Wall clock time and date at job start Wed Apr 1 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34784 * 120.00457 * 2 1 4 4 O 1.21273 * 119.99838 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99561 * 0.02562 * 3 2 1 6 6 H 1.09002 * 110.85924 * 297.66242 * 5 3 2 7 7 C 1.54625 * 110.96824 * 61.45423 * 5 3 2 8 8 C 1.51289 * 104.19689 * 142.91464 * 7 5 3 9 9 O 1.21298 * 124.94237 * 163.78181 * 8 7 5 10 10 N 1.34418 * 110.11073 * 343.74681 * 8 7 5 11 11 C 1.40768 * 124.34885 * 179.60962 * 10 8 7 12 12 C 1.40253 * 126.07978 * 179.71064 * 11 10 8 13 13 N 1.30828 * 108.33105 * 179.81821 * 12 11 10 14 14 N 1.40068 * 108.37182 * 0.44991 * 13 12 11 15 15 H 0.97005 * 126.05538 * 179.69366 * 14 13 12 16 16 C 1.35755 * 126.07858 * 0.03460 * 11 10 8 17 17 C 1.46768 * 111.30563 * 359.59170 * 10 8 7 18 18 C 1.46505 * 119.99724 * 180.02562 * 2 1 3 19 19 C 1.53780 * 113.61312 * 243.28722 * 18 2 1 20 20 C 1.53779 * 87.07737 * 89.20325 * 19 18 2 21 21 N 1.46501 * 113.61354 * 270.79790 * 20 19 18 22 22 C 1.36937 * 120.00186 * 201.56758 * 21 20 19 23 23 H 1.07997 * 119.99778 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00128 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99889 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00104 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47243 * 89.99897 * 26 24 22 28 28 H 1.48500 * 109.46974 * 209.99872 * 26 24 22 29 29 H 1.48500 * 109.46802 * 329.99671 * 26 24 22 30 30 C 1.53781 * 87.17520 * 25.38903 * 20 19 18 31 31 H 1.08999 * 109.46797 * 269.62109 * 1 2 3 32 32 H 1.09002 * 109.46696 * 29.61343 * 1 2 3 33 33 H 1.08998 * 109.47344 * 149.61788 * 1 2 3 34 34 H 1.09004 * 110.48831 * 261.58913 * 7 5 3 35 35 H 1.09006 * 110.48796 * 24.10537 * 7 5 3 36 36 H 1.08005 * 125.83574 * 0.02562 * 12 11 10 37 37 H 1.08004 * 126.21693 * 359.96626 * 16 11 10 38 38 H 1.09000 * 110.24744 * 258.01649 * 17 10 8 39 39 H 1.08998 * 110.24801 * 136.01379 * 17 10 8 40 40 H 1.09007 * 112.84897 * 112.09488 * 18 2 1 41 41 H 1.08993 * 113.61597 * 334.65237 * 19 18 2 42 42 H 1.09000 * 113.61147 * 203.74816 * 19 18 2 43 43 H 1.09004 * 113.61889 * 139.98403 * 20 19 18 44 44 H 0.97001 * 120.00189 * 21.56345 * 21 20 19 45 45 H 0.97003 * 119.99611 * 180.02562 * 25 24 22 46 46 H 1.08997 * 113.61381 * 89.15801 * 30 20 19 47 47 H 1.08998 * 113.61353 * 220.06025 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 1 0.7816 2.5722 -0.9013 7 6 0.5118 2.6062 1.2693 8 6 0.6020 4.0730 1.6288 9 8 -0.1494 4.6502 2.3861 10 7 1.6365 4.6433 0.9873 11 6 1.9893 6.0015 1.0994 12 6 3.0622 6.6322 0.4528 13 7 3.0674 7.8937 0.7995 14 7 2.0060 8.1120 1.6870 15 1 1.7766 8.9563 2.1060 16 6 1.3552 6.9322 1.8574 17 6 2.3513 3.6680 0.1555 18 6 2.1975 -1.2688 -0.0006 19 6 3.0540 -1.4862 1.2580 20 6 1.8159 -2.1423 1.8915 21 7 0.9426 -1.1958 2.5898 22 6 0.0762 -1.6442 3.5507 23 1 0.0363 -2.6958 3.7934 24 6 -0.7515 -0.7474 4.2121 25 7 -0.7033 0.5341 3.9159 26 14 -1.9340 -1.3593 5.5224 27 1 -1.2624 -1.3328 6.8466 28 1 -3.1315 -0.4819 5.5571 29 1 -2.3481 -2.7497 5.2050 30 6 1.3519 -2.4692 0.4622 31 1 -0.3633 -0.0068 1.0277 32 1 -0.3633 0.8935 -0.5078 33 1 -0.3634 -0.8865 -0.5197 34 1 -0.5200 2.3293 1.0529 35 1 0.9108 1.9889 2.0742 36 1 3.7622 6.1583 -0.2195 37 1 0.4901 6.7650 2.4819 38 1 3.2687 3.3502 0.6508 39 1 2.5780 4.0985 -0.8199 40 1 2.7363 -1.4461 -0.9314 41 1 3.3552 -0.5596 1.7465 42 1 3.8845 -2.1757 1.1071 43 1 2.0465 -3.0249 2.4883 44 1 0.9782 -0.2513 2.3717 45 1 -1.2815 1.1608 4.3783 46 1 1.7163 -3.4280 0.0934 47 1 0.2811 -2.3350 0.3093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998761847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:06 Heat of formation + Delta-G solvation = 70.052092 kcal Electronic energy + Delta-G solvation = -32065.066423 eV Core-core repulsion = 27865.716986 eV Total energy + Delta-G solvation = -4199.349437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.53903 -40.62052 -39.53656 -37.82513 -36.05805 -34.39936 -33.45594 -32.54987 -31.35215 -29.96792 -28.61375 -27.63997 -26.86023 -25.10850 -24.49303 -23.66194 -22.71804 -22.09366 -21.06477 -19.51265 -19.24103 -18.13987 -17.84945 -17.60306 -17.00343 -16.35633 -16.00313 -15.42753 -15.26330 -14.96850 -14.74556 -14.62640 -14.39483 -14.20781 -13.80470 -13.57501 -13.24848 -13.09889 -12.96906 -12.91958 -12.70751 -12.47016 -12.14790 -11.77576 -11.42629 -11.34065 -11.27951 -11.14129 -11.08048 -10.90154 -10.79681 -10.32172 -10.28480 -10.16664 -9.89026 -9.75646 -9.73805 -9.60676 -9.27956 -8.92932 -8.17654 -7.69095 -7.04191 -5.85694 -3.13700 1.72615 2.34065 2.53006 2.82312 3.07228 3.16349 3.31596 3.40056 3.46226 3.48141 4.29687 4.39576 4.53263 4.69084 4.80915 4.87185 4.97726 5.07336 5.19729 5.26056 5.41246 5.42749 5.44042 5.47002 5.51061 5.61059 5.76953 5.77732 5.82891 5.93138 6.00175 6.04120 6.13861 6.23983 6.36839 6.43237 6.59275 6.63457 6.69377 6.83246 6.84603 7.06224 7.09369 7.14205 7.50953 7.66888 7.68766 8.30330 8.34824 8.41661 9.46034 10.00534 10.37554 11.36397 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003838 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.607559 B = 7293.305145 C = 9255.934062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.580 5.580 3 C 0.529 3.471 4 O -0.542 6.542 5 C -0.125 4.125 6 H 0.115 0.885 7 C -0.132 4.132 8 C 0.523 3.477 9 O -0.516 6.516 10 N -0.542 5.542 11 C 0.016 3.984 12 C 0.040 3.960 13 N -0.283 5.283 14 N -0.475 5.475 15 H 0.444 0.556 16 C 0.038 3.962 17 C 0.123 3.877 18 C 0.129 3.871 19 C -0.161 4.161 20 C 0.165 3.835 21 N -0.704 5.704 22 C -0.247 4.247 23 H 0.070 0.930 24 C -0.005 4.005 25 N -0.927 5.927 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.291 1.291 29 H -0.284 1.284 30 C -0.183 4.183 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.187 0.813 37 H 0.192 0.808 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.385 0.615 45 H 0.259 0.741 46 H 0.080 0.920 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 6.458 -11.360 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.312 5.312 3 C 0.316 3.684 4 O -0.420 6.420 5 C -0.146 4.146 6 H 0.133 0.867 7 C -0.173 4.173 8 C 0.312 3.688 9 O -0.391 6.391 10 N -0.269 5.269 11 C -0.086 4.086 12 C -0.149 4.149 13 N -0.106 5.106 14 N -0.188 5.188 15 H 0.288 0.712 16 C -0.110 4.110 17 C 0.000 4.000 18 C 0.026 3.974 19 C -0.201 4.201 20 C 0.053 3.947 21 N -0.344 5.344 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.202 4.202 25 N -0.574 5.574 26 Si 0.737 3.263 27 H -0.219 1.219 28 H -0.218 1.218 29 H -0.209 1.209 30 C -0.224 4.224 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.204 0.796 37 H 0.209 0.791 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.221 0.779 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.550 7.779 -10.937 14.172 hybrid contribution -1.268 -0.502 0.876 1.621 sum 3.283 7.277 -10.061 12.843 Atomic orbital electron populations 1.22272 0.78733 1.01531 1.05561 1.47397 1.07289 1.04776 1.71749 1.19884 0.87514 0.84592 0.76453 1.90671 1.13575 1.87225 1.50490 1.22238 0.97959 0.93251 1.01185 0.86740 1.22430 1.03078 0.93791 0.97963 1.21029 0.79105 0.89540 0.79120 1.90655 1.44107 1.68998 1.35306 1.45312 1.30239 1.05500 1.45877 1.17617 1.00307 0.84722 1.05987 1.23676 0.98442 0.91058 1.01677 1.77218 1.07197 1.17062 1.09109 1.46111 1.24137 1.10268 1.38260 0.71195 1.22574 1.00614 0.85292 1.02563 1.21985 0.95492 0.86745 0.95782 1.21819 0.94473 0.83505 0.97645 1.23712 0.97788 1.01842 0.96760 1.21151 0.89707 0.93378 0.90493 1.42300 1.43182 1.05961 1.42966 1.19249 1.13010 0.93197 1.12311 0.91175 1.24670 1.00112 0.95426 1.00012 1.69531 1.42229 1.00823 1.44837 0.86230 0.80615 0.77511 0.81981 1.21868 1.21772 1.20933 1.24239 1.00622 0.95587 1.01933 0.87974 0.92106 0.91292 0.86559 0.84900 0.79628 0.79104 0.88633 0.89628 0.91120 0.90802 0.89889 0.92114 0.77856 0.93114 0.90199 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 7.40 59.85 0.44 1.32 16 2 N -0.58 -8.76 2.09 -172.90 -0.36 -9.12 16 3 C 0.53 8.10 6.68 -10.98 -0.07 8.02 16 4 O -0.54 -9.57 14.53 5.56 0.08 -9.49 16 5 C -0.12 -1.59 2.57 -90.14 -0.23 -1.82 16 6 H 0.11 1.14 7.56 -51.93 -0.39 0.75 16 7 C -0.13 -2.07 5.05 -26.74 -0.14 -2.20 16 8 C 0.52 8.75 7.98 -10.86 -0.09 8.67 16 9 O -0.52 -10.12 15.64 5.54 0.09 -10.04 16 10 N -0.54 -7.67 3.16 -112.47 -0.36 -8.03 16 11 C 0.02 0.22 6.80 -83.88 -0.57 -0.35 16 12 C 0.04 0.48 11.53 -17.22 -0.20 0.28 16 13 N -0.28 -3.53 12.69 30.70 0.39 -3.14 16 14 N -0.48 -5.17 7.40 30.69 0.23 -4.94 16 15 H 0.44 3.24 8.96 -182.62 -1.64 1.60 16 16 C 0.04 0.49 11.18 -16.68 -0.19 0.30 16 17 C 0.12 1.50 6.24 -3.12 -0.02 1.48 16 18 C 0.13 1.96 4.13 -67.03 -0.28 1.69 16 19 C -0.16 -2.70 7.12 -25.92 -0.18 -2.88 16 20 C 0.17 3.05 4.54 -67.12 -0.30 2.75 16 21 N -0.70 -15.75 4.06 -52.64 -0.21 -15.96 16 22 C -0.25 -6.23 9.98 -15.06 -0.15 -6.38 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 25 N -0.93 -24.71 13.06 55.49 0.72 -23.99 16 26 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 C -0.18 -2.77 7.17 -25.83 -0.19 -2.95 16 31 H 0.10 1.86 5.97 -51.93 -0.31 1.55 16 32 H 0.06 0.70 5.93 -51.93 -0.31 0.39 16 33 H 0.07 0.91 6.50 -51.93 -0.34 0.57 16 34 H 0.12 1.78 7.10 -51.93 -0.37 1.41 16 35 H 0.13 2.57 7.36 -51.93 -0.38 2.19 16 36 H 0.19 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.19 2.54 6.51 -52.48 -0.34 2.20 16 38 H 0.10 1.30 7.06 -51.93 -0.37 0.94 16 39 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.44 7.19 -51.93 -0.37 1.07 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.14 8.12 -51.93 -0.42 0.71 16 44 H 0.39 8.85 5.04 -40.82 -0.21 8.65 16 45 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.26 5.89 -51.93 -0.31 0.96 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -31.37 373.30 -8.49 -39.86 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -7.41 Total: 15.36 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -2.26 Total: 7.68 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.41 Total: -65.18 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.17 Total: -19.52 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.37 -8.49 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998761847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.909 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds