Wall clock time and date at job start Wed Apr 1 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 119.99843 * 2 1 4 4 H 1.08004 * 119.99498 * 202.06021 * 3 2 1 5 5 C 1.38804 * 120.00356 * 22.06082 * 3 2 1 6 6 N 1.31627 * 120.00072 * 12.42668 * 5 3 2 7 7 Si 1.86803 * 120.00091 * 192.43066 * 5 3 2 8 8 H 1.48494 * 109.47068 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47197 * 120.00146 * 7 5 3 10 10 H 1.48507 * 109.47090 * 239.99650 * 7 5 3 11 11 C 1.46504 * 119.99873 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49428 * 180.02562 * 11 2 1 13 13 C 1.53034 * 109.49735 * 60.00398 * 11 2 1 14 14 C 1.53044 * 109.53930 * 178.68005 * 13 11 2 15 15 C 1.53197 * 109.30976 * 61.36623 * 14 13 11 16 16 N 1.46925 * 108.77453 * 305.36115 * 15 14 13 17 17 C 1.34767 * 120.63378 * 233.58579 * 16 15 14 18 18 O 1.21286 * 120.00304 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99842 * 0.02562 * 17 16 15 20 20 H 1.08996 * 109.09665 * 40.88817 * 19 17 16 21 21 C 1.53340 * 109.05404 * 281.80812 * 19 17 16 22 22 C 1.50673 * 107.87721 * 282.31461 * 21 19 17 23 23 C 1.33065 * 130.80149 * 152.72699 * 22 21 19 24 24 N 1.34736 * 108.03212 * 179.67717 * 23 22 21 25 25 C 1.30821 * 109.54302 * 0.03525 * 24 23 22 26 26 N 1.35046 * 108.33283 * 0.23731 * 25 24 23 27 27 C 1.34488 * 131.35198 * 179.36979 * 26 25 24 28 28 O 1.21493 * 120.62805 * 9.54948 * 27 26 25 29 29 N 1.34830 * 118.66412 * 189.77987 * 27 26 25 30 30 C 1.46928 * 118.73471 * 53.86540 * 16 15 14 31 31 H 1.08997 * 109.47524 * 274.30332 * 1 2 3 32 32 H 1.08990 * 109.47288 * 34.30786 * 1 2 3 33 33 H 1.09005 * 109.46933 * 154.31043 * 1 2 3 34 34 H 0.97000 * 119.99965 * 180.02562 * 6 5 3 35 35 H 1.09003 * 109.46492 * 58.66012 * 13 11 2 36 36 H 1.08999 * 109.45348 * 298.69634 * 13 11 2 37 37 H 1.08995 * 109.49645 * 301.41429 * 14 13 11 38 38 H 1.09000 * 109.52520 * 181.33154 * 14 13 11 39 39 H 1.09000 * 109.58251 * 185.57922 * 15 14 13 40 40 H 1.08993 * 109.58663 * 65.15043 * 15 14 13 41 41 H 1.08995 * 109.77638 * 41.91210 * 21 19 17 42 42 H 1.08996 * 109.77503 * 162.72241 * 21 19 17 43 43 H 1.07998 * 125.97816 * 359.67973 * 23 22 21 44 44 H 1.08000 * 125.83471 * 180.20760 * 25 24 23 45 45 H 0.96994 * 118.55428 * 191.54685 * 29 27 26 46 46 H 1.09001 * 109.58730 * 65.92562 * 30 16 15 47 47 H 1.08999 * 109.58724 * 186.34798 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1703 1.2201 -0.3513 5 6 1.5319 2.3440 0.4515 6 7 0.3899 2.2701 1.1020 7 14 2.3210 4.0075 0.1358 8 1 3.5913 3.8192 -0.6097 9 1 1.3967 4.8499 -0.6649 10 1 2.6024 4.6758 1.4318 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8283 -2.0723 -1.2484 14 6 2.6177 -3.3833 -1.2655 15 6 2.2496 -4.2124 -0.0310 16 7 2.4654 -3.3938 1.1699 17 6 3.2357 -3.8451 2.1794 18 8 3.4057 -3.1600 3.1656 19 6 3.8858 -5.2012 2.0828 20 1 4.2612 -5.3454 1.0697 21 6 2.8405 -6.2805 2.3890 22 6 2.6469 -6.3263 3.8825 23 6 1.5956 -6.6909 4.6122 24 7 1.9247 -6.5604 5.9122 25 6 3.1538 -6.1233 6.0107 26 7 3.6463 -5.9560 4.7644 27 6 4.8438 -5.5216 4.3331 28 8 5.7617 -5.3615 5.1128 29 7 5.0032 -5.2631 3.0195 30 6 1.8202 -2.0762 1.2519 31 1 -0.3634 0.0771 1.0247 32 1 -0.3633 0.8488 -0.5792 33 1 -0.3633 -0.9261 -0.4455 34 1 -0.0419 3.0795 1.4171 35 1 2.0698 -1.4914 -2.1386 36 1 0.7606 -2.2914 -1.2366 37 1 3.6855 -3.1652 -1.2522 38 1 2.3722 -3.9446 -2.1671 39 1 2.8802 -5.1003 0.0140 40 1 1.2021 -4.5080 -0.0884 41 1 1.8981 -6.0298 1.9023 42 1 3.1943 -7.2481 2.0331 43 1 0.6450 -7.0316 4.2294 44 1 3.6839 -5.9289 6.9314 45 1 5.9003 -5.1156 2.6815 46 1 0.7384 -2.2013 1.2970 47 1 2.1673 -1.5543 2.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027505197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:03 Heat of formation + Delta-G solvation = 19.963313 kcal Electronic energy + Delta-G solvation = -31916.263818 eV Core-core repulsion = 27714.742368 eV Total energy + Delta-G solvation = -4201.521449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.18602 -41.53138 -40.45218 -39.05251 -37.29290 -36.82298 -34.33864 -33.98723 -32.94410 -32.76011 -30.87873 -29.60103 -28.07664 -26.78963 -25.56349 -25.38128 -24.74833 -23.03956 -22.59199 -21.71825 -20.46692 -19.99689 -19.18168 -18.76937 -18.53837 -18.11383 -17.50893 -17.07521 -17.02672 -16.33466 -16.17707 -15.75718 -15.62195 -15.37020 -15.19464 -15.03823 -14.92564 -14.66318 -14.40753 -14.11844 -13.91672 -13.79888 -13.64309 -13.40650 -13.28559 -12.93304 -12.86196 -12.50419 -12.23062 -12.16917 -12.07163 -12.03739 -11.74376 -11.67038 -11.46195 -11.37289 -11.36632 -11.34319 -10.68454 -10.36726 -9.72204 -9.64329 -8.78893 -7.87429 -5.35166 0.02228 1.04202 1.40860 1.42619 1.49855 1.52500 1.66909 1.85819 2.05357 2.22038 2.47331 3.26243 3.27134 3.37936 3.42385 3.60898 3.64653 3.79118 3.94982 4.03367 4.11122 4.19673 4.24151 4.28765 4.41274 4.49133 4.65136 4.68908 4.72158 4.81268 4.85075 4.91334 4.96838 5.08407 5.23096 5.26947 5.29866 5.45230 5.47596 5.50661 5.57663 5.60477 5.61467 5.71260 5.93640 6.28906 6.40977 6.61537 6.82704 7.09046 7.12074 7.84587 8.25291 9.15173 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.002971 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.812893 B = 9421.044605 C = 9929.772200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.067 0.933 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.266 1.266 9 H -0.286 1.286 10 H -0.297 1.297 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.125 4.125 14 C -0.124 4.124 15 C 0.093 3.907 16 N -0.594 5.594 17 C 0.482 3.518 18 O -0.593 6.593 19 C 0.126 3.874 20 H 0.191 0.809 21 C -0.049 4.049 22 C -0.037 4.037 23 C -0.007 4.007 24 N -0.504 5.504 25 C 0.230 3.770 26 N -0.464 5.464 27 C 0.729 3.271 28 O -0.571 6.571 29 N -0.692 5.692 30 C 0.116 3.884 31 H -0.006 1.006 32 H 0.016 0.984 33 H 0.040 0.960 34 H 0.247 0.753 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.209 0.791 44 H 0.227 0.773 45 H 0.435 0.565 46 H 0.060 0.940 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -26.247 -7.149 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.794 3.206 8 H -0.190 1.190 9 H -0.213 1.213 10 H -0.225 1.225 11 C 0.059 3.941 12 H 0.061 0.939 13 C -0.164 4.164 14 C -0.162 4.162 15 C -0.027 4.027 16 N -0.327 5.327 17 C 0.269 3.731 18 O -0.473 6.473 19 C 0.018 3.982 20 H 0.208 0.792 21 C -0.087 4.087 22 C -0.143 4.143 23 C -0.148 4.148 24 N -0.222 5.222 25 C -0.052 4.052 26 N -0.169 5.169 27 C 0.430 3.570 28 O -0.446 6.446 29 N -0.348 5.348 30 C -0.009 4.009 31 H 0.013 0.987 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.159 0.841 42 H 0.174 0.826 43 H 0.226 0.774 44 H 0.243 0.757 45 H 0.275 0.725 46 H 0.078 0.922 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.418 -25.824 -5.491 26.768 hybrid contribution 0.936 2.486 0.142 2.661 sum 5.354 -23.338 -5.349 24.534 Atomic orbital electron populations 1.20473 0.82517 0.96331 0.97072 1.44200 1.02229 1.01148 1.85709 1.19572 0.97911 0.86700 1.35243 0.91506 1.25769 0.98531 1.01829 0.98638 1.70247 1.19730 1.27325 1.41160 0.85221 0.78211 0.80196 0.76946 1.19003 1.21264 1.22457 1.20910 0.94668 0.85110 0.93408 0.93950 1.21945 1.00850 0.96777 0.96821 1.21921 1.00216 0.94906 0.99188 1.22412 1.04578 0.93923 0.81808 1.48319 1.47653 1.17796 1.18888 1.21928 0.79108 0.89677 0.82386 1.90769 1.62783 1.60173 1.33534 1.21537 0.88508 0.90821 0.97360 0.79189 1.20971 1.00949 1.00531 0.86279 1.22076 0.89782 1.07625 0.94836 1.22441 1.00103 1.04464 0.87833 1.70750 1.11187 1.18778 1.21504 1.25652 0.91276 0.99504 0.88762 1.43882 1.13134 1.50322 1.09523 1.15822 0.81010 0.76357 0.83837 1.90984 1.41515 1.57021 1.55047 1.44721 1.12262 1.72856 1.04963 1.22017 0.96410 0.83202 0.99320 0.98747 0.96524 0.94182 0.94332 0.92886 0.91703 0.91608 0.86811 0.84822 0.88575 0.84071 0.82603 0.77431 0.75650 0.72468 0.92212 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.70 7.91 127.77 1.01 9.71 16 2 N -0.61 -29.96 2.82 -701.55 -1.98 -31.94 16 3 C -0.26 -14.69 9.60 84.03 0.81 -13.88 16 4 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 5 C -0.05 -3.01 5.11 84.86 0.43 -2.57 16 6 N -0.94 -56.73 10.63 21.65 0.23 -56.50 16 7 Si 0.97 46.14 29.57 68.60 2.03 48.17 16 8 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 9 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 11 C 0.17 6.29 2.76 45.21 0.12 6.41 16 12 H 0.04 1.75 7.86 -2.39 -0.02 1.73 16 13 C -0.12 -3.23 5.13 30.62 0.16 -3.08 16 14 C -0.12 -1.65 6.08 30.67 0.19 -1.46 16 15 C 0.09 0.91 5.48 86.36 0.47 1.38 16 16 N -0.59 -13.65 2.97 -818.07 -2.43 -16.08 16 17 C 0.48 12.09 6.60 87.66 0.58 12.67 16 18 O -0.59 -23.51 15.45 -3.05 -0.05 -23.56 16 19 C 0.13 1.47 2.74 44.47 0.12 1.60 16 20 H 0.19 0.00 6.57 -2.39 -0.02 -0.02 16 21 C -0.05 -0.35 5.56 29.95 0.17 -0.18 16 22 C -0.04 -0.68 6.38 40.37 0.26 -0.43 16 23 C -0.01 -0.15 11.83 83.09 0.98 0.83 16 24 N -0.50 -13.24 11.27 -200.81 -2.26 -15.51 16 25 C 0.23 5.99 12.54 180.17 2.26 8.25 16 26 N -0.46 -11.62 2.85 -477.71 -1.36 -12.98 16 27 C 0.73 19.31 7.93 179.13 1.42 20.73 16 28 O -0.57 -19.02 17.75 -3.69 -0.07 -19.09 16 29 N -0.69 -12.28 4.82 -462.28 -2.23 -14.51 16 30 C 0.12 4.18 5.81 86.51 0.50 4.68 16 31 H -0.01 -0.32 7.41 -2.39 -0.02 -0.33 16 32 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 33 H 0.04 1.56 6.46 -2.38 -0.02 1.54 16 34 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.64 6.71 -2.39 -0.02 1.62 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.13 -0.13 5.23 -2.39 -0.01 -0.14 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.14 0.41 7.16 -2.39 -0.02 0.39 16 42 H 0.16 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.23 4.96 8.06 -2.91 -0.02 4.93 16 45 H 0.43 5.84 8.90 -92.71 -0.83 5.02 16 46 H 0.06 2.17 7.53 -2.39 -0.02 2.15 16 47 H 0.03 1.55 7.00 -2.39 -0.02 1.53 16 Total: -1.00 -93.75 371.90 1.56 -92.19 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.19 Total: 5.12 kcal Atomic # 6 Polarization: 35.19 SS G_CDS: 9.48 Total: 44.68 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -10.03 Total: -147.52 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.11 Total: -42.64 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -93.75 1.56 -92.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.153 kcal (2) G-P(sol) polarization free energy of solvation -93.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds