Wall clock time and date at job start Wed Apr 1 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34784 * 120.00457 * 2 1 4 4 O 1.21273 * 119.99838 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99561 * 0.02562 * 3 2 1 6 6 H 1.09002 * 110.85924 * 297.66242 * 5 3 2 7 7 C 1.54625 * 110.96824 * 61.45423 * 5 3 2 8 8 C 1.51289 * 104.19689 * 142.91464 * 7 5 3 9 9 O 1.21298 * 124.94237 * 163.78181 * 8 7 5 10 10 N 1.34418 * 110.11073 * 343.74681 * 8 7 5 11 11 C 1.40768 * 124.34885 * 179.60962 * 10 8 7 12 12 C 1.40253 * 126.07978 * 179.71064 * 11 10 8 13 13 N 1.30828 * 108.33105 * 179.81821 * 12 11 10 14 14 N 1.40068 * 108.37182 * 0.44991 * 13 12 11 15 15 H 0.97005 * 126.05538 * 179.69366 * 14 13 12 16 16 C 1.35755 * 126.07858 * 0.03460 * 11 10 8 17 17 C 1.46768 * 111.30563 * 359.59170 * 10 8 7 18 18 C 1.46505 * 119.99724 * 180.02562 * 2 1 3 19 19 C 1.53780 * 113.61312 * 243.28722 * 18 2 1 20 20 C 1.53779 * 87.07737 * 89.20325 * 19 18 2 21 21 N 1.46501 * 113.61354 * 270.79790 * 20 19 18 22 22 C 1.36937 * 120.00186 * 201.56758 * 21 20 19 23 23 H 1.07997 * 119.99778 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00128 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99889 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00104 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47243 * 89.99897 * 26 24 22 28 28 H 1.48500 * 109.46974 * 209.99872 * 26 24 22 29 29 H 1.48500 * 109.46802 * 329.99671 * 26 24 22 30 30 C 1.53781 * 87.17520 * 25.38903 * 20 19 18 31 31 H 1.08999 * 109.46797 * 269.62109 * 1 2 3 32 32 H 1.09002 * 109.46696 * 29.61343 * 1 2 3 33 33 H 1.08998 * 109.47344 * 149.61788 * 1 2 3 34 34 H 1.09004 * 110.48831 * 261.58913 * 7 5 3 35 35 H 1.09006 * 110.48796 * 24.10537 * 7 5 3 36 36 H 1.08005 * 125.83574 * 0.02562 * 12 11 10 37 37 H 1.08004 * 126.21693 * 359.96626 * 16 11 10 38 38 H 1.09000 * 110.24744 * 258.01649 * 17 10 8 39 39 H 1.08998 * 110.24801 * 136.01379 * 17 10 8 40 40 H 1.09007 * 112.84897 * 112.09488 * 18 2 1 41 41 H 1.08993 * 113.61597 * 334.65237 * 19 18 2 42 42 H 1.09000 * 113.61147 * 203.74816 * 19 18 2 43 43 H 1.09004 * 113.61889 * 139.98403 * 20 19 18 44 44 H 0.97001 * 120.00189 * 21.56345 * 21 20 19 45 45 H 0.97003 * 119.99611 * 180.02562 * 25 24 22 46 46 H 1.08997 * 113.61381 * 89.15801 * 30 20 19 47 47 H 1.08998 * 113.61353 * 220.06025 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 1 0.7816 2.5722 -0.9013 7 6 0.5118 2.6062 1.2693 8 6 0.6020 4.0730 1.6288 9 8 -0.1494 4.6502 2.3861 10 7 1.6365 4.6433 0.9873 11 6 1.9893 6.0015 1.0994 12 6 3.0622 6.6322 0.4528 13 7 3.0674 7.8937 0.7995 14 7 2.0060 8.1120 1.6870 15 1 1.7766 8.9563 2.1060 16 6 1.3552 6.9322 1.8574 17 6 2.3513 3.6680 0.1555 18 6 2.1975 -1.2688 -0.0006 19 6 3.0540 -1.4862 1.2580 20 6 1.8159 -2.1423 1.8915 21 7 0.9426 -1.1958 2.5898 22 6 0.0762 -1.6442 3.5507 23 1 0.0363 -2.6958 3.7934 24 6 -0.7515 -0.7474 4.2121 25 7 -0.7033 0.5341 3.9159 26 14 -1.9340 -1.3593 5.5224 27 1 -1.2624 -1.3328 6.8466 28 1 -3.1315 -0.4819 5.5571 29 1 -2.3481 -2.7497 5.2050 30 6 1.3519 -2.4692 0.4622 31 1 -0.3633 -0.0068 1.0277 32 1 -0.3633 0.8935 -0.5078 33 1 -0.3634 -0.8865 -0.5197 34 1 -0.5200 2.3293 1.0529 35 1 0.9108 1.9889 2.0742 36 1 3.7622 6.1583 -0.2195 37 1 0.4901 6.7650 2.4819 38 1 3.2687 3.3502 0.6508 39 1 2.5780 4.0985 -0.8199 40 1 2.7363 -1.4461 -0.9314 41 1 3.3552 -0.5596 1.7465 42 1 3.8845 -2.1757 1.1071 43 1 2.0465 -3.0249 2.4883 44 1 0.9782 -0.2513 2.3717 45 1 -1.2815 1.1608 4.3783 46 1 1.7163 -3.4280 0.0934 47 1 0.2811 -2.3350 0.3093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998761847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:05 Heat of formation + Delta-G solvation = 49.535228 kcal Electronic energy + Delta-G solvation = -32065.956101 eV Core-core repulsion = 27865.716986 eV Total energy + Delta-G solvation = -4200.239115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.60044 -41.77080 -40.77001 -39.15276 -37.33547 -35.75161 -35.09704 -33.75538 -32.31661 -31.75102 -29.68080 -28.81555 -28.06396 -26.59613 -25.76937 -25.22679 -23.78608 -23.38187 -22.10606 -20.76972 -20.38443 -19.38597 -19.25072 -18.98581 -18.29031 -17.50236 -17.24639 -16.72823 -16.61462 -16.33902 -16.16156 -15.67384 -15.50337 -15.44423 -15.33029 -14.82191 -14.74092 -14.51307 -14.21654 -14.13543 -13.77020 -13.73980 -13.34885 -13.20689 -13.01366 -12.76904 -12.49668 -12.47641 -12.42118 -12.36384 -12.09164 -12.07577 -11.65502 -11.61581 -11.37683 -11.14496 -10.98903 -10.77420 -10.70306 -10.55027 -9.41096 -8.86979 -8.76435 -7.83759 -5.09765 0.72026 1.20264 1.50645 1.53365 1.53658 1.59724 1.61662 2.01750 2.04554 2.23247 2.61941 3.14377 3.30794 3.47597 3.57639 3.78303 3.80712 3.90482 3.92764 3.97938 4.04342 4.15260 4.35528 4.41767 4.45250 4.46308 4.48717 4.60275 4.66075 4.77152 4.87400 4.93376 4.96922 5.06639 5.10011 5.10854 5.18465 5.34443 5.38333 5.50452 5.62020 5.76919 5.82274 5.94960 6.27209 6.37432 6.50274 6.57856 7.05368 7.21716 7.46055 8.21055 8.48572 9.35935 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003838 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.607559 B = 7293.305145 C = 9255.934062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.582 5.582 3 C 0.526 3.474 4 O -0.566 6.566 5 C -0.111 4.111 6 H 0.154 0.846 7 C -0.121 4.121 8 C 0.514 3.486 9 O -0.555 6.555 10 N -0.531 5.531 11 C -0.011 4.011 12 C 0.048 3.952 13 N -0.295 5.295 14 N -0.462 5.462 15 H 0.457 0.543 16 C 0.035 3.965 17 C 0.123 3.877 18 C 0.131 3.869 19 C -0.155 4.155 20 C 0.143 3.857 21 N -0.714 5.714 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.055 4.055 25 N -0.943 5.943 26 Si 0.955 3.045 27 H -0.300 1.300 28 H -0.300 1.300 29 H -0.273 1.273 30 C -0.160 4.160 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.216 0.784 37 H 0.184 0.816 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.109 0.891 43 H 0.055 0.945 44 H 0.381 0.619 45 H 0.247 0.753 46 H 0.112 0.888 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 6.039 -13.920 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.313 5.313 3 C 0.314 3.686 4 O -0.446 6.446 5 C -0.132 4.132 6 H 0.171 0.829 7 C -0.162 4.162 8 C 0.303 3.697 9 O -0.433 6.433 10 N -0.258 5.258 11 C -0.113 4.113 12 C -0.140 4.140 13 N -0.118 5.118 14 N -0.176 5.176 15 H 0.305 0.695 16 C -0.114 4.114 17 C 0.002 3.998 18 C 0.027 3.973 19 C -0.195 4.195 20 C 0.032 3.968 21 N -0.355 5.355 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.249 4.249 25 N -0.592 5.592 26 Si 0.787 3.213 27 H -0.228 1.228 28 H -0.227 1.227 29 H -0.198 1.198 30 C -0.201 4.201 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.232 0.768 37 H 0.201 0.799 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.074 0.926 44 H 0.216 0.784 45 H 0.056 0.944 46 H 0.130 0.870 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.332 7.343 -13.532 16.293 hybrid contribution -1.399 -0.401 1.714 2.248 sum 3.933 6.942 -11.818 14.259 Atomic orbital electron populations 1.22196 0.78196 1.03686 1.03544 1.47490 1.07634 1.04883 1.71278 1.20236 0.87328 0.85310 0.75753 1.90658 1.14682 1.87647 1.51654 1.22255 0.97589 0.92228 1.01111 0.82851 1.22169 1.03389 0.92490 0.98141 1.21207 0.79496 0.89927 0.79021 1.90623 1.45823 1.69804 1.37094 1.45264 1.29249 1.06064 1.45183 1.17901 1.01581 0.84514 1.07340 1.24085 0.97996 0.90575 1.01338 1.77203 1.07630 1.17466 1.09540 1.46134 1.23358 1.10394 1.37696 0.69487 1.22567 1.00474 0.86101 1.02242 1.22132 0.94372 0.86277 0.97048 1.21892 0.94080 0.83612 0.97680 1.23681 0.97962 1.00644 0.97165 1.21459 0.90507 0.92787 0.92034 1.42390 1.43478 1.06478 1.43122 1.19480 1.12715 0.93029 1.12199 0.91263 1.25218 1.01930 0.95755 1.01999 1.69685 1.42719 1.01256 1.45530 0.85421 0.78782 0.77335 0.79762 1.22831 1.22671 1.19809 1.24049 1.00348 0.97161 0.98501 0.92031 0.89242 0.89919 0.86646 0.88918 0.76799 0.79898 0.90032 0.85762 0.88960 0.94130 0.87312 0.92645 0.78373 0.94382 0.86972 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 7.40 127.77 0.95 2.74 16 2 N -0.58 -16.68 2.09 -819.31 -1.71 -18.40 16 3 C 0.53 15.40 6.68 87.66 0.59 15.99 16 4 O -0.57 -19.37 14.53 -3.01 -0.04 -19.41 16 5 C -0.11 -2.63 2.57 -10.48 -0.03 -2.66 16 6 H 0.15 2.49 7.56 -2.39 -0.02 2.47 16 7 C -0.12 -3.87 5.05 30.59 0.15 -3.71 16 8 C 0.51 17.59 7.98 87.90 0.70 18.29 16 9 O -0.56 -22.77 15.64 -3.09 -0.05 -22.82 16 10 N -0.53 -14.68 3.16 -628.34 -1.99 -16.67 16 11 C -0.01 -0.29 6.80 37.62 0.26 -0.03 16 12 C 0.05 1.05 11.53 85.33 0.98 2.03 16 13 N -0.30 -6.84 12.69 -56.77 -0.72 -7.56 16 14 N -0.46 -9.55 7.40 -56.81 -0.42 -9.97 16 15 H 0.46 6.21 8.96 -213.33 -1.91 4.29 16 16 C 0.04 0.91 11.18 83.50 0.93 1.84 16 17 C 0.12 2.80 6.24 86.83 0.54 3.34 16 18 C 0.13 3.67 4.13 45.57 0.19 3.86 16 19 C -0.16 -5.01 7.12 31.12 0.22 -4.79 16 20 C 0.14 5.16 4.54 45.52 0.21 5.37 16 21 N -0.71 -32.43 4.06 -320.45 -1.30 -33.73 16 22 C -0.24 -12.40 9.98 84.03 0.84 -11.57 16 23 H 0.07 3.49 7.83 -2.91 -0.02 3.46 16 24 C -0.05 -2.91 5.50 84.86 0.47 -2.45 16 25 N -0.94 -52.18 13.06 21.65 0.28 -51.90 16 26 Si 0.96 44.49 29.55 68.60 2.03 46.51 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 C -0.16 -4.45 7.17 31.18 0.22 -4.23 16 31 H 0.06 2.27 5.97 -2.39 -0.01 2.25 16 32 H 0.09 1.87 5.93 -2.39 -0.01 1.85 16 33 H 0.08 2.00 6.50 -2.39 -0.02 1.98 16 34 H 0.12 3.62 7.10 -2.39 -0.02 3.60 16 35 H 0.09 3.80 7.36 -2.38 -0.02 3.79 16 36 H 0.22 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.18 5.04 6.51 -2.91 -0.02 5.02 16 38 H 0.08 2.14 7.06 -2.39 -0.02 2.12 16 39 H 0.12 1.90 8.13 -2.39 -0.02 1.88 16 40 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.04 1.59 7.19 -2.39 -0.02 1.57 16 42 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.06 2.03 8.12 -2.38 -0.02 2.02 16 44 H 0.38 18.03 5.04 -92.71 -0.47 17.57 16 45 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 46 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.07 2.15 5.89 -2.39 -0.01 2.14 16 Total: -1.00 -70.49 373.30 1.96 -68.53 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -1.34 Total: 41.39 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 7.22 Total: 24.03 kcal Atomic # 7 Polarization: -132.37 SS G_CDS: -5.86 Total: -138.23 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.09 Total: -42.23 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -70.49 1.96 -68.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998761847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.061 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds