Wall clock time and date at job start Wed Apr 1 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 119.99820 * 2 1 4 4 H 1.08000 * 119.99794 * 197.06126 * 3 2 1 5 5 C 1.38806 * 120.00126 * 17.06514 * 3 2 1 6 6 N 1.31614 * 120.00126 * 19.80101 * 5 3 2 7 7 Si 1.86802 * 119.99915 * 199.79947 * 5 3 2 8 8 H 1.48502 * 109.46862 * 94.99056 * 7 5 3 9 9 H 1.48500 * 109.47223 * 214.98353 * 7 5 3 10 10 H 1.48496 * 109.47550 * 334.98884 * 7 5 3 11 11 C 1.46496 * 119.99779 * 180.02562 * 2 1 3 12 12 H 1.09009 * 110.91703 * 176.09614 * 11 2 1 13 13 C 1.55159 * 111.00800 * 52.19682 * 11 2 1 14 14 C 1.54320 * 102.94298 * 206.42392 * 13 11 2 15 15 N 1.47023 * 107.27199 * 22.19096 * 14 13 11 16 16 C 1.34784 * 125.64776 * 181.08271 * 15 14 13 17 17 O 1.21277 * 120.00002 * 354.89387 * 16 15 14 18 18 C 1.50698 * 119.99655 * 174.89126 * 16 15 14 19 19 H 1.08991 * 109.51199 * 328.57543 * 18 16 15 20 20 C 1.53100 * 109.50483 * 88.66164 * 18 16 15 21 21 O 1.43013 * 109.26125 * 176.78109 * 20 18 16 22 22 C 1.43025 * 113.73647 * 301.32862 * 21 20 18 23 23 C 1.53096 * 109.25399 * 58.66977 * 22 21 20 24 24 N 1.47012 * 109.50613 * 208.48201 * 18 16 15 25 25 C 1.46900 * 110.99909 * 57.67800 * 24 18 16 26 26 C 1.53003 * 109.47513 * 175.77070 * 25 24 18 27 27 F 1.39898 * 109.46803 * 293.64890 * 26 25 24 28 28 F 1.39904 * 109.46714 * 53.64432 * 26 25 24 29 29 C 1.47425 * 108.70306 * 1.05924 * 15 14 13 30 30 H 1.08996 * 109.47043 * 275.52097 * 1 2 3 31 31 H 1.09002 * 109.47097 * 35.51972 * 1 2 3 32 32 H 1.08996 * 109.47528 * 155.52281 * 1 2 3 33 33 H 0.97006 * 120.00082 * 179.97438 * 6 5 3 34 34 H 1.08998 * 110.72001 * 88.06011 * 13 11 2 35 35 H 1.09000 * 110.86612 * 324.85676 * 13 11 2 36 36 H 1.09000 * 109.88492 * 262.77480 * 14 13 11 37 37 H 1.09000 * 110.01345 * 141.67949 * 14 13 11 38 38 H 1.09005 * 109.50682 * 296.71510 * 20 18 16 39 39 H 1.08997 * 109.50769 * 56.84422 * 20 18 16 40 40 H 1.09001 * 109.50448 * 178.60150 * 22 21 20 41 41 H 1.08993 * 109.50378 * 298.73688 * 22 21 20 42 42 H 1.09000 * 109.51281 * 63.08679 * 23 22 21 43 43 H 1.09006 * 109.50118 * 183.17512 * 23 22 21 44 44 H 1.09004 * 109.46992 * 295.76982 * 25 24 18 45 45 H 1.08998 * 109.47246 * 55.76502 * 25 24 18 46 46 H 1.08991 * 109.47026 * 173.64651 * 26 25 24 47 47 H 1.09000 * 110.36326 * 94.71440 * 29 15 14 48 48 H 1.08999 * 110.36501 * 217.03531 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1940 1.2065 -0.2744 5 6 1.5014 2.3616 0.3528 6 7 0.3840 2.3143 1.0465 7 14 2.2152 4.0108 -0.1571 8 1 1.5781 4.4560 -1.4225 9 1 1.9550 5.0131 0.9073 10 1 3.6797 3.8746 -0.3615 11 6 2.1974 -1.2687 -0.0006 12 1 3.2718 -1.0978 -0.0698 13 6 1.7066 -2.1938 -1.1454 14 6 2.0242 -3.6056 -0.6093 15 7 2.1175 -3.5058 0.8546 16 6 2.4020 -4.5208 1.6946 17 8 2.5156 -5.6494 1.2654 18 6 2.5790 -4.2531 3.1670 19 1 2.9911 -3.2540 3.3084 20 6 1.2231 -4.3512 3.8710 21 8 1.4077 -4.1707 5.2777 22 6 2.2948 -5.1242 5.8689 23 6 3.6615 -5.0339 5.1851 24 7 3.4969 -5.2483 3.7400 25 6 4.7947 -5.2250 3.0522 26 6 5.7550 -6.1963 3.7418 27 9 6.0410 -5.7331 5.0305 28 9 5.1616 -7.4607 3.8217 29 6 1.8489 -2.1116 1.2515 30 1 -0.3633 0.0989 1.0229 31 1 -0.3633 0.8364 -0.5971 32 1 -0.3634 -0.9352 -0.4258 33 1 -0.0689 3.1359 1.2933 34 1 2.2592 -1.9969 -2.0641 35 1 0.6354 -2.0751 -1.3083 36 1 2.9731 -3.9527 -1.0183 37 1 1.2274 -4.2969 -0.8836 38 1 0.5577 -3.5768 3.4890 39 1 0.7860 -5.3321 3.6842 40 1 2.4046 -4.9089 6.9318 41 1 1.8889 -6.1275 5.7401 42 1 4.0914 -4.0475 5.3594 43 1 4.3240 -5.7970 5.5938 44 1 4.6604 -5.5237 2.0126 45 1 5.2080 -4.2171 3.0902 46 1 6.6784 -6.2639 3.1668 47 1 0.7978 -1.9873 1.5120 48 1 2.4847 -1.8266 2.0897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972013545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:04 Heat of formation + Delta-G solvation = -142.397615 kcal Electronic energy + Delta-G solvation = -32895.694409 eV Core-core repulsion = 28236.443275 eV Total energy + Delta-G solvation = -4659.251134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -50.07387 -47.96462 -41.78125 -40.17940 -38.84425 -36.95309 -36.46777 -33.61324 -32.84951 -31.51590 -31.05324 -29.37981 -28.03592 -27.39565 -26.24617 -25.07576 -23.78007 -23.48481 -21.93928 -20.96016 -20.31236 -18.99155 -18.82526 -18.51440 -18.22877 -17.93897 -17.42019 -17.24522 -16.93493 -16.59951 -16.13333 -16.03937 -15.77918 -15.53647 -15.18682 -14.95719 -14.87186 -14.83954 -14.44854 -14.41282 -14.26358 -14.14150 -13.73066 -13.65467 -13.32909 -13.16158 -13.11614 -12.99027 -12.77537 -12.64304 -12.44978 -12.36664 -12.17103 -12.11093 -12.03153 -11.78795 -11.50788 -11.40530 -11.05495 -10.68057 -10.59777 -9.73771 -9.64623 -8.85310 -7.83992 -5.25524 1.35295 1.48885 1.51694 1.59087 1.71797 2.38816 2.52024 2.74605 2.80794 3.22363 3.27483 3.29002 3.48964 3.63942 3.69598 3.74275 3.86684 3.88198 3.92060 3.99173 4.14035 4.17034 4.20176 4.32845 4.37411 4.41688 4.47088 4.51459 4.57403 4.68638 4.76170 4.78027 4.83225 4.85018 5.02222 5.13300 5.21777 5.30037 5.42322 5.47381 5.65500 5.66087 5.74602 5.95589 6.29325 6.38321 7.00074 7.14019 7.86165 8.27682 9.19565 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.002903 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.446973 B = 9644.249047 C = 9937.631449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.598 5.598 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.047 4.047 6 N -0.932 5.932 7 Si 0.961 3.039 8 H -0.290 1.290 9 H -0.299 1.299 10 H -0.267 1.267 11 C 0.167 3.833 12 H 0.079 0.921 13 C -0.139 4.139 14 C 0.117 3.883 15 N -0.609 5.609 16 C 0.537 3.463 17 O -0.552 6.552 18 C 0.041 3.959 19 H 0.074 0.926 20 C 0.083 3.917 21 O -0.390 6.390 22 C 0.057 3.943 23 C 0.001 3.999 24 N -0.522 5.522 25 C -0.005 4.005 26 C 0.269 3.731 27 F -0.208 7.208 28 F -0.208 7.208 29 C 0.088 3.912 30 H 0.005 0.995 31 H 0.017 0.983 32 H 0.038 0.962 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.159 0.841 47 H 0.063 0.937 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.584 -16.279 4.638 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.319 5.319 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.243 4.243 6 N -0.578 5.578 7 Si 0.790 3.210 8 H -0.217 1.217 9 H -0.227 1.227 10 H -0.192 1.192 11 C 0.058 3.942 12 H 0.097 0.903 13 C -0.179 4.179 14 C -0.006 4.006 15 N -0.343 5.343 16 C 0.324 3.676 17 O -0.430 6.430 18 C -0.071 4.071 19 H 0.091 0.909 20 C 0.005 3.995 21 O -0.308 6.308 22 C -0.020 4.020 23 C -0.126 4.126 24 N -0.249 5.249 25 C -0.134 4.134 26 C 0.215 3.785 27 F -0.189 7.189 28 F -0.189 7.189 29 C -0.037 4.037 30 H 0.023 0.977 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.137 0.863 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.176 0.824 47 H 0.081 0.919 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.258 -17.128 4.580 19.559 hybrid contribution 0.343 1.833 -0.037 1.865 sum 8.601 -15.296 4.543 18.126 Atomic orbital electron populations 1.20564 0.82502 0.96306 0.97785 1.44048 1.02082 1.00799 1.84973 1.19570 0.95862 0.85269 1.38774 0.90539 1.25550 0.98586 1.01053 0.99063 1.70265 1.20973 1.26838 1.39731 0.85346 0.78442 0.80260 0.76971 1.21714 1.22664 1.19188 1.21567 0.96097 0.84598 0.91958 0.90305 1.23073 1.02701 0.92531 0.99552 1.21942 1.02053 0.97777 0.78785 1.48570 1.68382 1.09293 1.08036 1.19947 0.76649 0.83495 0.87468 1.90683 1.51958 1.22032 1.78349 1.22237 0.97483 0.95590 0.91771 0.90874 1.22445 0.93102 1.02880 0.81096 1.88035 1.66518 1.55515 1.20749 1.22959 0.87674 0.92895 0.98454 1.23479 0.99801 1.02771 0.86591 1.62028 1.10625 1.48323 1.03886 1.23447 0.89306 0.99953 1.00664 1.22229 0.97511 0.78056 0.80678 1.92873 1.94137 1.88886 1.43012 1.92991 1.86582 1.42876 1.96493 1.23018 1.00783 0.79669 1.00275 0.97701 0.96463 0.94394 0.94295 0.89004 0.90663 0.90629 0.91286 0.87664 0.91827 0.85718 0.91898 0.93455 0.86309 0.87791 0.90689 0.82365 0.91892 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.77 7.89 127.77 1.01 8.78 16 2 N -0.60 -26.65 2.97 -695.04 -2.06 -28.71 16 3 C -0.26 -13.34 9.65 84.03 0.81 -12.53 16 4 H 0.08 3.72 7.83 -2.91 -0.02 3.69 16 5 C -0.05 -2.46 4.97 84.86 0.42 -2.04 16 6 N -0.93 -52.29 10.77 21.65 0.23 -52.06 16 7 Si 0.96 42.83 29.60 68.60 2.03 44.86 16 8 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 9 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 C 0.17 5.75 3.54 46.38 0.16 5.91 16 12 H 0.08 2.71 7.91 -2.38 -0.02 2.69 16 13 C -0.14 -3.86 6.47 31.78 0.21 -3.66 16 14 C 0.12 3.00 6.87 86.73 0.60 3.60 16 15 N -0.61 -17.21 3.33 -811.80 -2.70 -19.91 16 16 C 0.54 15.65 6.04 87.66 0.53 16.18 16 17 O -0.55 -18.84 15.73 -3.02 -0.05 -18.88 16 18 C 0.04 1.08 1.90 44.18 0.08 1.16 16 19 H 0.07 1.95 6.63 -2.39 -0.02 1.94 16 20 C 0.08 2.15 6.27 72.02 0.45 2.60 16 21 O -0.39 -10.21 10.83 -148.98 -1.61 -11.82 16 22 C 0.06 1.16 7.01 72.01 0.50 1.67 16 23 C 0.00 0.01 4.61 86.31 0.40 0.41 16 24 N -0.52 -12.68 4.20 -874.39 -3.67 -16.35 16 25 C -0.01 -0.11 5.02 86.30 0.43 0.33 16 26 C 0.27 4.36 5.16 71.98 0.37 4.73 16 27 F -0.21 -3.67 13.99 44.97 0.63 -3.04 16 28 F -0.21 -4.61 17.05 44.97 0.77 -3.85 16 29 C 0.09 2.75 6.34 86.85 0.55 3.30 16 30 H 0.00 0.23 7.45 -2.39 -0.02 0.22 16 31 H 0.02 0.84 7.15 -2.39 -0.02 0.82 16 32 H 0.04 1.42 5.97 -2.39 -0.01 1.41 16 33 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.18 6.00 -2.39 -0.01 2.17 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.12 2.34 5.18 -2.38 -0.01 2.33 16 44 H 0.10 2.39 6.36 -2.38 -0.02 2.37 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.06 2.14 7.31 -2.39 -0.02 2.12 16 48 H 0.07 2.20 6.71 -2.39 -0.02 2.18 16 Total: -1.00 -64.34 375.76 1.07 -63.27 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.03 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: 6.53 Total: 30.45 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -8.20 Total: -117.02 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.66 Total: -30.70 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 1.40 Total: -6.89 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -64.34 1.07 -63.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972013545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.123 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds