Wall clock time and date at job start Wed Apr 1 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00041 * 2 1 4 4 O 1.21283 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99662 * 359.97438 * 3 2 1 6 6 H 1.09006 * 110.85735 * 297.66127 * 5 3 2 7 7 C 1.54621 * 110.97308 * 61.45683 * 5 3 2 8 8 C 1.51283 * 104.19567 * 142.91017 * 7 5 3 9 9 O 1.21307 * 124.93814 * 163.71111 * 8 7 5 10 10 N 1.34414 * 110.11549 * 343.75334 * 8 7 5 11 11 C 1.40769 * 124.34509 * 179.56813 * 10 8 7 12 12 C 1.40259 * 126.07527 * 179.97438 * 11 10 8 13 13 N 1.30830 * 108.32760 * 179.97438 * 12 11 10 14 14 N 1.40064 * 108.37581 * 0.02562 * 13 12 11 15 15 H 0.96996 * 126.05602 * 179.97438 * 14 13 12 16 16 C 1.35747 * 126.08281 * 359.68862 * 11 10 8 17 17 C 1.46755 * 111.30245 * 359.58637 * 10 8 7 18 18 C 1.46502 * 119.99898 * 179.97438 * 2 1 3 19 19 H 1.08999 * 110.64132 * 236.49768 * 18 2 1 20 20 C 1.55160 * 110.71551 * 113.35927 * 18 2 1 21 21 C 1.54907 * 101.58268 * 276.95982 * 20 18 2 22 22 N 1.47425 * 104.92936 * 322.94180 * 21 20 18 23 23 C 1.36940 * 125.64908 * 204.15851 * 22 21 20 24 24 H 1.07999 * 119.99993 * 180.02562 * 23 22 21 25 25 C 1.38812 * 119.99632 * 0.02562 * 23 22 21 26 26 N 1.31617 * 120.00329 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99719 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47571 * 90.00036 * 27 25 23 29 29 H 1.48501 * 109.47121 * 210.00298 * 27 25 23 30 30 H 1.48499 * 109.47336 * 329.99824 * 27 25 23 31 31 C 1.47296 * 108.56048 * 24.14951 * 22 21 20 32 32 H 1.08998 * 109.47713 * 264.67238 * 1 2 3 33 33 H 1.09006 * 109.47101 * 24.67275 * 1 2 3 34 34 H 1.09003 * 109.46894 * 144.66639 * 1 2 3 35 35 H 1.08995 * 110.48875 * 261.59163 * 7 5 3 36 36 H 1.09001 * 110.48562 * 24.10351 * 7 5 3 37 37 H 1.07995 * 125.83421 * 359.96324 * 12 11 10 38 38 H 1.08006 * 126.21956 * 0.03424 * 16 11 10 39 39 H 1.09004 * 110.25062 * 258.01762 * 17 10 8 40 40 H 1.09002 * 110.24580 * 136.01724 * 17 10 8 41 41 H 1.08998 * 111.00092 * 158.88886 * 20 18 2 42 42 H 1.08999 * 111.00435 * 35.04027 * 20 18 2 43 43 H 1.09000 * 110.36424 * 81.82825 * 21 20 18 44 44 H 1.08999 * 110.37111 * 204.04183 * 21 20 18 45 45 H 0.97003 * 120.00009 * 179.97438 * 26 25 23 46 46 H 1.08996 * 109.85616 * 239.50627 * 31 22 21 47 47 H 1.08997 * 110.00080 * 118.43512 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7821 2.5717 -0.9030 7 6 0.5107 2.6069 1.2673 8 6 0.6007 4.0738 1.6261 9 8 -0.1522 4.6517 2.3817 10 7 1.6355 4.6438 0.9852 11 6 1.9876 6.0022 1.0963 12 6 3.0579 6.6339 0.4460 13 7 3.0654 7.8946 0.7956 14 7 2.0023 8.1136 1.6809 15 1 1.7717 8.9583 2.0982 16 6 1.3486 6.9349 1.8475 17 6 2.3509 3.6682 0.1544 18 6 2.1975 -1.2688 0.0006 19 1 2.8772 -1.3196 0.8511 20 6 2.9702 -1.4570 -1.3317 21 6 1.8639 -2.0246 -2.2555 22 7 1.0606 -2.9060 -1.3887 23 6 0.2923 -3.9574 -1.8125 24 1 -0.2618 -4.5448 -1.0953 25 6 0.2257 -4.2680 -3.1637 26 7 0.9014 -3.5524 -4.0376 27 14 -0.8229 -5.7018 -3.7419 28 1 -2.1966 -5.2224 -4.0387 29 1 -0.2269 -6.2875 -4.9695 30 1 -0.8785 -6.7354 -2.6771 31 6 1.2236 -2.4658 0.0074 32 1 -0.3634 -0.0954 1.0232 33 1 -0.3634 0.9339 -0.4290 34 1 -0.3633 -0.8384 -0.5944 35 1 -0.5209 2.3298 1.0504 36 1 0.9091 1.9900 2.0728 37 1 3.7564 6.1604 -0.2279 38 1 0.4798 6.7692 2.4674 39 1 3.2680 3.3506 0.6506 40 1 2.5783 4.0982 -0.8210 41 1 3.7848 -2.1714 -1.2132 42 1 3.3409 -0.5029 -1.7065 43 1 1.2477 -1.2166 -2.6500 44 1 2.3068 -2.5959 -3.0712 45 1 0.8551 -3.7698 -4.9819 46 1 1.6380 -3.2774 0.6054 47 1 0.2611 -2.1584 0.4163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033077371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:14 Heat of formation + Delta-G solvation = 62.684707 kcal Electronic energy + Delta-G solvation = -30940.376770 eV Core-core repulsion = 26740.707860 eV Total energy + Delta-G solvation = -4199.668911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -41.85865 -40.79569 -39.57278 -37.52578 -36.44995 -34.77096 -33.39343 -32.03364 -31.60379 -29.55659 -28.91942 -28.10655 -27.45792 -26.71354 -24.56675 -23.58634 -23.01245 -21.51014 -20.54899 -20.01521 -19.66017 -18.69002 -18.39528 -17.43546 -17.02222 -16.64557 -16.54671 -15.63719 -15.56879 -15.14760 -14.84492 -14.77675 -14.73149 -14.22450 -13.95491 -13.85536 -13.60095 -13.37929 -13.04452 -12.85955 -12.83604 -12.61122 -12.14195 -11.83915 -11.71644 -11.68505 -11.48829 -11.33077 -11.03567 -10.95829 -10.75508 -10.64060 -10.29670 -10.23625 -10.13327 -10.00814 -10.00379 -9.71668 -9.50071 -8.71962 -8.37742 -8.02761 -6.92098 -5.71608 -3.14718 1.45385 1.94176 2.21901 2.60949 2.77042 2.80818 3.08412 3.35163 3.40751 3.42671 3.86906 3.99259 4.41684 4.42385 4.47829 4.57690 4.66830 4.84006 5.12298 5.17369 5.19109 5.25253 5.30060 5.32353 5.37836 5.43176 5.45241 5.60092 5.61481 5.70464 5.76591 5.82391 6.03939 6.26969 6.28533 6.45739 6.46221 6.61678 6.67115 6.68664 6.88239 6.93176 7.25011 7.46699 7.52856 7.56304 7.80140 7.80753 8.22131 8.29692 9.14567 9.74952 10.39243 11.31458 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.002200 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.344520 B =12722.800389 C =13009.053733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.588 5.588 3 C 0.524 3.476 4 O -0.536 6.536 5 C -0.122 4.122 6 H 0.122 0.878 7 C -0.141 4.141 8 C 0.519 3.481 9 O -0.525 6.525 10 N -0.534 5.534 11 C 0.010 3.990 12 C 0.044 3.956 13 N -0.278 5.278 14 N -0.474 5.474 15 H 0.445 0.555 16 C 0.041 3.959 17 C 0.119 3.881 18 C 0.134 3.866 19 H 0.078 0.922 20 C -0.151 4.151 21 C 0.154 3.846 22 N -0.602 5.602 23 C -0.225 4.225 24 H 0.078 0.922 25 C -0.009 4.009 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.281 1.281 31 C 0.125 3.875 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.010 0.990 44 H 0.105 0.895 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 18.285 10.404 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.320 5.320 3 C 0.311 3.689 4 O -0.414 6.414 5 C -0.144 4.144 6 H 0.140 0.860 7 C -0.181 4.181 8 C 0.307 3.693 9 O -0.401 6.401 10 N -0.260 5.260 11 C -0.093 4.093 12 C -0.145 4.145 13 N -0.101 5.101 14 N -0.186 5.186 15 H 0.290 0.710 16 C -0.107 4.107 17 C -0.004 4.004 18 C 0.031 3.969 19 H 0.096 0.904 20 C -0.190 4.190 21 C 0.030 3.970 22 N -0.329 5.329 23 C -0.353 4.353 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 C -0.001 4.001 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.206 0.794 38 H 0.208 0.792 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.028 0.972 44 H 0.123 0.877 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.402 19.551 10.469 22.222 hybrid contribution -1.213 -1.187 -0.140 1.703 sum 0.189 18.364 10.329 21.071 Atomic orbital electron populations 1.22072 0.79528 1.04144 1.02040 1.47781 1.07149 1.05555 1.71521 1.19837 0.87637 0.84477 0.76990 1.90704 1.13450 1.87101 1.50144 1.22239 0.97787 0.93719 1.00646 0.86014 1.22417 1.03206 0.94084 0.98381 1.20887 0.79453 0.89429 0.79496 1.90670 1.44133 1.69121 1.36196 1.45225 1.29740 1.05795 1.45286 1.17591 1.00687 0.84396 1.06607 1.23742 0.98417 0.90996 1.01325 1.77284 1.07033 1.17006 1.08768 1.46152 1.23814 1.10317 1.38345 0.71035 1.22540 1.00262 0.85338 1.02580 1.22089 0.95432 0.86526 0.96333 1.22068 0.93770 0.81985 0.99048 0.90379 1.23337 0.99143 1.00806 0.95755 1.21914 0.89316 0.92364 0.93437 1.44596 1.54614 1.33949 0.99754 1.19040 1.20066 1.04657 0.91558 0.90460 1.24794 1.00452 0.99452 0.95798 1.69812 1.44842 1.40772 1.01342 0.86083 0.79583 0.81723 0.78131 1.21636 1.21669 1.20694 1.21689 0.96054 0.92836 0.89532 0.92526 0.91405 0.88590 0.86489 0.86863 0.79396 0.79156 0.88248 0.89001 0.91378 0.91383 0.97199 0.87716 0.93684 0.94748 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 7.78 59.85 0.47 1.23 16 2 N -0.59 -8.19 3.02 -171.83 -0.52 -8.71 16 3 C 0.52 6.87 6.60 -10.98 -0.07 6.80 16 4 O -0.54 -8.59 14.45 5.56 0.08 -8.51 16 5 C -0.12 -1.14 2.56 -90.14 -0.23 -1.37 16 6 H 0.12 0.98 7.58 -51.93 -0.39 0.59 16 7 C -0.14 -1.22 5.15 -26.74 -0.14 -1.36 16 8 C 0.52 5.70 7.98 -10.86 -0.09 5.61 16 9 O -0.52 -7.07 15.64 5.53 0.09 -6.98 16 10 N -0.53 -5.42 3.16 -112.48 -0.36 -5.77 16 11 C 0.01 0.10 6.80 -83.88 -0.57 -0.47 16 12 C 0.04 0.42 11.53 -17.22 -0.20 0.22 16 13 N -0.28 -2.84 12.69 30.70 0.39 -2.45 16 14 N -0.47 -3.87 7.40 30.69 0.23 -3.64 16 15 H 0.44 2.10 8.96 -182.63 -1.64 0.46 16 16 C 0.04 0.39 11.18 -16.68 -0.19 0.21 16 17 C 0.12 1.08 6.24 -3.13 -0.02 1.06 16 18 C 0.13 2.23 3.26 -66.09 -0.22 2.01 16 19 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 20 C -0.15 -2.87 6.49 -24.58 -0.16 -3.03 16 21 C 0.15 3.56 5.87 -2.53 -0.01 3.54 16 22 N -0.60 -14.19 3.27 -169.86 -0.56 -14.74 16 23 C -0.23 -5.87 10.28 -15.06 -0.15 -6.03 16 24 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 25 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 26 N -0.92 -25.78 10.09 55.49 0.56 -25.22 16 27 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 31 C 0.12 2.33 6.08 -2.92 -0.02 2.31 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.63 5.52 -51.93 -0.29 0.34 16 34 H 0.10 1.47 6.27 -51.93 -0.33 1.15 16 35 H 0.12 0.84 7.02 -51.93 -0.36 0.47 16 36 H 0.11 0.98 7.89 -51.93 -0.41 0.57 16 37 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.19 1.76 6.51 -52.48 -0.34 1.42 16 39 H 0.10 1.01 7.06 -51.93 -0.37 0.64 16 40 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.28 6.83 -51.93 -0.35 0.93 16 43 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.11 2.79 5.86 -51.93 -0.30 2.48 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.04 0.62 5.72 -51.93 -0.30 0.32 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -33.28 372.13 -8.78 -42.06 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.59 Total: 1.80 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -1.69 Total: 10.39 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.25 Total: -60.55 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.17 Total: -15.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.28 -8.78 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033077371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.747 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds