Wall clock time and date at job start Wed Apr 1 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46492 * 120.00020 * 2 1 4 4 C 1.39056 * 119.99658 * 180.02562 * 2 1 3 5 5 C 1.39301 * 119.90328 * 185.72781 * 4 2 1 6 6 C 1.36532 * 120.26426 * 179.74230 * 5 4 2 7 7 C 1.39854 * 120.08234 * 0.50985 * 6 5 4 8 8 C 1.47373 * 120.09330 * 179.73922 * 7 6 5 9 9 O 1.21615 * 119.99822 * 215.17968 * 8 7 6 10 10 N 1.34778 * 119.99992 * 35.18522 * 8 7 6 11 11 C 1.47167 * 120.70738 * 354.23368 * 10 8 7 12 12 C 1.53885 * 108.03148 * 132.73862 * 11 10 8 13 13 H 1.09010 * 112.09360 * 181.90597 * 12 11 10 14 14 C 1.54548 * 108.36681 * 306.24398 * 12 11 10 15 15 C 1.54827 * 104.73894 * 89.17400 * 14 12 11 16 16 C 1.54546 * 104.74720 * 0.02562 * 15 14 12 17 17 H 1.09001 * 112.68336 * 146.81406 * 16 15 14 18 18 C 1.47160 * 120.71001 * 174.20941 * 10 8 7 19 19 N 1.48303 * 107.20887 * 58.35610 * 12 11 10 20 20 C 1.36935 * 128.07725 * 106.10177 * 19 12 11 21 21 H 1.08007 * 119.99564 * 216.21727 * 20 19 12 22 22 C 1.38811 * 120.00389 * 36.21115 * 20 19 12 23 23 N 1.31612 * 119.99946 * 178.55967 * 22 20 19 24 24 Si 1.86803 * 119.99749 * 358.56184 * 22 20 19 25 25 H 1.48501 * 109.46906 * 273.06126 * 24 22 20 26 26 H 1.48498 * 109.47108 * 33.05831 * 24 22 20 27 27 H 1.48492 * 109.46966 * 153.06192 * 24 22 20 28 28 C 1.40065 * 119.80996 * 359.47174 * 7 6 5 29 29 F 1.35101 * 120.12781 * 180.29671 * 28 7 6 30 30 C 1.38002 * 119.74109 * 0.27035 * 28 7 6 31 31 H 1.08995 * 109.46804 * 269.99909 * 1 2 3 32 32 H 1.08999 * 109.47032 * 29.99984 * 1 2 3 33 33 H 1.08998 * 109.46704 * 149.99985 * 1 2 3 34 34 H 1.09003 * 109.47516 * 185.36017 * 3 2 1 35 35 H 1.09002 * 109.47371 * 305.35963 * 3 2 1 36 36 H 1.08998 * 109.47336 * 65.36443 * 3 2 1 37 37 H 1.07999 * 119.86864 * 359.97438 * 5 4 2 38 38 H 1.08005 * 119.95851 * 180.27836 * 6 5 4 39 39 H 1.09005 * 109.74871 * 13.09994 * 11 10 8 40 40 H 1.09003 * 109.78609 * 252.39100 * 11 10 8 41 41 H 1.08998 * 110.36294 * 208.14067 * 14 12 11 42 42 H 1.08999 * 110.36826 * 330.45803 * 14 12 11 43 43 H 1.09001 * 110.31113 * 241.24583 * 15 14 12 44 44 H 1.09011 * 110.61199 * 118.91178 * 15 14 12 45 45 H 1.08996 * 109.74712 * 346.89889 * 18 10 8 46 46 H 1.08995 * 109.75263 * 107.58085 * 18 10 8 47 47 H 0.97005 * 119.99941 * 179.97438 * 23 22 20 48 48 H 1.07999 * 120.04497 * 180.02562 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2043 -0.0005 5 6 3.5481 -1.2051 0.1200 6 6 4.2376 -2.3835 0.1256 7 6 3.5534 -3.5967 -0.0006 8 6 4.2979 -4.8685 -0.0003 9 8 3.9210 -5.7939 -0.6935 10 7 5.3965 -5.0061 0.7683 11 6 5.9393 -3.8602 1.5153 12 6 6.2192 -4.3207 2.9567 13 1 6.5944 -3.5095 3.5808 14 6 4.9264 -4.9461 3.5278 15 6 5.0102 -6.4436 3.1437 16 6 6.3458 -6.5792 2.3781 17 1 6.8251 -7.5453 2.5368 18 6 6.0786 -6.3054 0.8787 19 7 7.1724 -5.4541 2.8780 20 6 8.5059 -5.4593 3.1891 21 1 9.1942 -6.0529 2.6056 22 6 8.9732 -4.7015 4.2541 23 7 10.2504 -4.7286 4.5707 24 14 7.7891 -3.6433 5.2379 25 1 7.6564 -2.3144 4.5887 26 1 6.4602 -4.3041 5.2891 27 1 8.3095 -3.4703 6.6179 28 6 2.1580 -3.5998 -0.1215 29 9 1.4900 -4.7683 -0.2377 30 6 1.4681 -2.4046 -0.1209 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 3.2653 1.0718 -0.0960 35 1 1.8642 1.8807 -0.8381 36 1 2.0083 1.7975 0.9341 37 1 4.0804 -0.2700 0.2131 38 1 5.3132 -2.3786 0.2238 39 1 5.2127 -3.0477 1.5227 40 1 6.8654 -3.5219 1.0504 41 1 4.8957 -4.8306 4.6112 42 1 4.0493 -4.4871 3.0716 43 1 4.1741 -6.7164 2.4998 44 1 5.0201 -7.0689 4.0366 45 1 5.4429 -7.0909 0.4701 46 1 7.0217 -6.2739 0.3333 47 1 10.5769 -4.1987 5.3147 48 1 0.3921 -2.4012 -0.2135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029338480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:42 Heat of formation + Delta-G solvation = 17.522371 kcal Electronic energy + Delta-G solvation = -32215.549262 eV Core-core repulsion = 27994.002004 eV Total energy + Delta-G solvation = -4221.547258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.95834 -41.98363 -40.54675 -39.37724 -37.12159 -35.53555 -34.35987 -32.91704 -31.96837 -31.72860 -31.13360 -29.01853 -28.13702 -26.51089 -25.81362 -25.25449 -23.46600 -22.85994 -21.82794 -21.38780 -20.45744 -19.16105 -18.53541 -18.13038 -17.72292 -17.60768 -17.13931 -16.84284 -16.56250 -16.43426 -15.93802 -15.73802 -15.43912 -15.28813 -15.05270 -14.97386 -14.85175 -14.80106 -14.09405 -13.92263 -13.73871 -13.45758 -13.36255 -13.34213 -13.22712 -13.03222 -12.97593 -12.91361 -12.79280 -12.38262 -12.18957 -12.01420 -11.75647 -11.61987 -11.41937 -11.13387 -11.02184 -10.71326 -10.67624 -9.97515 -9.79444 -8.77516 -8.39453 -8.13517 -5.61548 -0.07240 0.20603 1.31560 1.44640 1.53809 1.73127 1.98611 2.06072 2.44263 2.63878 3.11126 3.14364 3.22828 3.46858 3.62285 3.85896 3.90188 3.95372 4.06320 4.08216 4.14979 4.22331 4.27795 4.38746 4.44054 4.46800 4.53453 4.57022 4.63820 4.72492 4.77985 4.81502 4.83672 4.86232 4.89984 4.93861 4.97202 4.98992 5.04892 5.11605 5.20095 5.27091 5.34177 5.52763 5.61145 5.83574 6.15526 6.16958 6.30802 6.45081 6.70854 7.14001 7.48759 8.22676 9.04252 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.003840 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.181119 B = 7290.408187 C = 8576.862999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.076 3.924 4 C 0.270 3.730 5 C -0.209 4.209 6 C -0.023 4.023 7 C -0.251 4.251 8 C 0.561 3.439 9 O -0.586 6.586 10 N -0.586 5.586 11 C 0.079 3.921 12 C 0.112 3.888 13 H 0.069 0.931 14 C -0.123 4.123 15 C -0.116 4.116 16 C 0.136 3.864 17 H 0.085 0.915 18 C 0.111 3.889 19 N -0.615 5.615 20 C -0.230 4.230 21 H 0.047 0.953 22 C -0.028 4.028 23 N -0.963 5.963 24 Si 0.946 3.054 25 H -0.268 1.268 26 H -0.227 1.227 27 H -0.319 1.319 28 C 0.184 3.816 29 F -0.140 7.140 30 C -0.248 4.248 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.126 0.874 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.262 0.738 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.010 15.100 -8.073 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.331 5.331 3 C -0.066 4.066 4 C 0.162 3.838 5 C -0.231 4.231 6 C -0.042 4.042 7 C -0.258 4.258 8 C 0.352 3.648 9 O -0.468 6.468 10 N -0.316 5.316 11 C -0.045 4.045 12 C 0.007 3.993 13 H 0.087 0.913 14 C -0.161 4.161 15 C -0.155 4.155 16 C 0.029 3.971 17 H 0.103 0.897 18 C -0.013 4.013 19 N -0.339 5.339 20 C -0.359 4.359 21 H 0.065 0.935 22 C -0.224 4.224 23 N -0.608 5.608 24 Si 0.776 3.224 25 H -0.195 1.195 26 H -0.151 1.151 27 H -0.249 1.249 28 C 0.162 3.838 29 F -0.119 7.119 30 C -0.272 4.272 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.183 0.817 38 H 0.175 0.825 39 H 0.143 0.857 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.081 14.836 -8.303 27.868 hybrid contribution 0.360 -0.229 0.496 0.654 sum -21.721 14.607 -7.807 27.316 Atomic orbital electron populations 1.21945 0.77787 1.04144 1.02487 1.46629 1.06543 1.03150 1.76747 1.22050 0.98131 0.83549 1.02839 1.17754 0.91297 0.85913 0.88871 1.20759 0.92187 0.99413 1.10738 1.21192 1.01241 0.89979 0.91819 1.19572 0.92609 0.94346 1.19229 1.18362 0.79857 0.87613 0.78934 1.90735 1.69280 1.43428 1.43364 1.47863 1.26964 1.11387 1.45403 1.23265 0.99539 0.88966 0.92712 1.22431 0.90623 0.91785 0.94500 0.91336 1.22664 0.96828 0.96019 1.00614 1.22446 0.96676 0.96501 0.99842 1.22326 0.91171 0.92425 0.91194 0.89740 1.22322 0.96081 0.84943 0.97991 1.45364 1.04536 1.05654 1.78315 1.18350 0.81516 1.27476 1.08573 0.93504 1.26073 0.97395 1.01787 0.97119 1.69893 1.15555 1.44212 1.31127 0.85955 0.81010 0.79248 0.76225 1.19505 1.15112 1.24892 1.17530 0.88450 0.81385 0.96392 1.91503 1.80415 1.47266 1.92679 1.20574 1.01613 0.89134 1.15874 0.92184 0.89053 0.90927 0.89448 0.90535 0.91295 0.81731 0.82545 0.85677 0.91268 0.91423 0.90564 0.91573 0.91408 0.89883 0.92812 0.92865 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.34 127.77 1.32 1.88 16 2 N -0.62 -6.94 3.39 -747.35 -2.53 -9.48 16 3 C 0.08 0.47 10.58 127.77 1.35 1.82 16 4 C 0.27 4.52 6.53 38.45 0.25 4.77 16 5 C -0.21 -3.50 9.19 22.13 0.20 -3.29 16 6 C -0.02 -0.51 7.35 22.26 0.16 -0.35 16 7 C -0.25 -7.30 5.51 -20.04 -0.11 -7.41 16 8 C 0.56 20.09 7.30 86.65 0.63 20.72 16 9 O -0.59 -25.01 15.59 -4.08 -0.06 -25.08 16 10 N -0.59 -20.40 2.28 -817.22 -1.87 -22.27 16 11 C 0.08 2.55 4.34 86.55 0.38 2.93 16 12 C 0.11 4.28 2.77 45.47 0.13 4.41 16 13 H 0.07 2.74 3.18 -2.38 -0.01 2.73 16 14 C -0.12 -4.14 5.91 31.74 0.19 -3.95 16 15 C -0.12 -3.96 6.24 31.74 0.20 -3.76 16 16 C 0.14 5.28 4.32 45.77 0.20 5.48 16 17 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 18 C 0.11 4.12 5.94 86.85 0.52 4.63 16 19 N -0.61 -27.79 2.48 -635.16 -1.57 -29.36 16 20 C -0.23 -12.76 10.82 84.03 0.91 -11.85 16 21 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 22 C -0.03 -1.62 5.50 84.86 0.47 -1.15 16 23 N -0.96 -59.51 13.97 21.65 0.30 -59.20 16 24 Si 0.95 43.38 24.66 68.60 1.69 45.07 16 25 H -0.27 -11.40 6.97 99.48 0.69 -10.71 16 26 H -0.23 -9.41 4.24 99.48 0.42 -8.99 16 27 H -0.32 -15.33 7.11 99.48 0.71 -14.62 16 28 C 0.18 5.10 7.24 22.66 0.16 5.26 16 29 F -0.14 -4.57 16.12 44.97 0.72 -3.85 16 30 C -0.25 -5.03 9.21 22.42 0.21 -4.82 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.29 8.07 -2.39 -0.02 0.27 16 33 H 0.07 0.54 5.96 -2.39 -0.01 0.52 16 34 H 0.09 0.47 5.36 -2.39 -0.01 0.46 16 35 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.17 1.76 5.80 -2.91 -0.02 1.74 16 38 H 0.16 3.26 5.34 -2.91 -0.02 3.25 16 39 H 0.13 3.28 3.86 -2.38 -0.01 3.27 16 40 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 41 H 0.07 2.28 6.44 -2.39 -0.02 2.27 16 42 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 43 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16 44 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.08 3.05 7.16 -2.39 -0.02 3.03 16 46 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 48 H 0.16 2.49 6.00 -2.91 -0.02 2.47 16 Total: -1.00 -74.90 362.11 4.55 -70.35 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.71 Total: 18.50 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 7.16 Total: 15.31 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -5.67 Total: -120.31 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.06 Total: -25.08 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.72 Total: -3.85 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.69 Total: 45.07 kcal Total: -74.90 4.55 -70.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029338480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.874 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds