Wall clock time and date at job start Wed Apr 1 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46492 * 120.00020 * 2 1 4 4 C 1.39056 * 119.99658 * 180.02562 * 2 1 3 5 5 C 1.39301 * 119.90328 * 185.72781 * 4 2 1 6 6 C 1.36532 * 120.26426 * 179.74230 * 5 4 2 7 7 C 1.39854 * 120.08234 * 0.50985 * 6 5 4 8 8 C 1.47373 * 120.09330 * 179.73922 * 7 6 5 9 9 O 1.21615 * 119.99822 * 215.17968 * 8 7 6 10 10 N 1.34778 * 119.99992 * 35.18522 * 8 7 6 11 11 C 1.47167 * 120.70738 * 354.23368 * 10 8 7 12 12 C 1.53885 * 108.03148 * 132.73862 * 11 10 8 13 13 H 1.09010 * 112.09360 * 181.90597 * 12 11 10 14 14 C 1.54548 * 108.36681 * 306.24398 * 12 11 10 15 15 C 1.54827 * 104.73894 * 89.17400 * 14 12 11 16 16 C 1.54546 * 104.74720 * 0.02562 * 15 14 12 17 17 H 1.09001 * 112.68336 * 146.81406 * 16 15 14 18 18 C 1.47160 * 120.71001 * 174.20941 * 10 8 7 19 19 N 1.48303 * 107.20887 * 58.35610 * 12 11 10 20 20 C 1.36935 * 128.07725 * 106.10177 * 19 12 11 21 21 H 1.08007 * 119.99564 * 216.21727 * 20 19 12 22 22 C 1.38811 * 120.00389 * 36.21115 * 20 19 12 23 23 N 1.31612 * 119.99946 * 178.55967 * 22 20 19 24 24 Si 1.86803 * 119.99749 * 358.56184 * 22 20 19 25 25 H 1.48501 * 109.46906 * 273.06126 * 24 22 20 26 26 H 1.48498 * 109.47108 * 33.05831 * 24 22 20 27 27 H 1.48492 * 109.46966 * 153.06192 * 24 22 20 28 28 C 1.40065 * 119.80996 * 359.47174 * 7 6 5 29 29 F 1.35101 * 120.12781 * 180.29671 * 28 7 6 30 30 C 1.38002 * 119.74109 * 0.27035 * 28 7 6 31 31 H 1.08995 * 109.46804 * 269.99909 * 1 2 3 32 32 H 1.08999 * 109.47032 * 29.99984 * 1 2 3 33 33 H 1.08998 * 109.46704 * 149.99985 * 1 2 3 34 34 H 1.09003 * 109.47516 * 185.36017 * 3 2 1 35 35 H 1.09002 * 109.47371 * 305.35963 * 3 2 1 36 36 H 1.08998 * 109.47336 * 65.36443 * 3 2 1 37 37 H 1.07999 * 119.86864 * 359.97438 * 5 4 2 38 38 H 1.08005 * 119.95851 * 180.27836 * 6 5 4 39 39 H 1.09005 * 109.74871 * 13.09994 * 11 10 8 40 40 H 1.09003 * 109.78609 * 252.39100 * 11 10 8 41 41 H 1.08998 * 110.36294 * 208.14067 * 14 12 11 42 42 H 1.08999 * 110.36826 * 330.45803 * 14 12 11 43 43 H 1.09001 * 110.31113 * 241.24583 * 15 14 12 44 44 H 1.09011 * 110.61199 * 118.91178 * 15 14 12 45 45 H 1.08996 * 109.74712 * 346.89889 * 18 10 8 46 46 H 1.08995 * 109.75263 * 107.58085 * 18 10 8 47 47 H 0.97005 * 119.99941 * 179.97438 * 23 22 20 48 48 H 1.07999 * 120.04497 * 180.02562 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2043 -0.0005 5 6 3.5481 -1.2051 0.1200 6 6 4.2376 -2.3835 0.1256 7 6 3.5534 -3.5967 -0.0006 8 6 4.2979 -4.8685 -0.0003 9 8 3.9210 -5.7939 -0.6935 10 7 5.3965 -5.0061 0.7683 11 6 5.9393 -3.8602 1.5153 12 6 6.2192 -4.3207 2.9567 13 1 6.5944 -3.5095 3.5808 14 6 4.9264 -4.9461 3.5278 15 6 5.0102 -6.4436 3.1437 16 6 6.3458 -6.5792 2.3781 17 1 6.8251 -7.5453 2.5368 18 6 6.0786 -6.3054 0.8787 19 7 7.1724 -5.4541 2.8780 20 6 8.5059 -5.4593 3.1891 21 1 9.1942 -6.0529 2.6056 22 6 8.9732 -4.7015 4.2541 23 7 10.2504 -4.7286 4.5707 24 14 7.7891 -3.6433 5.2379 25 1 7.6564 -2.3144 4.5887 26 1 6.4602 -4.3041 5.2891 27 1 8.3095 -3.4703 6.6179 28 6 2.1580 -3.5998 -0.1215 29 9 1.4900 -4.7683 -0.2377 30 6 1.4681 -2.4046 -0.1209 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 3.2653 1.0718 -0.0960 35 1 1.8642 1.8807 -0.8381 36 1 2.0083 1.7975 0.9341 37 1 4.0804 -0.2700 0.2131 38 1 5.3132 -2.3786 0.2238 39 1 5.2127 -3.0477 1.5227 40 1 6.8654 -3.5219 1.0504 41 1 4.8957 -4.8306 4.6112 42 1 4.0493 -4.4871 3.0716 43 1 4.1741 -6.7164 2.4998 44 1 5.0201 -7.0689 4.0366 45 1 5.4429 -7.0909 0.4701 46 1 7.0217 -6.2739 0.3333 47 1 10.5769 -4.1987 5.3147 48 1 0.3921 -2.4012 -0.2135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029338480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:43 Heat of formation + Delta-G solvation = 37.720555 kcal Electronic energy + Delta-G solvation = -32214.673403 eV Core-core repulsion = 27994.002004 eV Total energy + Delta-G solvation = -4220.671399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.84402 -40.66120 -39.55190 -37.96537 -36.27985 -33.97836 -32.48082 -31.64347 -30.96710 -30.11026 -29.91269 -28.49322 -26.74859 -25.46475 -24.43414 -23.57870 -22.50315 -21.83355 -20.37860 -20.05936 -18.87935 -17.90611 -17.42211 -16.86797 -16.43386 -16.15074 -15.90525 -15.80903 -15.47321 -15.19196 -14.98947 -14.77962 -14.36559 -13.88771 -13.68613 -13.47179 -13.27156 -13.12284 -12.99693 -12.88267 -12.82556 -12.56002 -12.47284 -12.26488 -12.08248 -11.94425 -11.76032 -11.26014 -11.22936 -11.07519 -10.74082 -10.54825 -10.25516 -10.02416 -9.91090 -9.85207 -9.39965 -9.37437 -8.96863 -8.71581 -8.30228 -7.66799 -6.91215 -6.01152 -3.50835 0.92072 1.10349 2.63911 2.96434 3.21157 3.31274 3.37058 3.42161 3.69156 4.15563 4.43394 4.43799 4.53896 4.69258 4.77482 4.79345 4.87812 4.94980 5.07199 5.15272 5.18454 5.24686 5.29935 5.33348 5.39266 5.43852 5.57708 5.59409 5.61865 5.67678 5.84107 5.89292 5.93510 6.06338 6.13164 6.16571 6.25233 6.33342 6.35230 6.44655 6.45705 6.51043 6.68340 6.76825 6.81298 7.00579 7.03993 7.77081 7.82848 8.26723 8.52289 8.71814 9.57646 10.20926 11.13451 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003840 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.181119 B = 7290.408187 C = 8576.862999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.085 3.915 4 C 0.262 3.738 5 C -0.218 4.218 6 C -0.021 4.021 7 C -0.222 4.222 8 C 0.561 3.439 9 O -0.548 6.548 10 N -0.585 5.585 11 C 0.071 3.929 12 C 0.121 3.879 13 H 0.077 0.923 14 C -0.128 4.128 15 C -0.124 4.124 16 C 0.139 3.861 17 H 0.090 0.910 18 C 0.104 3.896 19 N -0.598 5.598 20 C -0.243 4.243 21 H 0.088 0.912 22 C 0.031 3.969 23 N -0.912 5.912 24 Si 0.884 3.116 25 H -0.286 1.286 26 H -0.251 1.251 27 H -0.305 1.305 28 C 0.203 3.797 29 F -0.121 7.121 30 C -0.251 4.251 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.136 0.864 38 H 0.153 0.847 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.264 0.736 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.700 11.699 -8.081 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.338 5.338 3 C -0.057 4.057 4 C 0.157 3.843 5 C -0.240 4.240 6 C -0.040 4.040 7 C -0.228 4.228 8 C 0.349 3.651 9 O -0.427 6.427 10 N -0.316 5.316 11 C -0.053 4.053 12 C 0.014 3.986 13 H 0.094 0.906 14 C -0.167 4.167 15 C -0.163 4.163 16 C 0.032 3.968 17 H 0.108 0.892 18 C -0.020 4.020 19 N -0.321 5.321 20 C -0.370 4.370 21 H 0.105 0.895 22 C -0.169 4.169 23 N -0.554 5.554 24 Si 0.717 3.283 25 H -0.215 1.215 26 H -0.176 1.176 27 H -0.233 1.233 28 C 0.182 3.818 29 F -0.099 7.099 30 C -0.275 4.275 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.707 11.390 -8.282 23.415 hybrid contribution -0.591 0.736 0.643 1.142 sum -19.297 12.126 -7.639 24.037 Atomic orbital electron populations 1.21726 0.79115 1.02987 1.01697 1.46275 1.05447 1.03282 1.78810 1.21807 0.98007 0.84494 1.01440 1.17620 0.91056 0.85276 0.90341 1.20472 0.92028 0.99079 1.12445 1.21186 1.01087 0.90238 0.91497 1.19741 0.92392 0.95045 1.15668 1.17889 0.80324 0.86867 0.79976 1.90767 1.68399 1.41678 1.41845 1.47856 1.26865 1.11675 1.45236 1.23268 0.98689 0.88456 0.94876 1.22251 0.90817 0.92833 0.92715 0.90611 1.22689 0.97183 0.96245 1.00550 1.22518 0.97822 0.96185 0.99759 1.22214 0.90721 0.93397 0.90503 0.89241 1.22536 0.96493 0.83995 0.99007 1.45364 1.05424 1.03278 1.78071 1.18569 0.79876 1.29024 1.09581 0.89456 1.25345 0.95884 0.99858 0.95805 1.69729 1.13296 1.42316 1.30050 0.86919 0.82405 0.80146 0.78849 1.21451 1.17623 1.23314 1.17238 0.88431 0.81064 0.95059 1.91556 1.80111 1.45970 1.92280 1.20424 1.00706 0.89826 1.16535 0.92846 0.91219 0.90950 0.89874 0.92195 0.92505 0.84663 0.82975 0.89013 0.90678 0.91569 0.92547 0.92355 0.92096 0.90087 0.91491 0.92569 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.34 59.85 0.62 1.12 16 2 N -0.63 -4.95 3.39 -187.57 -0.64 -5.58 16 3 C 0.09 0.47 10.58 59.84 0.63 1.11 16 4 C 0.26 2.71 6.53 -83.88 -0.55 2.16 16 5 C -0.22 -2.27 9.19 -39.80 -0.37 -2.63 16 6 C -0.02 -0.26 7.35 -39.59 -0.29 -0.55 16 7 C -0.22 -3.40 5.51 -104.89 -0.58 -3.97 16 8 C 0.56 10.17 7.30 -12.54 -0.09 10.07 16 9 O -0.55 -11.54 15.59 5.26 0.08 -11.46 16 10 N -0.58 -10.38 2.28 -172.28 -0.39 -10.78 16 11 C 0.07 1.22 4.34 -3.22 -0.01 1.20 16 12 C 0.12 2.41 2.77 -65.66 -0.18 2.23 16 13 H 0.08 1.62 3.18 -51.92 -0.17 1.45 16 14 C -0.13 -2.34 5.91 -24.96 -0.15 -2.49 16 15 C -0.12 -2.22 6.24 -24.96 -0.16 -2.37 16 16 C 0.14 2.70 4.32 -65.22 -0.28 2.42 16 17 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 18 C 0.10 1.90 5.94 -2.77 -0.02 1.88 16 19 N -0.60 -13.52 2.48 -152.11 -0.38 -13.90 16 20 C -0.24 -6.52 10.82 -15.06 -0.16 -6.69 16 21 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 22 C 0.03 0.87 5.50 -17.43 -0.10 0.77 16 23 N -0.91 -27.21 13.97 55.49 0.78 -26.44 16 24 Si 0.88 21.13 24.66 -169.99 -4.19 16.94 16 25 H -0.29 -6.60 6.97 56.52 0.39 -6.20 16 26 H -0.25 -5.63 4.24 56.52 0.24 -5.39 16 27 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 28 C 0.20 2.97 7.24 -38.98 -0.28 2.68 16 29 F -0.12 -1.99 16.12 2.25 0.04 -1.95 16 30 C -0.25 -2.89 9.21 -39.36 -0.36 -3.25 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.07 0.40 5.96 -51.93 -0.31 0.09 16 34 H 0.08 0.44 5.36 -51.93 -0.28 0.16 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.14 1.07 5.80 -52.49 -0.30 0.77 16 38 H 0.15 1.80 5.34 -52.48 -0.28 1.52 16 39 H 0.09 1.34 3.86 -51.93 -0.20 1.14 16 40 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 41 H 0.07 1.24 6.44 -51.93 -0.33 0.90 16 42 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 43 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 44 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 45 H 0.08 1.46 7.16 -51.93 -0.37 1.09 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.14 1.31 6.00 -52.49 -0.32 0.99 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -33.13 362.11 -8.05 -41.18 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.48 Total: 2.85 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.32 Total: 3.69 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.63 Total: -56.70 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.19 Total: 16.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.13 -8.05 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029338480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.900 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds