 16 28 F -0.19 -2.27 17.05 2.25 0.04 -2.23 16 29 C 0.07 1.17 6.34 -2.53 -0.02 1.15 16 30 H 0.03 0.76 7.45 -51.93 -0.39 0.37 16 31 H 0.05 1.13 7.15 -51.93 -0.37 0.76 16 32 H 0.01 0.11 5.97 -51.93 -0.31 -0.20 16 33 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.25 6.00 -51.93 -0.31 0.93 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 1.19 5.18 -51.93 -0.27 0.93 16 44 H 0.12 1.41 6.36 -51.93 -0.33 1.08 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 48 H 0.07 1.14 6.71 -51.93 -0.35 0.79 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -30.15 375.76 -8.00 -38.15 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.24 Total: 0.86 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 0.26 Total: 13.46 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -1.43 Total: -54.92 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.29 Total: -14.71 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.07 Total: -4.23 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.15 -8.00 -38.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972013545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.210 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds