Wall clock time and date at job start Wed Apr 1 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99618 * 2 1 4 4 C 1.39193 * 111.00227 * 236.05006 * 2 1 3 5 5 C 1.39144 * 119.93793 * 59.71820 * 4 2 1 6 6 C 1.37652 * 120.09577 * 179.72479 * 5 4 2 7 7 C 1.39774 * 119.96788 * 0.55911 * 6 5 4 8 8 C 1.47524 * 120.06416 * 179.74784 * 7 6 5 9 9 O 1.21594 * 120.00149 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99781 * 359.96814 * 8 7 6 11 11 C 1.46497 * 119.99748 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47012 * 180.02562 * 11 10 8 13 13 C 1.29453 * 117.69794 * 94.99755 * 12 11 10 14 14 C 1.50321 * 123.65233 * 180.85745 * 13 12 11 15 15 N 1.47004 * 109.16650 * 349.02416 * 14 13 12 16 16 C 1.36934 * 121.37860 * 222.96527 * 15 14 13 17 17 H 1.07997 * 120.00201 * 155.96668 * 16 15 14 18 18 C 1.38810 * 119.99928 * 335.97713 * 16 15 14 19 19 N 1.31619 * 119.99791 * 344.51041 * 18 16 15 20 20 Si 1.86796 * 120.00335 * 164.51173 * 18 16 15 21 21 H 1.48507 * 109.46896 * 89.99623 * 20 18 16 22 22 H 1.48494 * 109.47503 * 209.99873 * 20 18 16 23 23 H 1.48498 * 109.47083 * 330.00090 * 20 18 16 24 24 C 1.47349 * 117.24780 * 42.94652 * 15 14 13 25 25 C 1.49972 * 117.68880 * 274.73855 * 12 11 10 26 26 C 1.39812 * 119.87241 * 359.71283 * 7 6 5 27 27 C 1.37790 * 119.90478 * 0.02562 * 26 7 6 28 28 F 1.35098 * 119.98227 * 179.97438 * 27 26 7 29 29 H 1.09001 * 109.46921 * 183.95634 * 1 2 3 30 30 H 1.08994 * 109.47697 * 63.95468 * 1 2 3 31 31 H 1.09000 * 109.46959 * 303.95326 * 1 2 3 32 32 H 1.08998 * 109.47795 * 56.04555 * 3 2 1 33 33 H 1.09000 * 109.47295 * 176.05141 * 3 2 1 34 34 H 1.09003 * 109.47078 * 296.04229 * 3 2 1 35 35 H 1.08001 * 119.95022 * 0.02562 * 5 4 2 36 36 H 1.07997 * 120.01630 * 180.27128 * 6 5 4 37 37 H 0.96997 * 119.99638 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.46888 * 299.99854 * 11 10 8 39 39 H 1.08996 * 109.47153 * 59.99911 * 11 10 8 40 40 H 1.08001 * 118.16866 * 0.88255 * 13 12 11 41 41 H 1.09000 * 109.51768 * 108.92680 * 14 13 12 42 42 H 1.08995 * 109.52337 * 229.11606 * 14 13 12 43 43 H 0.97002 * 119.99871 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.77602 * 57.81182 * 24 15 14 45 45 H 1.09000 * 109.77269 * 178.61734 * 24 15 14 46 46 H 1.08998 * 109.31624 * 281.28956 * 25 12 11 47 47 H 1.09000 * 109.31418 * 40.72082 * 25 12 11 48 48 H 1.08009 * 120.04654 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9679 -0.7257 -1.0779 5 6 1.6491 -0.3457 -2.3780 6 6 2.1453 -1.0577 -3.4465 7 6 2.9610 -2.1709 -3.2254 8 6 3.4894 -2.9388 -4.3689 9 8 4.1992 -3.9068 -4.1753 10 7 3.1851 -2.5673 -5.6283 11 6 3.7093 -3.3302 -6.7638 12 6 3.2257 -2.7121 -8.0504 13 6 4.0052 -1.8637 -8.6406 14 6 3.6499 -1.1548 -9.9177 15 7 2.4438 -1.7690 -10.4913 16 6 2.3434 -2.0257 -11.8326 17 1 1.6712 -2.7932 -12.1867 18 6 3.1059 -1.2996 -12.7371 19 7 3.6857 -0.1800 -12.3595 20 14 3.3092 -1.9114 -14.4903 21 1 2.2242 -1.3547 -15.3378 22 1 4.6253 -1.4714 -15.0188 23 1 3.2395 -3.3947 -14.5082 24 6 1.3475 -2.0976 -9.5632 25 6 1.8777 -3.1278 -8.5596 26 6 3.2758 -2.5550 -1.9185 27 6 2.7807 -1.8353 -0.8528 28 9 3.0835 -2.2054 0.4107 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3634 0.4512 -0.9232 31 1 -0.3633 0.5740 0.8524 32 1 1.5897 1.9164 0.8524 33 1 3.0827 1.3434 0.0708 34 1 1.7043 1.8723 -0.9234 35 1 1.0154 0.5120 -2.5490 36 1 1.9006 -0.7590 -4.4551 37 1 2.6190 -1.7950 -5.7827 38 1 4.7990 -3.3139 -6.7404 39 1 3.3599 -4.3608 -6.7015 40 1 4.9643 -1.6540 -8.1907 41 1 3.4584 -0.1022 -9.7087 42 1 4.4748 -1.2425 -10.6246 43 1 4.2183 0.3276 -12.9917 44 1 1.0260 -1.1977 -9.0388 45 1 0.5100 -2.5215 -10.1172 46 1 1.9599 -4.1003 -9.0451 47 1 1.1836 -3.2033 -7.7226 48 1 3.9062 -3.4146 -1.7444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001476606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:37 Heat of formation + Delta-G solvation = -17.727883 kcal Electronic energy + Delta-G solvation = -29570.721954 eV Core-core repulsion = 25347.646130 eV Total energy + Delta-G solvation = -4223.075824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.88888 -41.47803 -40.29174 -39.32116 -37.44798 -36.47864 -34.61818 -32.76883 -31.78917 -31.51387 -31.16032 -28.59497 -28.55024 -26.62948 -25.47974 -24.36637 -23.86928 -23.21473 -22.69489 -21.49018 -19.75714 -19.37404 -17.96601 -17.81484 -17.52479 -17.18297 -16.92339 -16.86835 -16.71001 -16.28465 -15.78069 -15.71594 -15.43724 -15.39745 -15.23092 -15.18487 -14.92528 -14.49542 -14.13452 -13.98099 -13.80147 -13.67592 -13.41972 -13.26064 -13.01348 -12.99364 -12.85128 -12.78637 -12.65802 -12.57461 -12.46379 -12.24001 -12.10480 -11.69956 -11.33841 -11.18070 -10.67791 -10.28875 -10.09757 -9.78214 -9.66086 -9.62155 -8.73780 -7.88219 -5.28684 -0.52646 0.03930 1.15488 1.46815 1.49102 1.57831 1.59169 2.23962 2.51592 2.55215 2.66525 3.17548 3.29322 3.58678 3.61801 3.64236 3.85643 3.91913 3.98028 4.01550 4.16846 4.38063 4.42506 4.44635 4.55484 4.57608 4.60007 4.63325 4.73462 4.81446 4.85113 4.86932 4.93372 4.95962 4.97975 5.03525 5.05846 5.11782 5.22955 5.28191 5.41466 5.46947 5.49886 5.62450 5.77568 5.80566 6.15320 6.16908 6.34761 6.44633 7.07682 7.14517 7.84846 8.37794 9.20265 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.001941 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.577539 B =14423.742604 C =15124.194447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.531 5.531 3 C 0.026 3.974 4 C 0.082 3.918 5 C -0.120 4.120 6 C -0.071 4.071 7 C -0.117 4.117 8 C 0.557 3.443 9 O -0.577 6.577 10 N -0.702 5.702 11 C 0.166 3.834 12 C -0.139 4.139 13 C -0.140 4.140 14 C 0.204 3.796 15 N -0.616 5.616 16 C -0.255 4.255 17 H 0.070 0.930 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.273 1.273 24 C 0.138 3.862 25 C -0.085 4.085 26 C -0.098 4.098 27 C 0.097 3.903 28 F -0.136 7.136 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.413 0.587 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.017 0.983 42 H 0.056 0.944 43 H 0.249 0.751 44 H 0.032 0.968 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 2.338 24.957 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.252 5.252 3 C -0.120 4.120 4 C -0.014 4.014 5 C -0.140 4.140 6 C -0.090 4.090 7 C -0.120 4.120 8 C 0.346 3.654 9 O -0.459 6.459 10 N -0.353 5.353 11 C 0.043 3.957 12 C -0.140 4.140 13 C -0.160 4.160 14 C 0.079 3.921 15 N -0.340 5.340 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.249 4.249 19 N -0.585 5.585 20 Si 0.794 3.206 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.198 1.198 24 C 0.013 3.987 25 C -0.123 4.123 26 C -0.118 4.118 27 C 0.077 3.923 28 F -0.114 7.114 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.075 1.518 25.460 26.218 hybrid contribution 0.163 0.431 -1.684 1.746 sum -5.912 1.949 23.776 24.577 Atomic orbital electron populations 1.22569 0.83724 1.03065 1.02705 1.59395 1.10329 1.15644 1.39852 1.22556 1.00796 0.85949 1.02670 1.19110 0.96968 0.94178 0.91149 1.21713 1.00455 1.01100 0.90728 1.21513 0.94034 0.92371 1.01122 1.19651 1.01991 0.98262 0.92112 1.18345 0.79979 0.83660 0.83447 1.90782 1.39603 1.29529 1.85938 1.45908 1.52115 1.32872 1.04431 1.20301 0.98114 0.95060 0.82195 1.20580 0.97829 0.99536 0.96068 1.22972 0.98926 0.96927 0.97167 1.19410 0.89575 0.92671 0.90421 1.44416 1.13477 1.72680 1.03418 1.19486 1.23056 1.12990 0.82985 0.91269 1.25707 1.01947 0.95771 1.01484 1.70153 1.37837 1.14871 1.35668 0.85303 0.76731 0.78123 0.80469 1.21124 1.22058 1.19790 1.21194 0.90356 0.95853 0.91278 1.20738 0.93756 0.99079 0.98763 1.21134 0.99740 1.00235 0.90713 1.17512 0.99923 0.95874 0.79007 1.91488 1.91592 1.90891 1.37472 0.91691 0.93212 0.89054 0.88990 0.91859 0.93327 0.81783 0.82261 0.74872 0.91707 0.90941 0.86915 0.96567 0.92604 0.94150 0.95011 0.92343 0.91917 0.89193 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.33 127.69 1.19 1.43 16 2 N -0.53 -7.45 4.80 -744.88 -3.58 -11.02 16 3 C 0.03 0.26 9.38 127.69 1.20 1.46 16 4 C 0.08 1.32 4.73 38.47 0.18 1.50 16 5 C -0.12 -1.46 8.53 22.35 0.19 -1.26 16 6 C -0.07 -0.97 9.53 22.50 0.21 -0.76 16 7 C -0.12 -2.33 5.88 -20.08 -0.12 -2.45 16 8 C 0.56 13.88 7.76 86.69 0.67 14.55 16 9 O -0.58 -18.95 16.34 -4.01 -0.07 -19.01 16 10 N -0.70 -15.30 5.50 -470.01 -2.58 -17.88 16 11 C 0.17 4.30 5.66 85.63 0.48 4.79 16 12 C -0.14 -4.18 5.22 -15.13 -0.08 -4.26 16 13 C -0.14 -4.89 9.47 27.11 0.26 -4.64 16 14 C 0.20 9.44 5.23 85.42 0.45 9.89 16 15 N -0.62 -29.63 3.01 -703.02 -2.11 -31.74 16 16 C -0.26 -13.67 9.71 84.03 0.82 -12.86 16 17 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 18 C -0.05 -2.97 5.01 84.86 0.43 -2.55 16 19 N -0.94 -54.19 11.08 21.65 0.24 -53.95 16 20 Si 0.97 44.30 29.58 68.60 2.03 46.33 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 C 0.14 5.18 6.59 86.31 0.57 5.75 16 25 C -0.08 -2.53 5.95 29.72 0.18 -2.35 16 26 C -0.10 -2.10 9.56 22.54 0.22 -1.89 16 27 C 0.10 1.99 7.30 22.44 0.16 2.16 16 28 F -0.14 -3.17 17.07 44.97 0.77 -2.41 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.34 7.08 -2.39 -0.02 0.32 16 31 H 0.09 0.61 8.12 -2.39 -0.02 0.59 16 32 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.36 7.33 -2.39 -0.02 0.34 16 35 H 0.16 1.11 6.99 -2.91 -0.02 1.09 16 36 H 0.16 1.42 6.39 -2.91 -0.02 1.40 16 37 H 0.41 7.03 6.48 -92.71 -0.60 6.43 16 38 H 0.06 1.78 7.78 -2.38 -0.02 1.76 16 39 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 40 H 0.11 3.53 7.73 -2.91 -0.02 3.51 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 2.97 6.41 -2.39 -0.02 2.96 16 43 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.14 3.25 7.64 -2.91 -0.02 3.23 16 Total: -1.00 -69.19 394.70 2.09 -67.11 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.38 Total: 14.07 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 7.01 Total: 8.51 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -8.03 Total: -114.60 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.07 Total: -19.01 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.77 Total: -2.41 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.19 2.09 -67.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001476606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.381 kcal (2) G-P(sol) polarization free energy of solvation -69.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds