Wall clock time and date at job start Wed Apr 1 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 119.99787 * 2 1 4 4 O 1.21284 * 120.00225 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00089 * 0.02562 * 3 2 1 6 6 H 1.08993 * 109.50608 * 299.91304 * 5 3 2 7 7 C 1.53101 * 109.50382 * 59.99905 * 5 3 2 8 8 O 1.43019 * 109.25271 * 176.78595 * 7 5 3 9 9 C 1.43018 * 113.73653 * 301.32238 * 8 7 5 10 10 C 1.53098 * 109.25647 * 58.67715 * 9 8 7 11 11 N 1.47012 * 109.25732 * 303.14936 * 10 9 8 12 12 C 1.46901 * 111.00096 * 182.39377 * 11 10 9 13 13 C 1.53002 * 109.47111 * 40.71536 * 12 11 10 14 14 F 1.39905 * 109.47274 * 293.32584 * 13 12 11 15 15 F 1.39902 * 109.47318 * 53.32204 * 13 12 11 16 16 C 1.46497 * 120.00105 * 180.02562 * 2 1 3 17 17 C 1.53782 * 113.61690 * 59.99778 * 16 2 1 18 18 C 1.53776 * 87.08536 * 219.93476 * 17 16 2 19 19 N 1.46491 * 113.61766 * 139.97906 * 18 17 16 20 20 C 1.36940 * 120.00628 * 155.00191 * 19 18 17 21 21 H 1.08000 * 119.99430 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00525 * 180.27810 * 20 19 18 23 23 N 1.31622 * 120.00292 * 359.72054 * 22 20 19 24 24 Si 1.86805 * 120.00093 * 179.72624 * 22 20 19 25 25 H 1.48502 * 109.46930 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47024 * 120.00107 * 24 22 20 27 27 H 1.48500 * 109.46825 * 239.99936 * 24 22 20 28 28 C 1.53781 * 87.08065 * 25.43107 * 18 17 16 29 29 H 1.09005 * 109.46920 * 269.99266 * 1 2 3 30 30 H 1.08993 * 109.47175 * 30.00066 * 1 2 3 31 31 H 1.09001 * 109.47176 * 149.99824 * 1 2 3 32 32 H 1.09001 * 109.50600 * 296.71292 * 7 5 3 33 33 H 1.09001 * 109.50737 * 56.80834 * 7 5 3 34 34 H 1.09002 * 109.50413 * 178.60916 * 9 8 7 35 35 H 1.08993 * 109.51032 * 298.73596 * 9 8 7 36 36 H 1.09001 * 109.50517 * 63.08254 * 10 9 8 37 37 H 1.09003 * 109.50711 * 183.16751 * 10 9 8 38 38 H 1.08994 * 109.47214 * 160.71223 * 12 11 10 39 39 H 1.09001 * 109.46797 * 280.71915 * 12 11 10 40 40 H 1.08994 * 109.47373 * 173.32477 * 13 12 11 41 41 H 1.09003 * 112.85289 * 191.19762 * 16 2 1 42 42 H 1.09001 * 113.61498 * 105.38325 * 17 16 2 43 43 H 1.09003 * 113.61364 * 334.48728 * 17 16 2 44 44 H 1.09000 * 113.61263 * 270.80340 * 18 17 16 45 45 H 0.97008 * 120.00219 * 335.00254 * 19 18 17 46 46 H 0.96991 * 120.00419 * 179.97438 * 23 22 20 47 47 H 1.09004 * 113.61568 * 89.11582 * 28 18 17 48 48 H 1.09000 * 113.61635 * 220.01795 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.7593 2.5315 -0.8897 7 6 0.5053 2.5539 1.2507 8 8 -0.1497 3.8249 1.2843 9 6 0.7504 4.9363 1.2910 10 6 1.6329 4.8788 0.0413 11 7 2.3399 3.5903 0.0058 12 6 3.2429 3.5169 -1.1505 13 6 3.9454 4.8635 -1.3354 14 9 3.0060 5.8331 -1.7024 15 9 4.5578 5.2387 -0.1348 16 6 2.1975 -1.2687 -0.0006 17 6 1.8954 -2.1540 -1.2212 18 6 1.9152 -3.3527 -0.2582 19 7 0.8750 -4.3460 -0.5360 20 6 1.0506 -5.6480 -0.1497 21 1 1.9560 -5.9424 0.3602 22 6 0.0674 -6.5903 -0.4181 23 7 -1.0362 -6.2314 -1.0391 24 14 0.3105 -8.3679 0.1021 25 1 1.6255 -8.5107 0.7771 26 1 -0.7726 -8.7621 1.0384 27 1 0.2720 -9.2440 -1.0963 28 6 1.5395 -2.3626 0.8569 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 -0.2415 1.7603 1.2226 33 1 1.1249 2.4394 2.1402 34 1 0.1810 5.8657 1.2920 35 1 1.3772 4.8918 2.1816 36 1 1.0109 4.9773 -0.8484 37 1 2.3582 5.6920 0.0701 38 1 3.9874 2.7390 -0.9814 39 1 2.6680 3.2811 -2.0461 40 1 4.7005 4.7753 -2.1163 41 1 3.2625 -1.1427 0.1946 42 1 2.6992 -2.1719 -1.9572 43 1 0.9177 -1.9666 -1.6652 44 1 2.9028 -3.7972 -0.1346 45 1 0.0616 -4.0815 -0.9937 46 1 -1.7231 -6.8899 -1.2270 47 1 0.4644 -2.2323 0.9811 48 1 2.0558 -2.5489 1.7986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999175016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:19 Heat of formation + Delta-G solvation = -131.076609 kcal Electronic energy + Delta-G solvation = -32221.806697 eV Core-core repulsion = 27563.046479 eV Total energy + Delta-G solvation = -4658.760218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.11943 -47.95399 -41.94026 -40.39344 -39.11154 -36.94433 -36.19842 -35.02789 -32.67181 -31.70491 -31.32536 -28.22966 -27.42815 -26.67890 -26.41154 -25.73445 -23.95439 -23.42826 -21.99469 -20.69850 -20.20700 -19.04629 -18.88172 -18.49510 -18.27136 -17.81879 -17.55594 -17.13480 -16.76517 -16.42481 -16.37514 -16.09025 -15.82852 -15.63085 -15.47155 -14.98558 -14.92331 -14.79906 -14.54586 -14.38613 -14.32151 -13.86426 -13.58577 -13.50375 -13.22682 -13.19440 -13.13895 -13.09778 -12.81999 -12.75622 -12.42454 -12.23941 -12.14066 -12.11197 -11.92846 -11.68506 -11.46639 -11.40716 -10.96183 -10.87725 -10.52486 -9.65920 -9.52528 -8.98190 -7.94673 -5.22428 1.41808 1.48646 1.49414 1.58839 1.76468 2.44052 2.57310 2.78919 2.81362 3.25655 3.37475 3.39287 3.53968 3.63311 3.75733 3.79078 3.84172 3.88343 3.93095 3.97101 4.11886 4.20115 4.23092 4.28456 4.29570 4.42412 4.49593 4.54985 4.60651 4.70912 4.75475 4.78202 4.82778 4.88765 4.89391 4.97311 5.07335 5.15987 5.42612 5.48299 5.54342 5.66208 5.72982 5.98431 6.27892 6.36099 7.05279 7.34855 8.09976 8.33428 9.28528 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.002191 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.769033 B =12777.490684 C =13404.362514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.593 5.593 3 C 0.520 3.480 4 O -0.555 6.555 5 C 0.039 3.961 6 H 0.091 0.909 7 C 0.067 3.933 8 O -0.386 6.386 9 C 0.057 3.943 10 C 0.007 3.993 11 N -0.526 5.526 12 C -0.005 4.005 13 C 0.261 3.739 14 F -0.211 7.211 15 F -0.209 7.209 16 C 0.135 3.865 17 C -0.149 4.149 18 C 0.152 3.848 19 N -0.722 5.722 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.295 1.295 28 C -0.161 4.161 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.154 0.846 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.082 0.918 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 26.551 0.324 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.324 5.324 3 C 0.308 3.692 4 O -0.434 6.434 5 C -0.073 4.073 6 H 0.108 0.892 7 C -0.010 4.010 8 O -0.304 6.304 9 C -0.020 4.020 10 C -0.120 4.120 11 N -0.253 5.253 12 C -0.133 4.133 13 C 0.207 3.793 14 F -0.193 7.193 15 F -0.190 7.190 16 C 0.031 3.969 17 C -0.189 4.189 18 C 0.041 3.959 19 N -0.360 5.360 20 C -0.373 4.373 21 H 0.094 0.906 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.798 3.202 25 H -0.192 1.192 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.203 4.203 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.171 0.829 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.101 0.899 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.077 26.397 0.847 27.100 hybrid contribution -0.574 -1.060 -0.679 1.383 sum 5.503 25.337 0.168 25.928 Atomic orbital electron populations 1.22228 0.78031 1.04538 1.03356 1.47840 1.07853 1.04986 1.71749 1.20496 0.87665 0.85256 0.75783 1.90593 1.14914 1.87170 1.50714 1.22306 0.93584 0.89270 1.02093 0.89199 1.22947 0.96282 0.87347 0.94436 1.88027 1.33414 1.14224 1.94718 1.22919 0.92229 0.90230 0.96589 1.23390 0.98044 0.91494 0.99081 1.62054 1.18882 1.01959 1.42374 1.23635 0.98934 0.97556 0.93194 1.22328 0.87916 0.84289 0.84724 1.92937 1.67889 1.66796 1.91636 1.92976 1.83597 1.92495 1.49965 1.22263 0.97021 0.80631 0.96990 1.23768 1.02127 0.95725 0.97284 1.21629 0.92448 0.87384 0.94429 1.42493 1.19239 1.05284 1.68990 1.19704 1.01769 0.86471 1.29367 0.90628 1.25499 0.96844 1.02001 1.02243 1.69794 1.09162 1.34382 1.48475 0.85144 0.77478 0.80575 0.76996 1.19172 1.22144 1.22244 1.24097 1.01190 0.95953 0.99029 0.90482 0.88712 0.90527 0.85222 0.92582 0.85907 0.92384 0.93009 0.87820 0.86200 0.91135 0.82880 0.87211 0.91237 0.89958 0.90552 0.79197 0.94036 0.89914 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 7.41 127.77 0.95 2.02 16 2 N -0.59 -13.62 3.08 -819.64 -2.53 -16.15 16 3 C 0.52 12.53 6.81 87.66 0.60 13.12 16 4 O -0.56 -16.70 13.24 -3.04 -0.04 -16.74 16 5 C 0.04 0.76 1.51 44.18 0.07 0.82 16 6 H 0.09 1.52 7.39 -2.39 -0.02 1.50 16 7 C 0.07 1.20 5.89 72.02 0.42 1.63 16 8 O -0.39 -7.24 10.83 -148.98 -1.61 -8.86 16 9 C 0.06 0.90 7.01 72.01 0.50 1.40 16 10 C 0.01 0.12 4.16 86.31 0.36 0.48 16 11 N -0.53 -10.54 4.38 -874.39 -3.83 -14.37 16 12 C -0.01 -0.09 4.98 86.30 0.43 0.34 16 13 C 0.26 3.73 5.13 71.98 0.37 4.10 16 14 F -0.21 -3.28 13.95 44.97 0.63 -2.66 16 15 F -0.21 -4.12 16.23 44.97 0.73 -3.39 16 16 C 0.14 3.68 4.20 45.52 0.19 3.87 16 17 C -0.15 -4.48 7.37 31.12 0.23 -4.25 16 18 C 0.15 5.56 4.48 45.52 0.20 5.77 16 19 N -0.72 -34.40 5.40 -320.48 -1.73 -36.14 16 20 C -0.24 -12.91 9.97 84.03 0.84 -12.07 16 21 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 23 N -0.97 -57.30 13.06 21.65 0.28 -57.02 16 24 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 28 C -0.16 -4.99 7.31 31.12 0.23 -4.76 16 29 H 0.08 1.20 7.02 -2.38 -0.02 1.18 16 30 H 0.09 1.25 5.97 -2.39 -0.01 1.23 16 31 H 0.08 1.57 6.34 -2.39 -0.02 1.56 16 32 H 0.13 1.88 4.63 -2.39 -0.01 1.87 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.86 7.83 -2.39 -0.02 0.84 16 37 H 0.10 1.78 4.96 -2.39 -0.01 1.77 16 38 H 0.12 2.64 5.75 -2.39 -0.01 2.63 16 39 H 0.07 1.10 7.99 -2.39 -0.02 1.08 16 40 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 3.19 7.23 -2.39 -0.02 3.17 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.08 2.49 6.90 -2.39 -0.02 2.47 16 44 H 0.08 2.83 8.10 -2.39 -0.02 2.82 16 45 H 0.38 19.04 7.92 -92.70 -0.73 18.30 16 46 H 0.25 14.44 8.31 -92.72 -0.77 13.67 16 47 H 0.08 2.61 6.73 -2.38 -0.02 2.59 16 48 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -67.59 372.54 0.05 -67.53 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.27 Total: 31.82 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.85 Total: 8.84 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -7.80 Total: -123.67 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.65 Total: -25.60 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 1.36 Total: -6.05 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.59 0.05 -67.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999175016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.544 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds