Wall clock time and date at job start Wed Apr 1 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 120.00135 * 2 1 4 4 H 1.08001 * 119.99965 * 203.82035 * 3 2 1 5 5 C 1.38811 * 119.99980 * 23.82120 * 3 2 1 6 6 N 1.31623 * 119.99915 * 11.32073 * 5 3 2 7 7 Si 1.86799 * 120.00275 * 191.32443 * 5 3 2 8 8 H 1.48508 * 109.46797 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47277 * 119.99623 * 7 5 3 10 10 H 1.48500 * 109.47050 * 240.00113 * 7 5 3 11 11 C 1.46498 * 119.99565 * 180.27213 * 2 1 3 12 12 H 1.09002 * 109.49583 * 179.66694 * 11 2 1 13 13 C 1.53045 * 109.50189 * 299.72289 * 11 2 1 14 14 C 1.53039 * 109.53849 * 181.31739 * 13 11 2 15 15 C 1.53191 * 109.31412 * 298.63649 * 14 13 11 16 16 N 1.46927 * 108.77288 * 54.63663 * 15 14 13 17 17 C 1.34775 * 120.62629 * 126.38852 * 16 15 14 18 18 O 1.21286 * 119.99617 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00304 * 0.02562 * 17 16 15 20 20 H 1.08999 * 109.09774 * 39.10783 * 19 17 16 21 21 C 1.53331 * 109.10289 * 279.99481 * 19 17 16 22 22 C 1.50667 * 107.88366 * 282.28584 * 21 19 17 23 23 C 1.33061 * 130.80651 * 152.70800 * 22 21 19 24 24 N 1.34740 * 108.03390 * 179.69236 * 23 22 21 25 25 C 1.30822 * 109.53825 * 0.04021 * 24 23 22 26 26 N 1.35043 * 108.33903 * 0.23186 * 25 24 23 27 27 C 1.34570 * 131.29373 * 179.07735 * 26 25 24 28 28 O 1.21493 * 120.70384 * 9.61097 * 27 26 25 29 29 N 1.34836 * 118.59675 * 189.61699 * 27 26 25 30 30 C 1.46923 * 118.74106 * 306.38928 * 16 15 14 31 31 H 1.08998 * 109.47216 * 274.18434 * 1 2 3 32 32 H 1.08997 * 109.46961 * 34.18535 * 1 2 3 33 33 H 1.09004 * 109.47203 * 154.18267 * 1 2 3 34 34 H 0.97005 * 119.99537 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.46002 * 301.34798 * 13 11 2 36 36 H 1.09006 * 109.45502 * 61.30148 * 13 11 2 37 37 H 1.08999 * 109.49384 * 58.59213 * 14 13 11 38 38 H 1.09006 * 109.49532 * 178.65302 * 14 13 11 39 39 H 1.08997 * 109.58385 * 174.42331 * 15 14 13 40 40 H 1.08993 * 109.58821 * 294.85026 * 15 14 13 41 41 H 1.09004 * 109.78108 * 41.88409 * 21 19 17 42 42 H 1.09005 * 109.77717 * 162.63508 * 21 19 17 43 43 H 1.07996 * 125.98315 * 359.69726 * 23 22 21 44 44 H 1.07999 * 125.82951 * 180.24980 * 25 24 23 45 45 H 0.96997 * 118.55787 * 191.80204 * 29 27 26 46 46 H 1.09000 * 109.58355 * 293.82346 * 30 16 15 47 47 H 1.08997 * 109.58628 * 173.39911 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1607 1.2257 -0.3777 5 6 1.5444 2.3368 0.4855 6 7 0.4089 2.2546 1.1461 7 14 2.3411 4.0023 0.2013 8 1 3.6025 3.8238 -0.5620 9 1 1.4142 4.8694 -0.5693 10 1 2.6406 4.6375 1.5098 11 6 2.1974 -1.2687 -0.0060 12 1 3.2692 -1.0701 -0.0111 13 6 1.8334 -2.0748 1.2430 14 6 2.6227 -3.3858 1.2542 15 6 2.2496 -4.2124 0.0196 16 7 2.4604 -3.3914 -1.1805 17 6 3.2270 -3.8407 -2.1939 18 8 3.3929 -3.1536 -3.1795 19 6 3.8772 -5.1972 -2.1028 20 1 3.1823 -5.8951 -1.6358 21 6 5.1394 -5.0917 -1.2387 22 6 6.2263 -4.4752 -2.0806 23 6 7.2889 -3.7525 -1.7357 24 7 7.9634 -3.4399 -2.8595 25 6 7.3474 -3.9489 -3.8953 26 7 6.2495 -4.6024 -3.4580 27 6 5.2897 -5.2707 -4.1237 28 8 5.4095 -5.5116 -5.3085 29 7 4.1922 -5.6671 -3.4481 30 6 1.8196 -2.0714 -1.2549 31 1 -0.3633 0.0750 1.0249 32 1 -0.3633 0.8501 -0.5774 33 1 -0.3634 -0.9251 -0.4476 34 1 -0.0143 3.0590 1.4851 35 1 2.0785 -1.4955 2.1332 36 1 0.7656 -2.2939 1.2353 37 1 3.6905 -3.1676 1.2369 38 1 2.3809 -3.9484 2.1560 39 1 2.8799 -5.1003 -0.0298 40 1 1.2024 -4.5082 0.0807 41 1 4.9415 -4.4609 -0.3721 42 1 5.4452 -6.0849 -0.9097 43 1 7.5628 -3.4665 -0.7310 44 1 7.6632 -3.8617 -4.9244 45 1 3.5857 -6.2923 -3.8748 46 1 0.7372 -2.1926 -1.2977 47 1 2.1661 -1.5466 -2.1452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027505194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:59 Heat of formation + Delta-G solvation = 46.544845 kcal Electronic energy + Delta-G solvation = -32116.321025 eV Core-core repulsion = 27915.952237 eV Total energy + Delta-G solvation = -4200.368787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.30756 -40.55333 -39.46064 -37.79164 -36.35230 -35.25118 -33.33540 -32.61910 -32.07513 -31.42635 -29.60264 -28.47577 -26.08312 -25.80790 -24.63464 -24.20867 -23.44532 -21.82587 -21.72437 -20.59675 -19.44992 -18.79834 -18.28002 -17.66250 -17.22190 -16.80150 -16.52612 -16.13101 -15.54328 -15.18611 -15.01769 -14.72176 -14.34490 -14.23940 -14.14212 -13.83141 -13.77655 -13.59456 -13.18585 -13.04394 -12.79359 -12.77352 -12.44230 -12.37918 -12.03983 -11.22833 -11.12646 -11.03271 -10.90517 -10.74777 -10.58930 -10.48252 -10.43061 -10.40671 -10.39424 -10.18009 -9.94927 -9.82548 -9.43103 -8.84596 -8.71017 -8.48356 -6.80185 -5.76728 -3.24408 0.93080 1.89773 2.42324 2.56496 2.73867 2.96427 3.07394 3.36662 3.44600 3.47457 3.97959 4.02929 4.13495 4.38160 4.45657 4.52204 4.57688 4.72800 4.93684 4.97864 5.10102 5.13416 5.15858 5.37614 5.40036 5.43803 5.56883 5.63756 5.71965 5.84543 5.99633 6.04227 6.10334 6.24912 6.25651 6.37306 6.40793 6.48855 6.68522 6.81925 6.84024 6.90786 7.32364 7.35458 7.49727 7.67427 7.72448 7.78478 8.04870 8.35960 9.19251 9.81124 10.29094 11.27992 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.003270 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.503816 B = 8560.559556 C = 9442.512742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.133 4.133 15 C 0.102 3.898 16 N -0.598 5.598 17 C 0.492 3.508 18 O -0.525 6.525 19 C 0.119 3.881 20 H 0.129 0.871 21 C -0.053 4.053 22 C -0.036 4.036 23 C 0.015 3.985 24 N -0.481 5.481 25 C 0.256 3.744 26 N -0.454 5.454 27 C 0.737 3.263 28 O -0.531 6.531 29 N -0.705 5.705 30 C 0.096 3.904 31 H 0.031 0.969 32 H 0.042 0.958 33 H -0.003 1.003 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.181 0.819 44 H 0.219 0.781 45 H 0.424 0.576 46 H 0.066 0.934 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 -21.686 -0.524 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.061 3.939 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.171 4.171 15 C -0.021 4.021 16 N -0.332 5.332 17 C 0.277 3.723 18 O -0.400 6.400 19 C 0.009 3.991 20 H 0.147 0.853 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.127 4.127 24 N -0.198 5.198 25 C -0.027 4.027 26 N -0.159 5.159 27 C 0.439 3.561 28 O -0.403 6.403 29 N -0.361 5.361 30 C -0.027 4.027 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.016 0.984 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.199 0.801 44 H 0.236 0.764 45 H 0.263 0.737 46 H 0.084 0.916 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.799 -20.729 -1.679 21.880 hybrid contribution -0.888 0.390 -0.084 0.973 sum 5.912 -20.338 -1.763 21.253 Atomic orbital electron populations 1.20794 0.82615 0.95462 0.99372 1.43870 1.01798 1.00008 1.85683 1.19259 0.98789 0.85541 1.34943 0.91414 1.25014 0.97741 0.98553 0.98011 1.70068 1.18861 1.27253 1.39000 0.86193 0.78790 0.84199 0.77456 1.20233 1.21571 1.21657 1.20564 0.96499 0.86309 0.90539 0.91696 1.22133 0.99453 0.94569 1.01100 1.21948 1.01185 0.97573 0.96441 1.21891 1.01748 0.93354 0.85137 1.48203 1.48682 1.19198 1.17142 1.20799 0.79635 0.88319 0.83577 1.90764 1.60636 1.57538 1.31067 1.21146 0.98244 0.96045 0.83616 0.85318 1.20584 0.88753 1.03092 0.96767 1.21257 1.02088 1.07980 0.82963 1.21908 0.93082 0.99095 0.98587 1.70793 1.29274 1.22004 0.97763 1.25349 0.83380 0.93060 1.00880 1.43773 1.21178 1.42630 1.08338 1.15538 0.79538 0.76917 0.84152 1.91021 1.79197 1.57952 1.12117 1.44693 1.24521 1.49657 1.17204 1.22498 0.96868 0.81011 1.02318 0.95065 0.93898 0.98443 0.93793 0.91265 0.92395 0.91599 0.90945 0.90468 0.90920 0.86439 0.87572 0.80141 0.76443 0.73683 0.91626 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 8.04 59.85 0.48 4.28 16 2 N -0.59 -14.15 2.81 -173.35 -0.49 -14.64 16 3 C -0.26 -6.92 9.58 -15.06 -0.14 -7.06 16 4 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 5 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 6 N -0.91 -25.83 10.67 55.49 0.59 -25.23 16 7 Si 0.90 21.88 29.57 -169.99 -5.03 16.85 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 C 0.17 3.21 2.74 -67.81 -0.19 3.03 16 12 H 0.06 1.32 7.87 -51.93 -0.41 0.91 16 13 C -0.13 -2.04 5.15 -26.69 -0.14 -2.17 16 14 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 15 C 0.10 0.84 5.72 -3.71 -0.02 0.82 16 16 N -0.60 -7.47 2.97 -172.78 -0.51 -7.98 16 17 C 0.49 6.43 6.59 -10.99 -0.07 6.36 16 18 O -0.52 -9.64 15.45 5.55 0.09 -9.55 16 19 C 0.12 0.96 2.73 -69.21 -0.19 0.77 16 20 H 0.13 0.48 6.72 -51.93 -0.35 0.13 16 21 C -0.05 -0.37 5.44 -27.73 -0.15 -0.52 16 22 C -0.04 -0.40 6.39 -81.47 -0.52 -0.92 16 23 C 0.02 0.18 11.83 -18.07 -0.21 -0.04 16 24 N -0.48 -6.55 11.27 -14.82 -0.17 -6.71 16 25 C 0.26 3.26 12.53 -90.11 -1.13 2.13 16 26 N -0.45 -5.82 2.85 -64.88 -0.19 -6.01 16 27 C 0.74 9.69 7.91 -87.05 -0.69 9.00 16 28 O -0.53 -8.34 17.75 5.37 0.10 -8.24 16 29 N -0.70 -6.77 4.84 -60.06 -0.29 -7.06 16 30 C 0.10 1.63 5.78 -3.71 -0.02 1.61 16 31 H 0.03 0.79 7.38 -51.93 -0.38 0.40 16 32 H 0.04 1.11 7.29 -51.93 -0.38 0.73 16 33 H 0.00 -0.06 6.33 -51.93 -0.33 -0.39 16 34 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.90 7.72 -51.93 -0.40 0.50 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.34 5.00 -51.93 -0.26 0.08 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 0.71 7.20 -51.93 -0.37 0.33 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.22 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.42 3.07 8.90 -40.82 -0.36 2.70 16 46 H 0.07 1.11 6.48 -51.93 -0.34 0.77 16 47 H 0.09 1.80 7.00 -51.93 -0.36 1.43 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -36.76 372.02 -9.99 -46.74 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.45 Total: 0.38 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: -3.24 Total: 15.85 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -1.05 Total: -67.64 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.76 -9.99 -46.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.290 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds