Wall clock time and date at job start Wed Apr 1 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 H 1.08998 * 110.85510 * 62.05343 * 5 3 2 7 7 C 1.54631 * 110.96529 * 298.26714 * 5 3 2 8 8 C 1.51279 * 104.19598 * 266.67660 * 7 5 3 9 9 O 1.21304 * 124.94301 * 163.71491 * 8 7 5 10 10 N 1.34425 * 110.11491 * 343.75602 * 8 7 5 11 11 C 1.40760 * 124.34709 * 179.57363 * 10 8 7 12 12 C 1.40254 * 126.08239 * 179.66676 * 11 10 8 13 13 N 1.30828 * 108.33642 * 179.81029 * 12 11 10 14 14 N 1.40067 * 108.36837 * 0.44054 * 13 12 11 15 15 H 0.96999 * 126.04766 * 179.71934 * 14 13 12 16 16 C 1.35758 * 126.08224 * 359.96349 * 11 10 8 17 17 C 1.46755 * 111.30078 * 359.58778 * 10 8 7 18 18 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 19 19 C 1.53776 * 113.61753 * 37.49344 * 18 2 1 20 20 C 1.53784 * 87.08152 * 220.01711 * 19 18 2 21 21 N 1.46500 * 113.69140 * 270.87075 * 20 19 18 22 22 C 1.36936 * 120.00184 * 252.53464 * 21 20 19 23 23 H 1.08006 * 119.99879 * 0.02562 * 22 21 20 24 24 C 1.38802 * 120.00096 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00116 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00289 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47169 * 89.99852 * 26 24 22 28 28 H 1.48498 * 109.47365 * 209.99995 * 26 24 22 29 29 H 1.48501 * 109.46613 * 330.00174 * 26 24 22 30 30 C 1.53775 * 87.07873 * 25.43531 * 20 19 18 31 31 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 32 32 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 33 33 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 34 34 H 1.08999 * 110.48891 * 25.35880 * 7 5 3 35 35 H 1.09004 * 110.48021 * 148.00162 * 7 5 3 36 36 H 1.08004 * 125.82609 * 359.97438 * 12 11 10 37 37 H 1.07998 * 126.22097 * 0.03163 * 16 11 10 38 38 H 1.09009 * 110.24768 * 258.01950 * 17 10 8 39 39 H 1.08994 * 110.24577 * 136.02313 * 17 10 8 40 40 H 1.09009 * 112.84819 * 168.80039 * 18 2 1 41 41 H 1.08999 * 113.61789 * 334.57056 * 19 18 2 42 42 H 1.09002 * 113.61770 * 105.47187 * 19 18 2 43 43 H 1.09005 * 113.60875 * 139.97971 * 20 19 18 44 44 H 0.97003 * 119.99791 * 72.53666 * 21 20 19 45 45 H 0.96996 * 120.00087 * 180.02562 * 25 24 22 46 46 H 1.09003 * 113.61080 * 220.01726 * 30 20 19 47 47 H 1.08999 * 113.61835 * 89.11940 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 1 0.7820 2.5675 0.9090 7 6 0.5113 2.6127 -1.2613 8 6 1.3883 3.3687 -2.2349 9 8 1.1955 3.4433 -3.4302 10 7 2.4128 3.9451 -1.5828 11 6 3.4159 4.7145 -2.2018 12 6 4.4953 5.3366 -1.5576 13 7 5.2129 5.9543 -2.4604 14 7 4.6133 5.7579 -3.7109 15 1 4.9317 6.1077 -4.5578 16 6 3.5076 4.9910 -3.5277 17 6 2.3512 3.6688 -0.1428 18 6 2.1974 -1.2688 -0.0006 19 6 1.5373 -2.3608 -0.8586 20 6 1.9129 -3.3527 0.2550 21 7 3.2392 -3.9516 0.0870 22 6 3.3556 -5.2629 -0.2901 23 1 2.4695 -5.8554 -0.4641 24 6 4.6123 -5.8306 -0.4487 25 7 5.6921 -5.1086 -0.2361 26 14 4.7711 -7.6191 -0.9638 27 1 4.8186 -7.7052 -2.4456 28 1 6.0185 -8.1894 -0.3947 29 1 3.6023 -8.3847 -0.4608 30 6 1.8953 -2.1550 1.2193 31 1 -0.3633 0.0002 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5139 34 1 0.2570 1.6306 -1.6601 35 1 -0.3920 3.1814 -1.0406 36 1 4.7005 5.3082 -0.4976 37 1 2.8251 4.6614 -4.2970 38 1 1.9627 4.5359 0.3914 39 1 3.3396 3.4050 0.2332 40 1 3.2625 -1.1426 -0.1956 41 1 0.4623 -2.2291 -0.9818 42 1 2.0526 -2.5468 -1.8010 43 1 1.1380 -4.0910 0.4616 44 1 4.0350 -3.4194 0.2430 45 1 6.5703 -5.5052 -0.3473 46 1 2.6997 -2.1747 1.9546 47 1 0.9183 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998761850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:16 Heat of formation + Delta-G solvation = 63.332791 kcal Electronic energy + Delta-G solvation = -30644.047042 eV Core-core repulsion = 26444.406234 eV Total energy + Delta-G solvation = -4199.640808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.84843 -40.86119 -39.64181 -38.13326 -36.46857 -35.07688 -33.51017 -32.71816 -31.53341 -29.85803 -28.84692 -28.15036 -27.17117 -25.24139 -24.99938 -23.69399 -22.98974 -22.25300 -21.37393 -19.65000 -19.51104 -18.38256 -18.30203 -17.73079 -17.33143 -16.65925 -16.38719 -15.82047 -15.54145 -15.27369 -14.89057 -14.78028 -14.63657 -14.14371 -14.09482 -13.89952 -13.67754 -13.50554 -13.10283 -12.98241 -12.80179 -12.69035 -12.46772 -12.07802 -11.99266 -11.91919 -11.78755 -11.53847 -11.24771 -10.88170 -10.78499 -10.65022 -10.29173 -10.17987 -10.13065 -9.91731 -9.90951 -9.70752 -9.57114 -8.92752 -8.50452 -7.95813 -7.02988 -5.80395 -3.11002 1.54300 1.99921 2.29366 2.49997 2.81974 2.90601 2.94648 3.42061 3.46828 3.48989 3.84724 3.88635 4.18117 4.41294 4.54681 4.61589 4.69471 4.79235 5.00332 5.01471 5.06350 5.09203 5.16519 5.24679 5.28885 5.33154 5.36052 5.39235 5.40336 5.46421 5.59680 5.82038 5.83987 5.95467 6.03987 6.16577 6.36462 6.51007 6.52683 6.67655 6.73918 6.74307 6.97145 6.97837 7.33667 7.42564 7.67550 7.83366 8.12567 8.37512 9.48285 10.04473 10.38242 11.41596 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.002414 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.048385 B =11597.683517 C =12673.170304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.598 5.598 3 C 0.514 3.486 4 O -0.527 6.527 5 C -0.124 4.124 6 H 0.130 0.870 7 C -0.147 4.147 8 C 0.515 3.485 9 O -0.524 6.524 10 N -0.528 5.528 11 C 0.011 3.989 12 C 0.046 3.954 13 N -0.278 5.278 14 N -0.474 5.474 15 H 0.445 0.555 16 C 0.042 3.958 17 C 0.114 3.886 18 C 0.124 3.876 19 C -0.182 4.182 20 C 0.173 3.827 21 N -0.705 5.705 22 C -0.247 4.247 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.929 5.929 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.167 4.167 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.188 0.812 37 H 0.191 0.809 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.071 0.929 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 22.998 0.789 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C 0.301 3.699 4 O -0.403 6.403 5 C -0.146 4.146 6 H 0.147 0.853 7 C -0.187 4.187 8 C 0.304 3.696 9 O -0.400 6.400 10 N -0.255 5.255 11 C -0.091 4.091 12 C -0.143 4.143 13 N -0.101 5.101 14 N -0.186 5.186 15 H 0.290 0.710 16 C -0.107 4.107 17 C -0.008 4.008 18 C 0.022 3.978 19 C -0.225 4.225 20 C 0.059 3.941 21 N -0.344 5.344 22 C -0.377 4.377 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.207 4.207 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.205 0.795 37 H 0.208 0.792 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.173 23.525 -0.080 26.488 hybrid contribution -0.275 -1.173 -0.475 1.295 sum -12.448 22.352 -0.555 25.590 Atomic orbital electron populations 1.21896 0.80088 1.03339 1.01844 1.47918 1.06719 1.06137 1.72248 1.20182 0.87982 0.84994 0.76765 1.90752 1.13594 1.86858 1.49060 1.22341 0.97699 0.93755 1.00788 0.85252 1.22493 0.98692 1.03650 0.93884 1.20855 0.81335 0.79103 0.88341 1.90675 1.73298 1.61643 1.14385 1.45071 1.23359 1.48401 1.08633 1.17551 0.95049 1.04941 0.91573 1.23685 0.92696 0.97720 1.00181 1.77271 1.20581 1.23432 0.88821 1.46133 1.20818 1.42760 1.08866 0.71041 1.22520 0.92821 0.97907 0.97418 1.22132 1.02512 0.96286 0.79887 1.22799 0.97747 0.79385 0.97831 1.24317 0.99391 0.97683 1.01070 1.20896 0.89926 0.91284 0.91959 1.42215 1.00987 1.10507 1.80671 1.19257 0.92351 0.87246 1.38893 0.90929 1.24791 0.95414 0.98333 1.02192 1.69670 0.97121 1.35741 1.55122 0.86169 0.77061 0.84590 0.78211 1.21648 1.21724 1.20674 1.23957 1.01445 0.97726 0.97614 0.92284 0.90251 0.91119 0.86659 0.86241 0.79529 0.79243 0.89392 0.87644 0.86426 0.90925 0.90966 0.91396 0.77933 0.93332 0.91059 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 7.60 59.85 0.45 0.99 16 2 N -0.60 -7.24 3.06 -173.00 -0.53 -7.77 16 3 C 0.51 6.50 7.08 -10.98 -0.08 6.42 16 4 O -0.53 -9.12 14.99 5.55 0.08 -9.04 16 5 C -0.12 -0.93 2.57 -90.14 -0.23 -1.16 16 6 H 0.13 0.49 7.56 -51.93 -0.39 0.10 16 7 C -0.15 -1.08 5.58 -26.74 -0.15 -1.23 16 8 C 0.52 5.96 7.98 -10.86 -0.09 5.88 16 9 O -0.52 -7.62 15.64 5.54 0.09 -7.53 16 10 N -0.53 -5.73 3.16 -112.49 -0.36 -6.08 16 11 C 0.01 0.13 6.80 -83.88 -0.57 -0.44 16 12 C 0.05 0.49 11.53 -17.22 -0.20 0.29 16 13 N -0.28 -3.22 12.69 30.70 0.39 -2.83 16 14 N -0.47 -4.58 7.40 30.69 0.23 -4.35 16 15 H 0.44 2.75 8.96 -182.62 -1.64 1.12 16 16 C 0.04 0.46 11.18 -16.68 -0.19 0.28 16 17 C 0.11 0.92 6.30 -3.13 -0.02 0.90 16 18 C 0.12 1.99 4.09 -67.12 -0.27 1.71 16 19 C -0.18 -2.99 7.31 -25.92 -0.19 -3.18 16 20 C 0.17 3.26 4.56 -67.12 -0.31 2.96 16 21 N -0.71 -17.46 5.31 -52.64 -0.28 -17.74 16 22 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 26 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 C -0.17 -2.61 7.36 -25.92 -0.19 -2.80 16 31 H 0.06 0.41 6.93 -51.93 -0.36 0.05 16 32 H 0.08 0.58 6.34 -51.93 -0.33 0.25 16 33 H 0.07 0.31 6.27 -51.93 -0.33 -0.02 16 34 H 0.12 0.91 5.48 -51.93 -0.28 0.63 16 35 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.19 2.06 6.51 -52.49 -0.34 1.72 16 38 H 0.09 0.42 8.14 -51.92 -0.42 -0.01 16 39 H 0.11 1.01 6.94 -51.93 -0.36 0.65 16 40 H 0.12 2.34 7.23 -51.92 -0.38 1.96 16 41 H 0.07 0.96 6.72 -51.93 -0.35 0.61 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 44 H 0.39 10.34 7.90 -40.82 -0.32 10.01 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.08 0.98 6.92 -51.93 -0.36 0.62 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -37.40 380.20 -8.74 -46.14 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.52 Total: 10.39 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.27 Total: 3.30 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.18 Total: -66.24 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.17 Total: -16.57 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.40 -8.74 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998761850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.468 kcal (2) G-P(sol) polarization free energy of solvation -37.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds