Wall clock time and date at job start Wed Apr 1 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 H 1.08998 * 110.85510 * 62.05343 * 5 3 2 7 7 C 1.54631 * 110.96529 * 298.26714 * 5 3 2 8 8 C 1.51279 * 104.19598 * 266.67660 * 7 5 3 9 9 O 1.21304 * 124.94301 * 163.71491 * 8 7 5 10 10 N 1.34425 * 110.11491 * 343.75602 * 8 7 5 11 11 C 1.40760 * 124.34709 * 179.57363 * 10 8 7 12 12 C 1.40254 * 126.08239 * 179.66676 * 11 10 8 13 13 N 1.30828 * 108.33642 * 179.81029 * 12 11 10 14 14 N 1.40067 * 108.36837 * 0.44054 * 13 12 11 15 15 H 0.96999 * 126.04766 * 179.71934 * 14 13 12 16 16 C 1.35758 * 126.08224 * 359.96349 * 11 10 8 17 17 C 1.46755 * 111.30078 * 359.58778 * 10 8 7 18 18 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 19 19 C 1.53776 * 113.61753 * 37.49344 * 18 2 1 20 20 C 1.53784 * 87.08152 * 220.01711 * 19 18 2 21 21 N 1.46500 * 113.69140 * 270.87075 * 20 19 18 22 22 C 1.36936 * 120.00184 * 252.53464 * 21 20 19 23 23 H 1.08006 * 119.99879 * 0.02562 * 22 21 20 24 24 C 1.38802 * 120.00096 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00116 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00289 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47169 * 89.99852 * 26 24 22 28 28 H 1.48498 * 109.47365 * 209.99995 * 26 24 22 29 29 H 1.48501 * 109.46613 * 330.00174 * 26 24 22 30 30 C 1.53775 * 87.07873 * 25.43531 * 20 19 18 31 31 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 32 32 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 33 33 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 34 34 H 1.08999 * 110.48891 * 25.35880 * 7 5 3 35 35 H 1.09004 * 110.48021 * 148.00162 * 7 5 3 36 36 H 1.08004 * 125.82609 * 359.97438 * 12 11 10 37 37 H 1.07998 * 126.22097 * 0.03163 * 16 11 10 38 38 H 1.09009 * 110.24768 * 258.01950 * 17 10 8 39 39 H 1.08994 * 110.24577 * 136.02313 * 17 10 8 40 40 H 1.09009 * 112.84819 * 168.80039 * 18 2 1 41 41 H 1.08999 * 113.61789 * 334.57056 * 19 18 2 42 42 H 1.09002 * 113.61770 * 105.47187 * 19 18 2 43 43 H 1.09005 * 113.60875 * 139.97971 * 20 19 18 44 44 H 0.97003 * 119.99791 * 72.53666 * 21 20 19 45 45 H 0.96996 * 120.00087 * 180.02562 * 25 24 22 46 46 H 1.09003 * 113.61080 * 220.01726 * 30 20 19 47 47 H 1.08999 * 113.61835 * 89.11940 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 1 0.7820 2.5675 0.9090 7 6 0.5113 2.6127 -1.2613 8 6 1.3883 3.3687 -2.2349 9 8 1.1955 3.4433 -3.4302 10 7 2.4128 3.9451 -1.5828 11 6 3.4159 4.7145 -2.2018 12 6 4.4953 5.3366 -1.5576 13 7 5.2129 5.9543 -2.4604 14 7 4.6133 5.7579 -3.7109 15 1 4.9317 6.1077 -4.5578 16 6 3.5076 4.9910 -3.5277 17 6 2.3512 3.6688 -0.1428 18 6 2.1974 -1.2688 -0.0006 19 6 1.5373 -2.3608 -0.8586 20 6 1.9129 -3.3527 0.2550 21 7 3.2392 -3.9516 0.0870 22 6 3.3556 -5.2629 -0.2901 23 1 2.4695 -5.8554 -0.4641 24 6 4.6123 -5.8306 -0.4487 25 7 5.6921 -5.1086 -0.2361 26 14 4.7711 -7.6191 -0.9638 27 1 4.8186 -7.7052 -2.4456 28 1 6.0185 -8.1894 -0.3947 29 1 3.6023 -8.3847 -0.4608 30 6 1.8953 -2.1550 1.2193 31 1 -0.3633 0.0002 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5139 34 1 0.2570 1.6306 -1.6601 35 1 -0.3920 3.1814 -1.0406 36 1 4.7005 5.3082 -0.4976 37 1 2.8251 4.6614 -4.2970 38 1 1.9627 4.5359 0.3914 39 1 3.3396 3.4050 0.2332 40 1 3.2625 -1.1426 -0.1956 41 1 0.4623 -2.2291 -0.9818 42 1 2.0526 -2.5468 -1.8010 43 1 1.1380 -4.0910 0.4616 44 1 4.0350 -3.4194 0.2430 45 1 6.5703 -5.5052 -0.3473 46 1 2.6997 -2.1747 1.9546 47 1 0.9183 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998761850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:14 Heat of formation + Delta-G solvation = 34.434103 kcal Electronic energy + Delta-G solvation = -30645.300183 eV Core-core repulsion = 26444.406234 eV Total energy + Delta-G solvation = -4200.893949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.64515 -41.73944 -40.67902 -39.34894 -37.35458 -36.28696 -34.99215 -33.83737 -32.36663 -31.73996 -29.70200 -28.81384 -27.90523 -26.65101 -26.33640 -25.26241 -23.83783 -23.38133 -22.20794 -20.50142 -20.46666 -19.64957 -19.32672 -19.17523 -18.42350 -17.65735 -17.33989 -16.76275 -16.68332 -16.36293 -16.10994 -15.74503 -15.62529 -15.48507 -15.29870 -14.88403 -14.82538 -14.39543 -14.32501 -13.99222 -13.79429 -13.58131 -13.43354 -13.21482 -13.19738 -13.02435 -12.78000 -12.64868 -12.47162 -12.44600 -12.17422 -12.09671 -11.79065 -11.66586 -11.42573 -11.20364 -10.96553 -10.91919 -10.75353 -10.66341 -9.52169 -9.04746 -8.77833 -7.96605 -5.26765 0.69208 1.17898 1.46102 1.48417 1.56855 1.56906 1.59194 1.99935 2.04068 2.19634 2.54369 3.19567 3.24918 3.35568 3.47962 3.69171 3.77273 3.86825 3.88053 3.89196 3.95298 4.25396 4.29360 4.35778 4.43296 4.45463 4.52069 4.57926 4.71973 4.75188 4.78212 4.80967 4.84003 4.86085 5.02084 5.06130 5.13428 5.15644 5.26736 5.34611 5.51958 5.73244 5.74033 6.00585 6.24017 6.25480 6.50245 6.54254 7.02591 7.20516 7.29775 8.06610 8.27519 9.27010 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.002414 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.048385 B =11597.683517 C =12673.170304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.596 5.596 3 C 0.502 3.498 4 O -0.588 6.588 5 C -0.106 4.106 6 H 0.186 0.814 7 C -0.134 4.134 8 C 0.496 3.504 9 O -0.567 6.567 10 N -0.533 5.533 11 C -0.011 4.011 12 C 0.044 3.956 13 N -0.301 5.301 14 N -0.465 5.465 15 H 0.457 0.543 16 C 0.034 3.966 17 C 0.108 3.892 18 C 0.129 3.871 19 C -0.163 4.163 20 C 0.150 3.850 21 N -0.725 5.725 22 C -0.241 4.241 23 H 0.084 0.916 24 C -0.081 4.081 25 N -0.974 5.974 26 Si 0.976 3.024 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.263 1.263 30 C -0.143 4.143 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.169 0.831 36 H 0.210 0.790 37 H 0.189 0.811 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.117 0.883 42 H 0.035 0.965 43 H 0.079 0.921 44 H 0.370 0.630 45 H 0.250 0.750 46 H 0.047 0.953 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.975 23.892 2.211 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.327 5.327 3 C 0.291 3.709 4 O -0.469 6.469 5 C -0.127 4.127 6 H 0.203 0.797 7 C -0.173 4.173 8 C 0.286 3.714 9 O -0.447 6.447 10 N -0.258 5.258 11 C -0.114 4.114 12 C -0.144 4.144 13 N -0.124 5.124 14 N -0.178 5.178 15 H 0.304 0.696 16 C -0.115 4.115 17 C -0.013 4.013 18 C 0.025 3.975 19 C -0.205 4.205 20 C 0.040 3.960 21 N -0.362 5.362 22 C -0.373 4.373 23 H 0.102 0.898 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.805 3.195 27 H -0.217 1.217 28 H -0.225 1.225 29 H -0.187 1.187 30 C -0.183 4.183 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.186 0.814 36 H 0.226 0.774 37 H 0.205 0.795 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.201 0.799 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.470 24.442 1.358 29.504 hybrid contribution 0.981 -1.382 -0.941 1.939 sum -15.488 23.061 0.417 27.782 Atomic orbital electron populations 1.22364 0.76515 1.06091 1.03480 1.47950 1.08686 1.04436 1.71611 1.21236 0.87662 0.86740 0.75257 1.90739 1.16628 1.87835 1.51649 1.22436 0.97251 0.89786 1.03229 0.79691 1.22598 0.99223 1.03496 0.92014 1.21773 0.81941 0.79102 0.88575 1.90645 1.74489 1.63216 1.16323 1.45343 1.22812 1.47783 1.09882 1.17892 0.95903 1.05561 0.92023 1.24059 0.92149 0.97056 1.01146 1.77216 1.21335 1.24281 0.89555 1.46168 1.20265 1.42283 1.09121 0.69569 1.22602 0.93139 0.98136 0.97596 1.22419 1.02115 0.98268 0.78543 1.22217 0.95645 0.81817 0.97856 1.24129 1.01538 0.96527 0.98277 1.21264 0.87507 0.92743 0.94508 1.42438 1.02805 1.09907 1.81099 1.19727 0.92580 0.88387 1.36568 0.89776 1.25662 0.95315 1.02636 1.03667 1.69852 0.97325 1.37539 1.57701 0.85095 0.77115 0.79834 0.77452 1.21700 1.22468 1.18702 1.23796 1.02977 0.95198 0.96313 0.91186 0.89351 0.86678 0.86835 0.81393 0.77375 0.79465 0.84988 0.89789 0.91770 0.86513 0.94590 0.90270 0.79907 0.94123 0.93388 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 7.60 127.77 0.97 1.51 16 2 N -0.60 -12.93 3.06 -819.64 -2.51 -15.44 16 3 C 0.50 11.84 7.08 87.66 0.62 12.46 16 4 O -0.59 -21.10 14.99 -3.04 -0.05 -21.14 16 5 C -0.11 -1.13 2.57 -10.48 -0.03 -1.15 16 6 H 0.19 -0.02 7.56 -2.39 -0.02 -0.04 16 7 C -0.13 -1.37 5.58 30.59 0.17 -1.20 16 8 C 0.50 10.71 7.98 87.90 0.70 11.41 16 9 O -0.57 -16.45 15.64 -3.10 -0.05 -16.50 16 10 N -0.53 -10.91 3.16 -628.38 -1.99 -12.90 16 11 C -0.01 -0.25 6.80 37.62 0.26 0.00 16 12 C 0.04 0.94 11.53 85.33 0.98 1.93 16 13 N -0.30 -7.02 12.69 -56.77 -0.72 -7.74 16 14 N -0.46 -9.19 7.40 -56.82 -0.42 -9.61 16 15 H 0.46 5.85 8.96 -213.34 -1.91 3.94 16 16 C 0.03 0.79 11.18 83.50 0.93 1.72 16 17 C 0.11 1.44 6.30 86.83 0.55 1.98 16 18 C 0.13 4.10 4.09 45.52 0.19 4.28 16 19 C -0.16 -5.19 7.31 31.12 0.23 -4.97 16 20 C 0.15 5.59 4.56 45.52 0.21 5.79 16 21 N -0.73 -37.04 5.31 -320.45 -1.70 -38.74 16 22 C -0.24 -13.40 9.97 84.03 0.84 -12.56 16 23 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 24 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 25 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 26 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 29 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 30 C -0.14 -4.27 7.36 31.12 0.23 -4.04 16 31 H 0.07 0.58 6.93 -2.39 -0.02 0.56 16 32 H 0.09 0.74 6.34 -2.39 -0.02 0.72 16 33 H 0.11 0.12 6.27 -2.39 -0.01 0.11 16 34 H 0.11 1.30 5.48 -2.39 -0.01 1.29 16 35 H 0.17 0.17 8.14 -2.38 -0.02 0.15 16 36 H 0.21 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.19 4.32 6.51 -2.91 -0.02 4.30 16 38 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.08 1.55 6.94 -2.39 -0.02 1.53 16 40 H 0.06 2.76 7.23 -2.38 -0.02 2.74 16 41 H 0.12 2.66 6.72 -2.39 -0.02 2.65 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 2.75 8.10 -2.38 -0.02 2.73 16 44 H 0.37 21.01 7.90 -92.71 -0.73 20.27 16 45 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.12 2.55 6.92 -2.39 -0.02 2.53 16 Total: -1.00 -90.82 380.20 0.58 -90.24 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -1.60 Total: 31.64 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 7.31 Total: 12.90 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -7.06 Total: -145.85 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.09 Total: -37.64 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -90.82 0.58 -90.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998761850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.670 kcal (2) G-P(sol) polarization free energy of solvation -90.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds