Wall clock time and date at job start Wed Apr 1 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46890 * 111.00316 * 2 1 4 4 C 1.39197 * 111.00042 * 236.04379 * 2 1 3 5 5 C 1.39146 * 119.93332 * 59.72883 * 4 2 1 6 6 C 1.37650 * 120.09023 * 179.72163 * 5 4 2 7 7 C 1.39774 * 119.97357 * 0.57139 * 6 5 4 8 8 C 1.47518 * 120.06358 * 179.67499 * 7 6 5 9 9 O 1.21600 * 120.00120 * 209.15119 * 8 7 6 10 10 N 1.34775 * 119.99827 * 29.16024 * 8 7 6 11 11 C 1.47165 * 120.70918 * 5.76898 * 10 8 7 12 12 C 1.53891 * 108.02809 * 132.75706 * 11 10 8 13 13 H 1.09006 * 112.09161 * 181.90899 * 12 11 10 14 14 C 1.54547 * 107.83314 * 305.86780 * 12 11 10 15 15 C 1.55855 * 104.09396 * 89.28010 * 14 12 11 16 16 C 1.54543 * 105.00054 * 359.97438 * 15 14 12 17 17 H 1.09007 * 112.18369 * 146.41900 * 16 15 14 18 18 C 1.47165 * 120.70940 * 185.48864 * 10 8 7 19 19 N 1.48309 * 104.35882 * 24.71215 * 16 15 14 20 20 C 1.36938 * 128.07992 * 139.08074 * 19 16 15 21 21 H 1.07995 * 120.00074 * 196.33361 * 20 19 16 22 22 C 1.38812 * 119.99828 * 16.32911 * 20 19 16 23 23 N 1.31619 * 119.99977 * 8.67122 * 22 20 19 24 24 Si 1.86799 * 120.00127 * 188.66966 * 22 20 19 25 25 H 1.48495 * 109.47067 * 94.97882 * 24 22 20 26 26 H 1.48504 * 109.47237 * 214.97994 * 24 22 20 27 27 H 1.48500 * 109.46956 * 334.97851 * 24 22 20 28 28 C 1.39807 * 119.87220 * 359.70410 * 7 6 5 29 29 C 1.37795 * 119.90155 * 0.02562 * 28 7 6 30 30 F 1.35102 * 119.98131 * 179.97438 * 29 28 7 31 31 H 1.09000 * 109.47350 * 183.95544 * 1 2 3 32 32 H 1.09004 * 109.46675 * 63.95720 * 1 2 3 33 33 H 1.08999 * 109.47302 * 303.95609 * 1 2 3 34 34 H 1.09005 * 109.46973 * 56.04599 * 3 2 1 35 35 H 1.09001 * 109.47380 * 176.04420 * 3 2 1 36 36 H 1.08998 * 109.47219 * 296.04835 * 3 2 1 37 37 H 1.07996 * 119.95308 * 359.97438 * 5 4 2 38 38 H 1.08002 * 120.01247 * 180.25489 * 6 5 4 39 39 H 1.09001 * 109.74590 * 252.38796 * 11 10 8 40 40 H 1.08994 * 109.75084 * 13.12570 * 11 10 8 41 41 H 1.08994 * 110.36268 * 207.91979 * 14 12 11 42 42 H 1.09000 * 110.35749 * 330.23116 * 14 12 11 43 43 H 1.09005 * 110.28415 * 241.09824 * 15 14 12 44 44 H 1.09001 * 110.29897 * 118.88093 * 15 14 12 45 45 H 1.09001 * 109.74770 * 346.87089 * 18 10 8 46 46 H 1.09003 * 109.75028 * 107.61100 * 18 10 8 47 47 H 0.97002 * 120.00266 * 179.97438 * 23 22 20 48 48 H 1.08000 * 120.04818 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9679 -0.7259 -1.0779 5 6 1.6492 -0.3458 -2.3780 6 6 2.1454 -1.0578 -3.4464 7 6 2.9607 -2.1713 -3.2253 8 6 3.4877 -2.9401 -4.3687 9 8 3.7198 -4.1276 -4.2478 10 7 3.7121 -2.3262 -5.5474 11 6 3.5578 -0.8685 -5.6769 12 6 4.7947 -0.3220 -6.4115 13 1 4.7644 0.7628 -6.5143 14 6 6.0494 -0.8008 -5.6468 15 6 6.3906 -2.1743 -6.2996 16 6 5.3103 -2.3806 -7.3853 17 1 5.6962 -2.9145 -8.2537 18 6 4.1227 -3.0986 -6.7309 19 7 4.8631 -1.0078 -7.7246 20 6 4.5798 -0.4935 -8.9617 21 1 4.5205 0.5758 -9.1013 22 6 4.3689 -1.3465 -10.0363 23 7 4.2715 -2.6439 -9.8374 24 14 4.2234 -0.6530 -11.7647 25 1 5.5475 -0.7108 -12.4343 26 1 3.2418 -1.4548 -12.5388 27 1 3.7650 0.7577 -11.6951 28 6 3.2754 -2.5555 -1.9184 29 6 2.7804 -1.8356 -0.8528 30 9 3.0830 -2.2058 0.4108 31 1 -0.3634 -1.0252 0.0709 32 1 -0.3633 0.4512 -0.9234 33 1 -0.3634 0.5740 0.8524 34 1 1.5898 1.9162 0.8525 35 1 3.0828 1.3431 0.0709 36 1 1.7044 1.8723 -0.9233 37 1 1.0150 0.5115 -2.5490 38 1 1.9006 -0.7592 -4.4551 39 1 2.6590 -0.6428 -6.2507 40 1 3.4873 -0.4162 -4.6877 41 1 6.8698 -0.0968 -5.7856 42 1 5.8251 -0.9191 -4.5867 43 1 6.3376 -2.9697 -5.5561 44 1 7.3818 -2.1422 -6.7518 45 1 4.4212 -4.1028 -6.4299 46 1 3.2955 -3.1559 -7.4385 47 1 4.1237 -3.2400 -10.5883 48 1 3.9048 -3.4157 -1.7443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029599349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:56 Heat of formation + Delta-G solvation = 17.713288 kcal Electronic energy + Delta-G solvation = -31884.151695 eV Core-core repulsion = 27662.612716 eV Total energy + Delta-G solvation = -4221.538979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.84258 -40.67807 -39.49714 -37.93181 -36.47049 -33.95363 -32.42625 -31.22295 -30.75987 -29.88399 -29.24304 -27.94928 -26.60635 -25.24120 -24.16028 -23.63706 -22.73305 -21.85140 -20.17139 -19.75317 -18.94509 -17.83874 -17.07436 -16.77817 -16.57560 -15.93028 -15.51012 -15.46243 -15.20380 -14.92789 -14.73493 -14.56608 -14.30329 -13.87547 -13.72835 -13.61994 -13.13643 -12.98502 -12.85579 -12.80500 -12.64279 -12.18589 -12.10590 -12.02996 -11.85829 -11.66492 -11.61716 -11.44094 -11.07653 -10.91231 -10.83834 -10.34989 -10.08814 -9.94205 -9.79065 -9.61454 -9.43953 -9.16405 -8.91775 -8.83332 -8.68993 -8.13910 -6.89662 -5.90400 -3.26725 0.58595 1.01350 2.84091 3.31351 3.34100 3.37648 3.39478 3.44504 3.66550 4.14514 4.35873 4.56666 4.63418 4.75572 4.87662 4.96127 5.01918 5.11970 5.14734 5.21391 5.27550 5.39119 5.50307 5.52832 5.54046 5.62075 5.67597 5.69870 5.75766 5.81565 5.89515 5.98055 6.09147 6.12148 6.26557 6.34792 6.41414 6.45747 6.46860 6.57951 6.64741 6.74566 6.81071 6.91058 6.98665 7.23446 7.44144 7.63601 7.95040 8.07792 8.54605 8.99252 9.61413 10.38089 11.22661 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.002993 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.346982 B = 9351.982759 C = 9949.308926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.510 5.510 3 C 0.028 3.972 4 C 0.066 3.934 5 C -0.131 4.131 6 C -0.095 4.095 7 C -0.092 4.092 8 C 0.547 3.453 9 O -0.549 6.549 10 N -0.580 5.580 11 C 0.078 3.922 12 C 0.133 3.867 13 H 0.078 0.922 14 C -0.124 4.124 15 C -0.137 4.137 16 C 0.169 3.831 17 H 0.118 0.882 18 C 0.111 3.889 19 N -0.583 5.583 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.001 4.001 23 N -0.912 5.912 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.097 4.097 29 C 0.115 3.885 30 F -0.127 7.127 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.256 0.744 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 6.884 16.707 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.231 5.231 3 C -0.119 4.119 4 C -0.029 4.029 5 C -0.151 4.151 6 C -0.114 4.114 7 C -0.095 4.095 8 C 0.334 3.666 9 O -0.429 6.429 10 N -0.310 5.310 11 C -0.046 4.046 12 C 0.024 3.976 13 H 0.096 0.904 14 C -0.164 4.164 15 C -0.176 4.176 16 C 0.061 3.939 17 H 0.136 0.864 18 C -0.011 4.011 19 N -0.304 5.304 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.557 5.557 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.118 4.118 29 C 0.095 3.905 30 F -0.105 7.105 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.670 5.989 16.936 18.561 hybrid contribution -0.444 0.716 -1.379 1.616 sum -5.114 6.705 15.557 17.696 Atomic orbital electron populations 1.22490 0.85323 1.02983 1.01135 1.59357 1.08878 1.14525 1.40300 1.22484 1.01274 0.86958 1.01152 1.18861 0.98786 0.95271 0.89997 1.21432 1.00883 1.01006 0.91745 1.21772 0.95754 0.93428 1.00431 1.19944 0.99656 0.96433 0.93499 1.18068 0.79049 0.86920 0.82548 1.90760 1.53534 1.15338 1.83295 1.48113 1.64886 1.08310 1.09715 1.23147 1.01042 0.80239 1.00220 1.21959 0.91861 0.96389 0.87386 0.90374 1.22746 0.98209 0.97508 0.97901 1.22930 0.99831 0.96145 0.98722 1.21778 0.89784 0.87511 0.94799 0.86406 1.22417 1.00470 0.94085 0.84161 1.45161 1.76792 1.08320 1.00162 1.18997 1.41761 0.91501 0.83461 0.90581 1.24862 1.00896 0.95662 0.98444 1.69837 1.54118 1.01714 1.30070 0.86107 0.77448 0.77936 0.84238 1.21582 1.21722 1.20608 1.21145 1.00299 1.00066 0.90247 1.17317 0.98884 0.94948 0.79400 1.91506 1.91380 1.90693 1.36940 0.90984 0.94680 0.90626 0.90640 0.90938 0.94651 0.84839 0.83312 0.91249 0.90223 0.92557 0.92919 0.92741 0.92788 0.91042 0.89852 0.93409 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.33 60.07 0.56 0.77 16 2 N -0.51 -5.07 4.80 -186.79 -0.90 -5.96 16 3 C 0.03 0.22 9.38 60.06 0.56 0.78 16 4 C 0.07 0.75 4.73 -83.76 -0.40 0.36 16 5 C -0.13 -1.35 8.53 -39.46 -0.34 -1.69 16 6 C -0.09 -1.15 7.41 -39.22 -0.29 -1.44 16 7 C -0.09 -1.34 5.44 -104.95 -0.57 -1.91 16 8 C 0.55 9.88 7.45 -12.48 -0.09 9.79 16 9 O -0.55 -11.61 16.15 5.28 0.09 -11.52 16 10 N -0.58 -10.64 2.27 -173.04 -0.39 -11.03 16 11 C 0.08 1.28 4.07 -3.22 -0.01 1.26 16 12 C 0.13 2.42 4.27 -65.66 -0.28 2.14 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 14 C -0.12 -2.12 6.31 -24.39 -0.15 -2.28 16 15 C -0.14 -2.61 6.22 -24.40 -0.15 -2.76 16 16 C 0.17 3.71 3.10 -65.90 -0.20 3.51 16 17 H 0.12 2.96 6.44 -51.92 -0.33 2.63 16 18 C 0.11 2.37 5.78 -3.45 -0.02 2.35 16 19 N -0.58 -13.25 2.81 -152.86 -0.43 -13.67 16 20 C -0.23 -5.77 10.37 -15.06 -0.16 -5.92 16 21 H 0.08 1.87 7.84 -52.49 -0.41 1.46 16 22 C 0.00 -0.03 5.42 -17.43 -0.09 -0.12 16 23 N -0.91 -24.38 10.37 55.49 0.58 -23.80 16 24 Si 0.91 20.68 29.56 -169.99 -5.03 15.65 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.10 -1.35 9.56 -39.16 -0.37 -1.72 16 29 C 0.11 1.49 7.30 -39.32 -0.29 1.20 16 30 F -0.13 -1.73 17.07 2.25 0.04 -1.69 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.24 7.08 -51.93 -0.37 -0.12 16 33 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.25 7.34 -51.93 -0.38 -0.13 16 37 H 0.13 1.09 6.99 -52.49 -0.37 0.72 16 38 H 0.15 1.74 5.24 -52.49 -0.28 1.47 16 39 H 0.07 1.18 7.76 -51.93 -0.40 0.77 16 40 H 0.08 1.07 4.61 -51.93 -0.24 0.83 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.84 7.84 -51.93 -0.41 0.43 16 43 H 0.05 1.03 7.83 -51.93 -0.41 0.62 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.07 1.55 7.08 -51.93 -0.37 1.18 16 46 H 0.08 2.01 7.73 -51.93 -0.40 1.61 16 47 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 48 H 0.15 2.05 7.91 -52.49 -0.41 1.63 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -28.96 375.96 -9.55 -38.51 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.87 Total: 3.55 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.30 Total: 4.31 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -1.14 Total: -54.47 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.96 -9.55 -38.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029599349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.221 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds