Wall clock time and date at job start Wed Apr 1 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99618 * 2 1 4 4 C 1.39193 * 111.00227 * 236.05006 * 2 1 3 5 5 C 1.39144 * 119.93793 * 59.71820 * 4 2 1 6 6 C 1.37652 * 120.09577 * 179.72479 * 5 4 2 7 7 C 1.39774 * 119.96788 * 0.55911 * 6 5 4 8 8 C 1.47524 * 120.06416 * 179.74784 * 7 6 5 9 9 O 1.21594 * 120.00149 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99781 * 359.96814 * 8 7 6 11 11 C 1.46497 * 119.99748 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47012 * 180.02562 * 11 10 8 13 13 C 1.29453 * 117.69794 * 94.99755 * 12 11 10 14 14 C 1.50321 * 123.65233 * 180.85745 * 13 12 11 15 15 N 1.47004 * 109.16650 * 349.02416 * 14 13 12 16 16 C 1.36934 * 121.37860 * 222.96527 * 15 14 13 17 17 H 1.07997 * 120.00201 * 155.96668 * 16 15 14 18 18 C 1.38810 * 119.99928 * 335.97713 * 16 15 14 19 19 N 1.31619 * 119.99791 * 344.51041 * 18 16 15 20 20 Si 1.86796 * 120.00335 * 164.51173 * 18 16 15 21 21 H 1.48507 * 109.46896 * 89.99623 * 20 18 16 22 22 H 1.48494 * 109.47503 * 209.99873 * 20 18 16 23 23 H 1.48498 * 109.47083 * 330.00090 * 20 18 16 24 24 C 1.47349 * 117.24780 * 42.94652 * 15 14 13 25 25 C 1.49972 * 117.68880 * 274.73855 * 12 11 10 26 26 C 1.39812 * 119.87241 * 359.71283 * 7 6 5 27 27 C 1.37790 * 119.90478 * 0.02562 * 26 7 6 28 28 F 1.35098 * 119.98227 * 179.97438 * 27 26 7 29 29 H 1.09001 * 109.46921 * 183.95634 * 1 2 3 30 30 H 1.08994 * 109.47697 * 63.95468 * 1 2 3 31 31 H 1.09000 * 109.46959 * 303.95326 * 1 2 3 32 32 H 1.08998 * 109.47795 * 56.04555 * 3 2 1 33 33 H 1.09000 * 109.47295 * 176.05141 * 3 2 1 34 34 H 1.09003 * 109.47078 * 296.04229 * 3 2 1 35 35 H 1.08001 * 119.95022 * 0.02562 * 5 4 2 36 36 H 1.07997 * 120.01630 * 180.27128 * 6 5 4 37 37 H 0.96997 * 119.99638 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.46888 * 299.99854 * 11 10 8 39 39 H 1.08996 * 109.47153 * 59.99911 * 11 10 8 40 40 H 1.08001 * 118.16866 * 0.88255 * 13 12 11 41 41 H 1.09000 * 109.51768 * 108.92680 * 14 13 12 42 42 H 1.08995 * 109.52337 * 229.11606 * 14 13 12 43 43 H 0.97002 * 119.99871 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.77602 * 57.81182 * 24 15 14 45 45 H 1.09000 * 109.77269 * 178.61734 * 24 15 14 46 46 H 1.08998 * 109.31624 * 281.28956 * 25 12 11 47 47 H 1.09000 * 109.31418 * 40.72082 * 25 12 11 48 48 H 1.08009 * 120.04654 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9679 -0.7257 -1.0779 5 6 1.6491 -0.3457 -2.3780 6 6 2.1453 -1.0577 -3.4465 7 6 2.9610 -2.1709 -3.2254 8 6 3.4894 -2.9388 -4.3689 9 8 4.1992 -3.9068 -4.1753 10 7 3.1851 -2.5673 -5.6283 11 6 3.7093 -3.3302 -6.7638 12 6 3.2257 -2.7121 -8.0504 13 6 4.0052 -1.8637 -8.6406 14 6 3.6499 -1.1548 -9.9177 15 7 2.4438 -1.7690 -10.4913 16 6 2.3434 -2.0257 -11.8326 17 1 1.6712 -2.7932 -12.1867 18 6 3.1059 -1.2996 -12.7371 19 7 3.6857 -0.1800 -12.3595 20 14 3.3092 -1.9114 -14.4903 21 1 2.2242 -1.3547 -15.3378 22 1 4.6253 -1.4714 -15.0188 23 1 3.2395 -3.3947 -14.5082 24 6 1.3475 -2.0976 -9.5632 25 6 1.8777 -3.1278 -8.5596 26 6 3.2758 -2.5550 -1.9185 27 6 2.7807 -1.8353 -0.8528 28 9 3.0835 -2.2054 0.4107 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3634 0.4512 -0.9232 31 1 -0.3633 0.5740 0.8524 32 1 1.5897 1.9164 0.8524 33 1 3.0827 1.3434 0.0708 34 1 1.7043 1.8723 -0.9234 35 1 1.0154 0.5120 -2.5490 36 1 1.9006 -0.7590 -4.4551 37 1 2.6190 -1.7950 -5.7827 38 1 4.7990 -3.3139 -6.7404 39 1 3.3599 -4.3608 -6.7015 40 1 4.9643 -1.6540 -8.1907 41 1 3.4584 -0.1022 -9.7087 42 1 4.4748 -1.2425 -10.6246 43 1 4.2183 0.3276 -12.9917 44 1 1.0260 -1.1977 -9.0388 45 1 0.5100 -2.5215 -10.1172 46 1 1.9599 -4.1003 -9.0451 47 1 1.1836 -3.2033 -7.7226 48 1 3.9062 -3.4146 -1.7444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001476606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:42 Heat of formation + Delta-G solvation = 0.932608 kcal Electronic energy + Delta-G solvation = -29569.912774 eV Core-core repulsion = 25347.646130 eV Total energy + Delta-G solvation = -4222.266644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -49.06616 -40.61494 -39.41579 -37.86596 -36.72252 -35.08782 -33.04855 -31.25695 -31.02906 -30.39592 -29.73342 -28.10708 -27.17465 -25.58375 -24.10624 -23.14839 -22.83609 -22.31603 -21.17494 -20.57695 -18.76200 -17.68775 -17.20033 -17.02928 -16.51489 -16.13831 -15.75876 -15.68143 -15.34722 -15.11659 -14.96134 -14.85344 -14.52241 -14.30342 -13.91983 -13.72203 -13.50047 -13.41999 -13.13459 -13.10052 -12.93714 -12.46937 -12.38051 -12.23828 -12.18496 -12.05253 -11.76398 -11.63004 -11.43045 -10.96715 -10.76974 -10.48392 -10.37799 -10.15726 -9.88710 -9.66689 -9.45137 -9.18251 -9.10989 -8.96532 -8.74103 -8.14009 -6.80898 -5.85601 -3.24374 0.24024 0.75431 2.46930 2.47186 3.20196 3.34066 3.35101 3.38565 3.41651 3.43966 3.90382 4.28033 4.44659 4.45065 4.56101 4.63818 4.77735 4.80711 4.98563 5.00383 5.06445 5.18213 5.28453 5.34081 5.38311 5.39563 5.44398 5.51617 5.55427 5.70874 5.75039 5.76159 5.88340 6.00118 6.09421 6.16518 6.25563 6.27602 6.33876 6.44794 6.66094 6.76014 6.79685 7.08964 7.18260 7.24672 7.43725 7.66529 7.75944 8.07100 8.32103 9.13599 9.76285 10.33852 11.24948 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.001941 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.577539 B =14423.742604 C =15124.194447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.511 5.511 3 C 0.027 3.973 4 C 0.073 3.927 5 C -0.128 4.128 6 C -0.085 4.085 7 C -0.103 4.103 8 C 0.554 3.446 9 O -0.537 6.537 10 N -0.712 5.712 11 C 0.157 3.843 12 C -0.169 4.169 13 C -0.122 4.122 14 C 0.193 3.807 15 N -0.595 5.595 16 C -0.246 4.246 17 H 0.069 0.931 18 C -0.001 4.001 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.092 4.092 27 C 0.117 3.883 28 F -0.124 7.124 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.401 0.599 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.094 0.906 43 H 0.254 0.746 44 H 0.023 0.977 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 2.016 23.920 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.232 5.232 3 C -0.119 4.119 4 C -0.022 4.022 5 C -0.148 4.148 6 C -0.105 4.105 7 C -0.106 4.106 8 C 0.341 3.659 9 O -0.416 6.416 10 N -0.363 5.363 11 C 0.035 3.965 12 C -0.169 4.169 13 C -0.143 4.143 14 C 0.068 3.932 15 N -0.318 5.318 16 C -0.376 4.376 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.017 3.983 25 C -0.129 4.129 26 C -0.112 4.112 27 C 0.096 3.904 28 F -0.102 7.102 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.237 0.763 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.311 1.187 24.401 24.807 hybrid contribution -0.271 0.515 -1.464 1.575 sum -4.581 1.703 22.937 23.452 Atomic orbital electron populations 1.22507 0.85051 1.03103 1.01347 1.59382 1.09077 1.14680 1.40047 1.22502 1.01304 0.86782 1.01346 1.18940 0.98170 0.95006 0.90094 1.21454 1.00824 1.00736 0.91754 1.21287 0.95639 0.93801 0.99739 1.19857 1.00335 0.97108 0.93349 1.18061 0.80789 0.84177 0.82917 1.90798 1.37716 1.27649 1.85411 1.46122 1.52224 1.32773 1.05196 1.20521 0.98236 0.94971 0.82809 1.20493 0.98609 1.01743 0.96083 1.23317 0.97254 0.95172 0.98540 1.19768 0.90997 0.93165 0.89225 1.44129 1.11747 1.72535 1.03429 1.19164 1.23580 1.13430 0.81405 0.91361 1.24989 1.01530 0.95414 0.97975 1.70001 1.36905 1.13776 1.34824 0.86256 0.77280 0.78463 0.84561 1.21413 1.21540 1.20509 1.20992 0.91321 0.94681 0.91282 1.20796 0.93099 1.00591 0.98459 1.21202 0.99545 1.00282 0.90205 1.17345 0.98656 0.94795 0.79562 1.91525 1.91297 1.90617 1.36790 0.90895 0.94571 0.90426 0.90416 0.90899 0.94580 0.84557 0.84547 0.76307 0.91348 0.91261 0.88705 0.94058 0.88817 0.93569 0.95909 0.92426 0.91628 0.92913 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.33 60.06 0.56 0.72 16 2 N -0.51 -4.14 4.80 -186.79 -0.90 -5.03 16 3 C 0.03 0.17 9.38 60.06 0.56 0.73 16 4 C 0.07 0.67 4.73 -83.76 -0.40 0.27 16 5 C -0.13 -0.99 8.53 -39.46 -0.34 -1.32 16 6 C -0.09 -0.72 9.53 -39.22 -0.37 -1.09 16 7 C -0.10 -1.11 5.88 -104.95 -0.62 -1.73 16 8 C 0.55 7.32 7.76 -12.47 -0.10 7.23 16 9 O -0.54 -8.94 16.34 5.28 0.09 -8.86 16 10 N -0.71 -8.72 5.50 -62.53 -0.34 -9.06 16 11 C 0.16 2.22 5.66 -5.19 -0.03 2.19 16 12 C -0.17 -2.72 5.22 -100.99 -0.53 -3.25 16 13 C -0.12 -2.20 9.47 -35.78 -0.34 -2.54 16 14 C 0.19 4.38 5.23 -5.10 -0.03 4.36 16 15 N -0.60 -14.31 3.01 -173.56 -0.52 -14.83 16 16 C -0.25 -6.57 9.71 -15.06 -0.15 -6.72 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 18 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 19 N -0.91 -25.57 11.08 55.49 0.61 -24.95 16 20 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 C 0.14 2.81 6.59 -3.43 -0.02 2.79 16 25 C -0.09 -1.48 5.95 -28.09 -0.17 -1.65 16 26 C -0.09 -1.00 9.56 -39.16 -0.37 -1.37 16 27 C 0.12 1.23 7.30 -39.32 -0.29 0.94 16 28 F -0.12 -1.43 17.07 2.25 0.04 -1.39 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.19 7.08 -51.93 -0.37 -0.18 16 31 H 0.08 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.19 7.33 -51.93 -0.38 -0.19 16 35 H 0.14 0.79 6.99 -52.49 -0.37 0.42 16 36 H 0.14 0.91 6.39 -52.49 -0.34 0.58 16 37 H 0.40 4.15 6.48 -40.82 -0.26 3.88 16 38 H 0.07 1.01 7.78 -51.93 -0.40 0.60 16 39 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 40 H 0.09 1.53 7.73 -52.49 -0.41 1.13 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.15 1.67 7.64 -52.48 -0.40 1.27 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -31.13 394.70 -9.83 -40.96 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.02 Total: 1.51 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.70 Total: -0.56 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -1.15 Total: -53.88 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.13 -9.83 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001476606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.888 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds