Wall clock time and date at job start Wed Apr 1 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 120.00135 * 2 1 4 4 H 1.08001 * 119.99965 * 203.82035 * 3 2 1 5 5 C 1.38811 * 119.99980 * 23.82120 * 3 2 1 6 6 N 1.31623 * 119.99915 * 11.32073 * 5 3 2 7 7 Si 1.86799 * 120.00275 * 191.32443 * 5 3 2 8 8 H 1.48508 * 109.46797 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47277 * 119.99623 * 7 5 3 10 10 H 1.48500 * 109.47050 * 240.00113 * 7 5 3 11 11 C 1.46498 * 119.99565 * 180.27213 * 2 1 3 12 12 H 1.09002 * 109.49583 * 179.66694 * 11 2 1 13 13 C 1.53045 * 109.50189 * 299.72289 * 11 2 1 14 14 C 1.53039 * 109.53849 * 181.31739 * 13 11 2 15 15 C 1.53191 * 109.31412 * 298.63649 * 14 13 11 16 16 N 1.46927 * 108.77288 * 54.63663 * 15 14 13 17 17 C 1.34775 * 120.62629 * 126.38852 * 16 15 14 18 18 O 1.21286 * 119.99617 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00304 * 0.02562 * 17 16 15 20 20 H 1.08999 * 109.09774 * 39.10783 * 19 17 16 21 21 C 1.53331 * 109.10289 * 279.99481 * 19 17 16 22 22 C 1.50667 * 107.88366 * 282.28584 * 21 19 17 23 23 C 1.33061 * 130.80651 * 152.70800 * 22 21 19 24 24 N 1.34740 * 108.03390 * 179.69236 * 23 22 21 25 25 C 1.30822 * 109.53825 * 0.04021 * 24 23 22 26 26 N 1.35043 * 108.33903 * 0.23186 * 25 24 23 27 27 C 1.34570 * 131.29373 * 179.07735 * 26 25 24 28 28 O 1.21493 * 120.70384 * 9.61097 * 27 26 25 29 29 N 1.34836 * 118.59675 * 189.61699 * 27 26 25 30 30 C 1.46923 * 118.74106 * 306.38928 * 16 15 14 31 31 H 1.08998 * 109.47216 * 274.18434 * 1 2 3 32 32 H 1.08997 * 109.46961 * 34.18535 * 1 2 3 33 33 H 1.09004 * 109.47203 * 154.18267 * 1 2 3 34 34 H 0.97005 * 119.99537 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.46002 * 301.34798 * 13 11 2 36 36 H 1.09006 * 109.45502 * 61.30148 * 13 11 2 37 37 H 1.08999 * 109.49384 * 58.59213 * 14 13 11 38 38 H 1.09006 * 109.49532 * 178.65302 * 14 13 11 39 39 H 1.08997 * 109.58385 * 174.42331 * 15 14 13 40 40 H 1.08993 * 109.58821 * 294.85026 * 15 14 13 41 41 H 1.09004 * 109.78108 * 41.88409 * 21 19 17 42 42 H 1.09005 * 109.77717 * 162.63508 * 21 19 17 43 43 H 1.07996 * 125.98315 * 359.69726 * 23 22 21 44 44 H 1.07999 * 125.82951 * 180.24980 * 25 24 23 45 45 H 0.96997 * 118.55787 * 191.80204 * 29 27 26 46 46 H 1.09000 * 109.58355 * 293.82346 * 30 16 15 47 47 H 1.08997 * 109.58628 * 173.39911 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1607 1.2257 -0.3777 5 6 1.5444 2.3368 0.4855 6 7 0.4089 2.2546 1.1461 7 14 2.3411 4.0023 0.2013 8 1 3.6025 3.8238 -0.5620 9 1 1.4142 4.8694 -0.5693 10 1 2.6406 4.6375 1.5098 11 6 2.1974 -1.2687 -0.0060 12 1 3.2692 -1.0701 -0.0111 13 6 1.8334 -2.0748 1.2430 14 6 2.6227 -3.3858 1.2542 15 6 2.2496 -4.2124 0.0196 16 7 2.4604 -3.3914 -1.1805 17 6 3.2270 -3.8407 -2.1939 18 8 3.3929 -3.1536 -3.1795 19 6 3.8772 -5.1972 -2.1028 20 1 3.1823 -5.8951 -1.6358 21 6 5.1394 -5.0917 -1.2387 22 6 6.2263 -4.4752 -2.0806 23 6 7.2889 -3.7525 -1.7357 24 7 7.9634 -3.4399 -2.8595 25 6 7.3474 -3.9489 -3.8953 26 7 6.2495 -4.6024 -3.4580 27 6 5.2897 -5.2707 -4.1237 28 8 5.4095 -5.5116 -5.3085 29 7 4.1922 -5.6671 -3.4481 30 6 1.8196 -2.0714 -1.2549 31 1 -0.3633 0.0750 1.0249 32 1 -0.3633 0.8501 -0.5774 33 1 -0.3634 -0.9251 -0.4476 34 1 -0.0143 3.0590 1.4851 35 1 2.0785 -1.4955 2.1332 36 1 0.7656 -2.2939 1.2353 37 1 3.6905 -3.1676 1.2369 38 1 2.3809 -3.9484 2.1560 39 1 2.8799 -5.1003 -0.0298 40 1 1.2024 -4.5082 0.0807 41 1 4.9415 -4.4609 -0.3721 42 1 5.4452 -6.0849 -0.9097 43 1 7.5628 -3.4665 -0.7310 44 1 7.6632 -3.8617 -4.9244 45 1 3.5857 -6.2923 -3.8748 46 1 0.7372 -2.1926 -1.2977 47 1 2.1661 -1.5466 -2.1452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027505194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:56 Heat of formation + Delta-G solvation = 20.236464 kcal Electronic energy + Delta-G solvation = -32117.461842 eV Core-core repulsion = 27915.952237 eV Total energy + Delta-G solvation = -4201.509604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.17795 -41.54688 -40.45007 -39.05181 -37.29111 -36.82080 -34.32391 -33.95488 -32.92663 -32.84754 -30.87074 -29.60716 -28.07208 -26.79661 -25.56337 -25.37039 -24.74083 -23.02781 -22.60117 -21.75214 -20.52317 -19.88097 -19.23082 -18.75243 -18.51452 -18.10148 -17.51559 -17.11895 -17.01665 -16.32632 -16.09673 -15.75009 -15.68433 -15.41527 -15.17704 -15.09354 -14.86985 -14.66640 -14.46159 -14.12356 -13.86244 -13.81297 -13.65960 -13.48476 -13.21790 -12.89626 -12.82933 -12.54141 -12.28909 -12.16312 -12.04830 -11.91781 -11.78046 -11.70722 -11.47916 -11.37090 -11.35749 -11.33012 -10.70680 -10.36075 -9.74060 -9.64857 -8.75675 -7.86582 -5.35319 0.02778 1.05180 1.40460 1.43137 1.47002 1.52812 1.66998 1.85420 2.05814 2.22563 2.47584 3.25474 3.27041 3.38454 3.42277 3.62409 3.64055 3.79104 3.97789 4.01418 4.11081 4.18365 4.23668 4.25597 4.41371 4.48442 4.65294 4.66548 4.75616 4.80351 4.81061 4.91293 4.93161 5.06744 5.20745 5.29717 5.31530 5.46408 5.47087 5.51363 5.56445 5.58743 5.63973 5.72720 5.94325 6.30553 6.39609 6.62604 6.83572 7.07149 7.13131 7.84866 8.26067 9.15608 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.003270 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.503816 B = 8560.559556 C = 9442.512742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.264 4.264 4 H 0.057 0.943 5 C -0.044 4.044 6 N -0.932 5.932 7 Si 0.960 3.040 8 H -0.275 1.275 9 H -0.290 1.290 10 H -0.286 1.286 11 C 0.169 3.831 12 H 0.042 0.958 13 C -0.124 4.124 14 C -0.124 4.124 15 C 0.096 3.904 16 N -0.594 5.594 17 C 0.485 3.515 18 O -0.589 6.589 19 C 0.127 3.873 20 H 0.194 0.806 21 C -0.052 4.052 22 C -0.033 4.033 23 C -0.011 4.011 24 N -0.506 5.506 25 C 0.232 3.768 26 N -0.463 5.463 27 C 0.730 3.270 28 O -0.569 6.569 29 N -0.691 5.691 30 C 0.114 3.886 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.031 0.969 34 H 0.249 0.751 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.203 0.797 44 H 0.229 0.771 45 H 0.436 0.564 46 H 0.067 0.933 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 -25.483 1.454 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.334 5.334 3 C -0.395 4.395 4 H 0.075 0.925 5 C -0.239 4.239 6 N -0.578 5.578 7 Si 0.789 3.211 8 H -0.200 1.200 9 H -0.217 1.217 10 H -0.212 1.212 11 C 0.061 3.939 12 H 0.061 0.939 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.025 4.025 16 N -0.326 5.326 17 C 0.272 3.728 18 O -0.468 6.468 19 C 0.018 3.982 20 H 0.211 0.789 21 C -0.091 4.091 22 C -0.140 4.140 23 C -0.152 4.152 24 N -0.224 5.224 25 C -0.050 4.050 26 N -0.168 5.168 27 C 0.431 3.569 28 O -0.444 6.444 29 N -0.347 5.347 30 C -0.012 4.012 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.110 0.890 41 H 0.154 0.846 42 H 0.175 0.825 43 H 0.220 0.780 44 H 0.246 0.754 45 H 0.277 0.723 46 H 0.085 0.915 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.680 -24.599 0.354 25.492 hybrid contribution -0.839 1.581 -0.704 1.923 sum 5.841 -23.018 -0.350 23.750 Atomic orbital electron populations 1.20483 0.82613 0.95632 0.97675 1.44081 1.02123 1.01128 1.86074 1.19441 0.98537 0.87335 1.34156 0.92493 1.25646 0.98483 1.01358 0.98432 1.70196 1.19927 1.27609 1.40086 0.85308 0.77897 0.80622 0.77257 1.20007 1.21718 1.21239 1.20725 0.94637 0.85178 0.93379 0.93949 1.21945 1.00426 0.96786 0.97206 1.21934 1.00416 0.94765 0.99149 1.22338 1.04419 0.93837 0.81860 1.48239 1.47910 1.17632 1.18842 1.21859 0.78705 0.89843 0.82393 1.90758 1.62636 1.59771 1.33673 1.21510 0.99677 0.93749 0.83220 0.78946 1.20978 0.86297 1.05825 0.95970 1.22002 1.02611 1.06855 0.82509 1.22392 0.93785 0.99932 0.99046 1.70745 1.30315 1.22574 0.98795 1.25666 0.84025 0.93860 1.01493 1.43895 1.21065 1.42559 1.09311 1.15830 0.80369 0.76731 0.83988 1.90985 1.80122 1.59485 1.13787 1.44699 1.23299 1.48830 1.17858 1.21874 0.96955 0.83301 0.99026 0.97186 0.97297 0.95017 0.94172 0.94220 0.92420 0.91099 0.87228 0.84777 0.89029 0.84620 0.82547 0.77982 0.75445 0.72274 0.91489 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.69 8.04 127.77 1.03 9.71 16 2 N -0.61 -30.13 2.81 -702.34 -1.98 -32.11 16 3 C -0.26 -14.82 9.58 84.03 0.81 -14.02 16 4 H 0.06 3.24 7.82 -2.91 -0.02 3.22 16 5 C -0.04 -2.46 5.13 84.86 0.43 -2.03 16 6 N -0.93 -54.65 10.67 21.65 0.23 -54.42 16 7 Si 0.96 46.18 29.57 68.60 2.03 48.21 16 8 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 11 C 0.17 6.38 2.74 45.07 0.12 6.50 16 12 H 0.04 1.76 7.87 -2.39 -0.02 1.74 16 13 C -0.12 -3.59 5.15 30.62 0.16 -3.43 16 14 C -0.12 -1.82 6.08 30.67 0.19 -1.63 16 15 C 0.10 0.96 5.72 86.36 0.49 1.45 16 16 N -0.59 -12.84 2.97 -818.93 -2.43 -15.27 16 17 C 0.48 11.26 6.59 87.66 0.58 11.83 16 18 O -0.59 -21.60 15.45 -3.05 -0.05 -21.65 16 19 C 0.13 1.34 2.73 44.46 0.12 1.46 16 20 H 0.19 -0.31 6.72 -2.39 -0.02 -0.33 16 21 C -0.05 -0.41 5.44 29.95 0.16 -0.25 16 22 C -0.03 -0.65 6.39 40.36 0.26 -0.39 16 23 C -0.01 -0.23 11.83 83.09 0.98 0.75 16 24 N -0.51 -13.96 11.27 -200.82 -2.26 -16.22 16 25 C 0.23 6.09 12.53 180.17 2.26 8.35 16 26 N -0.46 -11.51 2.85 -477.59 -1.36 -12.87 16 27 C 0.73 18.38 7.91 179.10 1.42 19.80 16 28 O -0.57 -18.02 17.75 -3.69 -0.07 -18.08 16 29 N -0.69 -10.96 4.84 -462.21 -2.24 -13.20 16 30 C 0.11 3.79 5.78 86.36 0.50 4.29 16 31 H 0.01 0.51 7.38 -2.39 -0.02 0.50 16 32 H 0.01 0.45 7.29 -2.39 -0.02 0.43 16 33 H 0.03 1.27 6.33 -2.39 -0.02 1.25 16 34 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.67 7.72 -2.38 -0.02 1.65 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.13 -0.10 5.00 -2.39 -0.01 -0.11 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.14 0.70 7.20 -2.39 -0.02 0.68 16 42 H 0.16 -0.12 8.14 -2.38 -0.02 -0.14 16 43 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 44 H 0.23 4.95 8.06 -2.91 -0.02 4.93 16 45 H 0.44 4.74 8.90 -92.71 -0.83 3.92 16 46 H 0.07 2.19 6.48 -2.39 -0.02 2.18 16 47 H 0.04 1.90 7.00 -2.39 -0.02 1.88 16 Total: -1.00 -90.67 372.02 1.57 -89.10 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.19 Total: 4.12 kcal Atomic # 6 Polarization: 32.89 SS G_CDS: 9.51 Total: 42.40 kcal Atomic # 7 Polarization: -134.05 SS G_CDS: -10.04 Total: -144.10 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.11 Total: -39.73 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -90.67 1.57 -89.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.332 kcal (2) G-P(sol) polarization free energy of solvation -90.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds