Wall clock time and date at job start Wed Apr 1 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 119.99843 * 2 1 4 4 H 1.08004 * 119.99498 * 202.06021 * 3 2 1 5 5 C 1.38804 * 120.00356 * 22.06082 * 3 2 1 6 6 N 1.31627 * 120.00072 * 12.42668 * 5 3 2 7 7 Si 1.86803 * 120.00091 * 192.43066 * 5 3 2 8 8 H 1.48494 * 109.47068 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47197 * 120.00146 * 7 5 3 10 10 H 1.48507 * 109.47090 * 239.99650 * 7 5 3 11 11 C 1.46504 * 119.99873 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49428 * 180.02562 * 11 2 1 13 13 C 1.53034 * 109.49735 * 60.00398 * 11 2 1 14 14 C 1.53044 * 109.53930 * 178.68005 * 13 11 2 15 15 C 1.53197 * 109.30976 * 61.36623 * 14 13 11 16 16 N 1.46925 * 108.77453 * 305.36115 * 15 14 13 17 17 C 1.34767 * 120.63378 * 233.58579 * 16 15 14 18 18 O 1.21286 * 120.00304 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99842 * 0.02562 * 17 16 15 20 20 H 1.08996 * 109.09665 * 40.88817 * 19 17 16 21 21 C 1.53340 * 109.05404 * 281.80812 * 19 17 16 22 22 C 1.50673 * 107.87721 * 282.31461 * 21 19 17 23 23 C 1.33065 * 130.80149 * 152.72699 * 22 21 19 24 24 N 1.34736 * 108.03212 * 179.67717 * 23 22 21 25 25 C 1.30821 * 109.54302 * 0.03525 * 24 23 22 26 26 N 1.35046 * 108.33283 * 0.23731 * 25 24 23 27 27 C 1.34488 * 131.35198 * 179.36979 * 26 25 24 28 28 O 1.21493 * 120.62805 * 9.54948 * 27 26 25 29 29 N 1.34830 * 118.66412 * 189.77987 * 27 26 25 30 30 C 1.46928 * 118.73471 * 53.86540 * 16 15 14 31 31 H 1.08997 * 109.47524 * 274.30332 * 1 2 3 32 32 H 1.08990 * 109.47288 * 34.30786 * 1 2 3 33 33 H 1.09005 * 109.46933 * 154.31043 * 1 2 3 34 34 H 0.97000 * 119.99965 * 180.02562 * 6 5 3 35 35 H 1.09003 * 109.46492 * 58.66012 * 13 11 2 36 36 H 1.08999 * 109.45348 * 298.69634 * 13 11 2 37 37 H 1.08995 * 109.49645 * 301.41429 * 14 13 11 38 38 H 1.09000 * 109.52520 * 181.33154 * 14 13 11 39 39 H 1.09000 * 109.58251 * 185.57922 * 15 14 13 40 40 H 1.08993 * 109.58663 * 65.15043 * 15 14 13 41 41 H 1.08995 * 109.77638 * 41.91210 * 21 19 17 42 42 H 1.08996 * 109.77503 * 162.72241 * 21 19 17 43 43 H 1.07998 * 125.97816 * 359.67973 * 23 22 21 44 44 H 1.08000 * 125.83471 * 180.20760 * 25 24 23 45 45 H 0.96994 * 118.55428 * 191.54685 * 29 27 26 46 46 H 1.09001 * 109.58730 * 65.92562 * 30 16 15 47 47 H 1.08999 * 109.58724 * 186.34798 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1703 1.2201 -0.3513 5 6 1.5319 2.3440 0.4515 6 7 0.3899 2.2701 1.1020 7 14 2.3210 4.0075 0.1358 8 1 3.5913 3.8192 -0.6097 9 1 1.3967 4.8499 -0.6649 10 1 2.6024 4.6758 1.4318 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8283 -2.0723 -1.2484 14 6 2.6177 -3.3833 -1.2655 15 6 2.2496 -4.2124 -0.0310 16 7 2.4654 -3.3938 1.1699 17 6 3.2357 -3.8451 2.1794 18 8 3.4057 -3.1600 3.1656 19 6 3.8858 -5.2012 2.0828 20 1 4.2612 -5.3454 1.0697 21 6 2.8405 -6.2805 2.3890 22 6 2.6469 -6.3263 3.8825 23 6 1.5956 -6.6909 4.6122 24 7 1.9247 -6.5604 5.9122 25 6 3.1538 -6.1233 6.0107 26 7 3.6463 -5.9560 4.7644 27 6 4.8438 -5.5216 4.3331 28 8 5.7617 -5.3615 5.1128 29 7 5.0032 -5.2631 3.0195 30 6 1.8202 -2.0762 1.2519 31 1 -0.3634 0.0771 1.0247 32 1 -0.3633 0.8488 -0.5792 33 1 -0.3633 -0.9261 -0.4455 34 1 -0.0419 3.0795 1.4171 35 1 2.0698 -1.4914 -2.1386 36 1 0.7606 -2.2914 -1.2366 37 1 3.6855 -3.1652 -1.2522 38 1 2.3722 -3.9446 -2.1671 39 1 2.8802 -5.1003 0.0140 40 1 1.2021 -4.5080 -0.0884 41 1 1.8981 -6.0298 1.9023 42 1 3.1943 -7.2481 2.0331 43 1 0.6450 -7.0316 4.2294 44 1 3.6839 -5.9289 6.9314 45 1 5.9003 -5.1156 2.6815 46 1 0.7384 -2.2013 1.2970 47 1 2.1673 -1.5543 2.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027505197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:04 Heat of formation + Delta-G solvation = 47.097354 kcal Electronic energy + Delta-G solvation = -31915.087197 eV Core-core repulsion = 27714.742368 eV Total energy + Delta-G solvation = -4200.344829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.32593 -40.50879 -39.43918 -37.78106 -36.31539 -35.24607 -33.35006 -32.68621 -32.01932 -31.38831 -29.60790 -28.46933 -26.07898 -25.82075 -24.62987 -24.21065 -23.44391 -21.85466 -21.72844 -20.55725 -19.38385 -18.92763 -18.20301 -17.66789 -17.19994 -16.81682 -16.51803 -16.08517 -15.50165 -15.24283 -14.91022 -14.78210 -14.38160 -14.25174 -14.10331 -13.86536 -13.72155 -13.65819 -13.12683 -13.07248 -12.82923 -12.68653 -12.54129 -12.32424 -11.96560 -11.31364 -11.18413 -11.07070 -10.87253 -10.73038 -10.53307 -10.49152 -10.46184 -10.43106 -10.41981 -10.24836 -9.91048 -9.82922 -9.38534 -8.87210 -8.67490 -8.47170 -6.82886 -5.77554 -3.23835 0.92053 1.90921 2.49277 2.56709 2.72776 2.97040 3.09166 3.35662 3.42828 3.44692 3.98029 4.04437 4.15714 4.35739 4.43855 4.50710 4.55161 4.76730 4.92499 4.94237 5.07695 5.10242 5.15084 5.35414 5.39633 5.42383 5.53290 5.61624 5.76750 5.85378 5.97848 6.01789 6.11289 6.24942 6.27411 6.36191 6.38894 6.50774 6.68288 6.80966 6.83198 6.86685 7.32755 7.41117 7.48786 7.66706 7.72645 7.76848 8.11703 8.34173 9.17940 9.80259 10.27864 11.27179 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.002971 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.812893 B = 9421.044605 C = 9929.772200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.591 5.591 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.102 3.898 16 N -0.600 5.600 17 C 0.491 3.509 18 O -0.523 6.523 19 C 0.118 3.882 20 H 0.130 0.870 21 C -0.052 4.052 22 C -0.036 4.036 23 C 0.013 3.987 24 N -0.482 5.482 25 C 0.257 3.743 26 N -0.454 5.454 27 C 0.736 3.264 28 O -0.530 6.530 29 N -0.703 5.703 30 C 0.098 3.902 31 H 0.028 0.972 32 H 0.045 0.955 33 H -0.001 1.001 34 H 0.253 0.747 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.181 0.819 44 H 0.220 0.780 45 H 0.425 0.575 46 H 0.064 0.936 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -22.599 -3.544 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.021 4.021 16 N -0.334 5.334 17 C 0.275 3.725 18 O -0.398 6.398 19 C 0.008 3.992 20 H 0.148 0.852 21 C -0.091 4.091 22 C -0.143 4.143 23 C -0.129 4.129 24 N -0.200 5.200 25 C -0.026 4.026 26 N -0.158 5.158 27 C 0.437 3.563 28 O -0.402 6.402 29 N -0.359 5.359 30 C -0.025 4.025 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.198 0.802 44 H 0.236 0.764 45 H 0.264 0.736 46 H 0.082 0.918 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.975 -22.099 -1.798 22.526 hybrid contribution 1.080 1.384 -0.964 2.003 sum 5.056 -20.715 -2.762 21.501 Atomic orbital electron populations 1.20797 0.82481 0.95659 0.99342 1.43959 1.01904 1.00005 1.85404 1.19257 0.97909 0.85104 1.36483 0.91320 1.25029 0.97725 0.98582 0.98093 1.70079 1.18283 1.27070 1.39542 0.86175 0.78590 0.84181 0.77535 1.20320 1.21556 1.21653 1.20707 0.96448 0.86236 0.90604 0.91783 1.22100 0.99720 0.94891 1.00675 1.21912 1.01117 0.97384 0.96615 1.21881 1.01664 0.93418 0.85148 1.48323 1.48552 1.19469 1.17042 1.20802 0.79981 0.88073 0.83643 1.90777 1.60545 1.57723 1.30736 1.21166 0.88722 0.94236 0.95067 0.85218 1.20566 1.00227 0.99045 0.89249 1.21291 0.90830 1.09400 0.92825 1.21881 0.98677 1.03839 0.88549 1.70784 1.10972 1.18465 1.19768 1.25353 0.90850 0.98454 0.87910 1.43767 1.12826 1.50228 1.09004 1.15524 0.81265 0.76534 0.82952 1.91026 1.40158 1.55262 1.53718 1.44681 1.10970 1.74346 1.05917 1.22720 0.96672 0.80544 1.02560 0.95335 0.93639 0.98242 0.93695 0.91571 0.92119 0.91685 0.90976 0.90493 0.90832 0.86621 0.87596 0.80218 0.76410 0.73587 0.91812 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.91 59.85 0.47 4.26 16 2 N -0.59 -14.12 2.82 -173.10 -0.49 -14.61 16 3 C -0.26 -6.96 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 5 C 0.00 0.12 5.11 -17.43 -0.09 0.03 16 6 N -0.91 -26.17 10.63 55.49 0.59 -25.58 16 7 Si 0.91 21.81 29.57 -169.99 -5.03 16.79 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 C 0.17 3.20 2.76 -67.59 -0.19 3.01 16 12 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 13 C -0.13 -1.94 5.13 -26.69 -0.14 -2.07 16 14 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 15 C 0.10 0.84 5.48 -3.71 -0.02 0.82 16 16 N -0.60 -7.78 2.97 -172.50 -0.51 -8.29 16 17 C 0.49 6.72 6.60 -10.99 -0.07 6.65 16 18 O -0.52 -10.12 15.45 5.55 0.09 -10.04 16 19 C 0.12 0.99 2.74 -69.21 -0.19 0.80 16 20 H 0.13 0.56 6.57 -51.93 -0.34 0.22 16 21 C -0.05 -0.34 5.56 -27.72 -0.15 -0.50 16 22 C -0.04 -0.39 6.38 -81.47 -0.52 -0.91 16 23 C 0.01 0.14 11.83 -18.07 -0.21 -0.08 16 24 N -0.48 -6.31 11.27 -14.82 -0.17 -6.48 16 25 C 0.26 3.22 12.54 -90.10 -1.13 2.10 16 26 N -0.45 -5.81 2.85 -64.90 -0.19 -6.00 16 27 C 0.74 9.94 7.93 -87.13 -0.69 9.25 16 28 O -0.53 -8.58 17.75 5.37 0.10 -8.48 16 29 N -0.70 -7.18 4.82 -60.08 -0.29 -7.47 16 30 C 0.10 1.76 5.81 -3.49 -0.02 1.74 16 31 H 0.03 0.74 7.41 -51.93 -0.39 0.35 16 32 H 0.04 1.16 7.20 -51.93 -0.37 0.79 16 33 H 0.00 -0.02 6.46 -51.93 -0.34 -0.35 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.88 6.71 -51.93 -0.35 0.53 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.34 5.23 -51.93 -0.27 0.07 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.12 0.60 7.16 -51.93 -0.37 0.23 16 42 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.22 2.16 8.06 -52.49 -0.42 1.73 16 45 H 0.43 3.43 8.90 -40.82 -0.36 3.07 16 46 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 47 H 0.09 2.01 7.00 -51.93 -0.36 1.65 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -37.23 371.90 -10.01 -47.23 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.46 Total: 0.74 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: -3.26 Total: 16.58 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.05 Total: -68.43 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.23 -10.01 -47.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.330 kcal (2) G-P(sol) polarization free energy of solvation -37.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds