Wall clock time and date at job start Wed Apr 1 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46890 * 111.00316 * 2 1 4 4 C 1.39197 * 111.00042 * 236.04379 * 2 1 3 5 5 C 1.39146 * 119.93332 * 59.72883 * 4 2 1 6 6 C 1.37650 * 120.09023 * 179.72163 * 5 4 2 7 7 C 1.39774 * 119.97357 * 0.57139 * 6 5 4 8 8 C 1.47518 * 120.06358 * 179.67499 * 7 6 5 9 9 O 1.21600 * 120.00120 * 209.15119 * 8 7 6 10 10 N 1.34775 * 119.99827 * 29.16024 * 8 7 6 11 11 C 1.47165 * 120.70918 * 5.76898 * 10 8 7 12 12 C 1.53891 * 108.02809 * 132.75706 * 11 10 8 13 13 H 1.09006 * 112.09161 * 181.90899 * 12 11 10 14 14 C 1.54547 * 107.83314 * 305.86780 * 12 11 10 15 15 C 1.55855 * 104.09396 * 89.28010 * 14 12 11 16 16 C 1.54543 * 105.00054 * 359.97438 * 15 14 12 17 17 H 1.09007 * 112.18369 * 146.41900 * 16 15 14 18 18 C 1.47165 * 120.70940 * 185.48864 * 10 8 7 19 19 N 1.48309 * 104.35882 * 24.71215 * 16 15 14 20 20 C 1.36938 * 128.07992 * 139.08074 * 19 16 15 21 21 H 1.07995 * 120.00074 * 196.33361 * 20 19 16 22 22 C 1.38812 * 119.99828 * 16.32911 * 20 19 16 23 23 N 1.31619 * 119.99977 * 8.67122 * 22 20 19 24 24 Si 1.86799 * 120.00127 * 188.66966 * 22 20 19 25 25 H 1.48495 * 109.47067 * 94.97882 * 24 22 20 26 26 H 1.48504 * 109.47237 * 214.97994 * 24 22 20 27 27 H 1.48500 * 109.46956 * 334.97851 * 24 22 20 28 28 C 1.39807 * 119.87220 * 359.70410 * 7 6 5 29 29 C 1.37795 * 119.90155 * 0.02562 * 28 7 6 30 30 F 1.35102 * 119.98131 * 179.97438 * 29 28 7 31 31 H 1.09000 * 109.47350 * 183.95544 * 1 2 3 32 32 H 1.09004 * 109.46675 * 63.95720 * 1 2 3 33 33 H 1.08999 * 109.47302 * 303.95609 * 1 2 3 34 34 H 1.09005 * 109.46973 * 56.04599 * 3 2 1 35 35 H 1.09001 * 109.47380 * 176.04420 * 3 2 1 36 36 H 1.08998 * 109.47219 * 296.04835 * 3 2 1 37 37 H 1.07996 * 119.95308 * 359.97438 * 5 4 2 38 38 H 1.08002 * 120.01247 * 180.25489 * 6 5 4 39 39 H 1.09001 * 109.74590 * 252.38796 * 11 10 8 40 40 H 1.08994 * 109.75084 * 13.12570 * 11 10 8 41 41 H 1.08994 * 110.36268 * 207.91979 * 14 12 11 42 42 H 1.09000 * 110.35749 * 330.23116 * 14 12 11 43 43 H 1.09005 * 110.28415 * 241.09824 * 15 14 12 44 44 H 1.09001 * 110.29897 * 118.88093 * 15 14 12 45 45 H 1.09001 * 109.74770 * 346.87089 * 18 10 8 46 46 H 1.09003 * 109.75028 * 107.61100 * 18 10 8 47 47 H 0.97002 * 120.00266 * 179.97438 * 23 22 20 48 48 H 1.08000 * 120.04818 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9679 -0.7259 -1.0779 5 6 1.6492 -0.3458 -2.3780 6 6 2.1454 -1.0578 -3.4464 7 6 2.9607 -2.1713 -3.2253 8 6 3.4877 -2.9401 -4.3687 9 8 3.7198 -4.1276 -4.2478 10 7 3.7121 -2.3262 -5.5474 11 6 3.5578 -0.8685 -5.6769 12 6 4.7947 -0.3220 -6.4115 13 1 4.7644 0.7628 -6.5143 14 6 6.0494 -0.8008 -5.6468 15 6 6.3906 -2.1743 -6.2996 16 6 5.3103 -2.3806 -7.3853 17 1 5.6962 -2.9145 -8.2537 18 6 4.1227 -3.0986 -6.7309 19 7 4.8631 -1.0078 -7.7246 20 6 4.5798 -0.4935 -8.9617 21 1 4.5205 0.5758 -9.1013 22 6 4.3689 -1.3465 -10.0363 23 7 4.2715 -2.6439 -9.8374 24 14 4.2234 -0.6530 -11.7647 25 1 5.5475 -0.7108 -12.4343 26 1 3.2418 -1.4548 -12.5388 27 1 3.7650 0.7577 -11.6951 28 6 3.2754 -2.5555 -1.9184 29 6 2.7804 -1.8356 -0.8528 30 9 3.0830 -2.2058 0.4108 31 1 -0.3634 -1.0252 0.0709 32 1 -0.3633 0.4512 -0.9234 33 1 -0.3634 0.5740 0.8524 34 1 1.5898 1.9162 0.8525 35 1 3.0828 1.3431 0.0709 36 1 1.7044 1.8723 -0.9233 37 1 1.0150 0.5115 -2.5490 38 1 1.9006 -0.7592 -4.4551 39 1 2.6590 -0.6428 -6.2507 40 1 3.4873 -0.4162 -4.6877 41 1 6.8698 -0.0968 -5.7856 42 1 5.8251 -0.9191 -4.5867 43 1 6.3376 -2.9697 -5.5561 44 1 7.3818 -2.1422 -6.7518 45 1 4.4212 -4.1028 -6.4299 46 1 3.2955 -3.1559 -7.4385 47 1 4.1237 -3.2400 -10.5883 48 1 3.9048 -3.4157 -1.7443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029599349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:50 Heat of formation + Delta-G solvation = 2.079117 kcal Electronic energy + Delta-G solvation = -31884.829643 eV Core-core repulsion = 27662.612716 eV Total energy + Delta-G solvation = -4222.216928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.86100 -41.99715 -40.58871 -39.35273 -37.46210 -35.54451 -34.18108 -32.64576 -31.77012 -31.16765 -30.84501 -28.50860 -28.06352 -26.38503 -25.69894 -25.14012 -23.75690 -22.87997 -21.47990 -21.29095 -20.54259 -19.19582 -18.19113 -17.99102 -17.71354 -17.04687 -16.91266 -16.78668 -16.60835 -16.31480 -15.68115 -15.58791 -15.40949 -15.26662 -15.13203 -14.80839 -14.69924 -14.44379 -13.99718 -13.65199 -13.58304 -13.51671 -13.33200 -13.23191 -13.01636 -12.90175 -12.79407 -12.67856 -12.61933 -12.48452 -12.41825 -11.94500 -11.81102 -11.52697 -11.50058 -11.15068 -10.97801 -10.66810 -10.14733 -9.75555 -9.70939 -9.58300 -8.69306 -7.84026 -5.20274 -0.43997 0.04882 1.50264 1.52146 1.59704 1.61824 1.96553 2.47873 2.53006 2.69084 3.16467 3.36083 3.41799 3.51030 3.67258 3.88855 4.03642 4.05281 4.12500 4.19338 4.24391 4.31920 4.37931 4.42189 4.44633 4.54715 4.62771 4.64135 4.68157 4.78653 4.84791 4.88300 4.97360 4.98903 5.01876 5.04069 5.07068 5.08505 5.10052 5.13077 5.26218 5.38354 5.48120 5.53386 5.58928 5.81523 5.85402 6.18932 6.23205 6.50650 7.06479 7.09568 7.73993 8.53038 9.27857 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.002993 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.346982 B = 9351.982759 C = 9949.308926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.528 5.528 3 C 0.026 3.974 4 C 0.082 3.918 5 C -0.115 4.115 6 C -0.086 4.086 7 C -0.109 4.109 8 C 0.548 3.452 9 O -0.588 6.588 10 N -0.581 5.581 11 C 0.084 3.916 12 C 0.127 3.873 13 H 0.099 0.901 14 C -0.114 4.114 15 C -0.131 4.131 16 C 0.167 3.833 17 H 0.079 0.921 18 C 0.128 3.872 19 N -0.602 5.602 20 C -0.229 4.229 21 H 0.084 0.916 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.970 3.030 25 H -0.294 1.294 26 H -0.302 1.302 27 H -0.267 1.267 28 C -0.100 4.100 29 C 0.102 3.898 30 F -0.134 7.134 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.246 0.754 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 10.394 18.729 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.250 5.250 3 C -0.120 4.120 4 C -0.014 4.014 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.112 4.112 8 C 0.337 3.663 9 O -0.471 6.471 10 N -0.311 5.311 11 C -0.039 4.039 12 C 0.020 3.980 13 H 0.117 0.883 14 C -0.152 4.152 15 C -0.170 4.170 16 C 0.059 3.941 17 H 0.096 0.904 18 C 0.004 3.996 19 N -0.324 5.324 20 C -0.358 4.358 21 H 0.102 0.898 22 C -0.249 4.249 23 N -0.586 5.586 24 Si 0.800 3.200 25 H -0.222 1.222 26 H -0.229 1.229 27 H -0.191 1.191 28 C -0.120 4.120 29 C 0.082 3.918 30 F -0.113 7.113 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.788 9.554 19.000 22.041 hybrid contribution -0.133 -0.347 -1.868 1.904 sum -5.921 9.207 17.133 20.331 Atomic orbital electron populations 1.22570 0.83858 1.02947 1.02707 1.59394 1.10214 1.15745 1.39656 1.22565 1.00897 0.85815 1.02701 1.19029 0.97076 0.94220 0.91030 1.21688 1.00092 1.01178 0.90470 1.21822 0.94859 0.92407 1.01450 1.19588 1.01879 0.97763 0.92000 1.18586 0.77995 0.86660 0.83015 1.90734 1.55124 1.17281 1.83969 1.48063 1.64965 1.09086 1.08958 1.23223 0.99893 0.78758 1.02029 1.22249 0.93079 0.97320 0.85398 0.88327 1.22695 0.98105 0.96005 0.98439 1.22808 0.98710 0.97701 0.97752 1.21572 0.90768 0.87377 0.94340 0.90351 1.21903 0.98976 0.93968 0.84737 1.45323 1.77084 1.08728 1.01254 1.19324 1.40033 0.91849 0.84605 0.89812 1.25544 1.01915 0.95980 1.01509 1.70031 1.55819 1.02641 1.30074 0.85187 0.76563 0.77754 0.80504 1.22188 1.22885 1.19115 1.21035 1.00510 1.00025 0.90436 1.17426 0.99775 0.95782 0.78823 1.91486 1.91583 1.90906 1.37283 0.91948 0.93279 0.88864 0.88954 0.91705 0.93230 0.81481 0.82510 0.91589 0.86389 0.91086 0.91076 0.93024 0.92734 0.92486 0.93351 0.94452 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.33 127.69 1.19 1.49 16 2 N -0.53 -8.58 4.80 -744.88 -3.58 -12.15 16 3 C 0.03 0.30 9.38 127.69 1.20 1.49 16 4 C 0.08 1.59 4.73 38.46 0.18 1.77 16 5 C -0.11 -1.87 8.53 22.35 0.19 -1.68 16 6 C -0.09 -1.80 7.41 22.50 0.17 -1.63 16 7 C -0.11 -3.02 5.44 -20.08 -0.11 -3.13 16 8 C 0.55 19.78 7.45 86.69 0.65 20.42 16 9 O -0.59 -25.69 16.15 -4.03 -0.07 -25.75 16 10 N -0.58 -21.24 2.27 -819.62 -1.86 -23.09 16 11 C 0.08 2.56 4.07 86.55 0.35 2.92 16 12 C 0.13 4.33 4.27 45.47 0.19 4.53 16 13 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 14 C -0.11 -3.60 6.31 32.11 0.20 -3.39 16 15 C -0.13 -4.96 6.22 32.11 0.20 -4.76 16 16 C 0.17 7.60 3.10 45.31 0.14 7.74 16 17 H 0.08 4.19 6.44 -2.38 -0.02 4.17 16 18 C 0.13 5.72 5.78 86.40 0.50 6.22 16 19 N -0.60 -27.24 2.81 -637.53 -1.79 -29.03 16 20 C -0.23 -11.50 10.37 84.03 0.87 -10.63 16 21 H 0.08 3.99 7.84 -2.91 -0.02 3.97 16 22 C -0.06 -2.89 5.42 84.86 0.46 -2.43 16 23 N -0.94 -52.42 10.37 21.65 0.22 -52.19 16 24 Si 0.97 43.12 29.56 68.60 2.03 45.15 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 C -0.10 -2.68 9.56 22.54 0.22 -2.46 16 29 C 0.10 2.47 7.30 22.44 0.16 2.64 16 30 F -0.13 -3.51 17.07 44.97 0.77 -2.74 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.45 7.08 -2.38 -0.02 0.43 16 33 H 0.09 0.78 8.12 -2.39 -0.02 0.76 16 34 H 0.09 0.75 8.12 -2.38 -0.02 0.73 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.44 7.34 -2.39 -0.02 0.42 16 37 H 0.17 1.69 6.99 -2.91 -0.02 1.67 16 38 H 0.16 3.08 5.24 -2.91 -0.02 3.06 16 39 H 0.07 2.09 7.76 -2.39 -0.02 2.07 16 40 H 0.12 2.72 4.61 -2.39 -0.01 2.70 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 2.02 7.84 -2.39 -0.02 2.00 16 43 H 0.05 1.97 7.83 -2.38 -0.02 1.95 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.65 7.08 -2.39 -0.02 2.63 16 46 H 0.05 2.48 7.73 -2.39 -0.02 2.46 16 47 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 48 H 0.14 3.88 7.91 -2.91 -0.02 3.86 16 Total: -1.00 -65.71 375.96 3.48 -62.23 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.98 Total: 18.48 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 6.76 Total: 19.11 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -7.00 Total: -116.47 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.07 Total: -25.75 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.77 Total: -2.74 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -65.71 3.48 -62.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029599349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.309 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds