Wall clock time and date at job start Wed Apr 1 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00041 * 2 1 4 4 O 1.21283 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99662 * 359.97438 * 3 2 1 6 6 H 1.09006 * 110.85735 * 297.66127 * 5 3 2 7 7 C 1.54621 * 110.97308 * 61.45683 * 5 3 2 8 8 C 1.51283 * 104.19567 * 142.91017 * 7 5 3 9 9 O 1.21307 * 124.93814 * 163.71111 * 8 7 5 10 10 N 1.34414 * 110.11549 * 343.75334 * 8 7 5 11 11 C 1.40769 * 124.34509 * 179.56813 * 10 8 7 12 12 C 1.40259 * 126.07527 * 179.97438 * 11 10 8 13 13 N 1.30830 * 108.32760 * 179.97438 * 12 11 10 14 14 N 1.40064 * 108.37581 * 0.02562 * 13 12 11 15 15 H 0.96996 * 126.05602 * 179.97438 * 14 13 12 16 16 C 1.35747 * 126.08281 * 359.68862 * 11 10 8 17 17 C 1.46755 * 111.30245 * 359.58637 * 10 8 7 18 18 C 1.46502 * 119.99898 * 179.97438 * 2 1 3 19 19 H 1.08999 * 110.64132 * 236.49768 * 18 2 1 20 20 C 1.55160 * 110.71551 * 113.35927 * 18 2 1 21 21 C 1.54907 * 101.58268 * 276.95982 * 20 18 2 22 22 N 1.47425 * 104.92936 * 322.94180 * 21 20 18 23 23 C 1.36940 * 125.64908 * 204.15851 * 22 21 20 24 24 H 1.07999 * 119.99993 * 180.02562 * 23 22 21 25 25 C 1.38812 * 119.99632 * 0.02562 * 23 22 21 26 26 N 1.31617 * 120.00329 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99719 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47571 * 90.00036 * 27 25 23 29 29 H 1.48501 * 109.47121 * 210.00298 * 27 25 23 30 30 H 1.48499 * 109.47336 * 329.99824 * 27 25 23 31 31 C 1.47296 * 108.56048 * 24.14951 * 22 21 20 32 32 H 1.08998 * 109.47713 * 264.67238 * 1 2 3 33 33 H 1.09006 * 109.47101 * 24.67275 * 1 2 3 34 34 H 1.09003 * 109.46894 * 144.66639 * 1 2 3 35 35 H 1.08995 * 110.48875 * 261.59163 * 7 5 3 36 36 H 1.09001 * 110.48562 * 24.10351 * 7 5 3 37 37 H 1.07995 * 125.83421 * 359.96324 * 12 11 10 38 38 H 1.08006 * 126.21956 * 0.03424 * 16 11 10 39 39 H 1.09004 * 110.25062 * 258.01762 * 17 10 8 40 40 H 1.09002 * 110.24580 * 136.01724 * 17 10 8 41 41 H 1.08998 * 111.00092 * 158.88886 * 20 18 2 42 42 H 1.08999 * 111.00435 * 35.04027 * 20 18 2 43 43 H 1.09000 * 110.36424 * 81.82825 * 21 20 18 44 44 H 1.08999 * 110.37111 * 204.04183 * 21 20 18 45 45 H 0.97003 * 120.00009 * 179.97438 * 26 25 23 46 46 H 1.08996 * 109.85616 * 239.50627 * 31 22 21 47 47 H 1.08997 * 110.00080 * 118.43512 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7821 2.5717 -0.9030 7 6 0.5107 2.6069 1.2673 8 6 0.6007 4.0738 1.6261 9 8 -0.1522 4.6517 2.3817 10 7 1.6355 4.6438 0.9852 11 6 1.9876 6.0022 1.0963 12 6 3.0579 6.6339 0.4460 13 7 3.0654 7.8946 0.7956 14 7 2.0023 8.1136 1.6809 15 1 1.7717 8.9583 2.0982 16 6 1.3486 6.9349 1.8475 17 6 2.3509 3.6682 0.1544 18 6 2.1975 -1.2688 0.0006 19 1 2.8772 -1.3196 0.8511 20 6 2.9702 -1.4570 -1.3317 21 6 1.8639 -2.0246 -2.2555 22 7 1.0606 -2.9060 -1.3887 23 6 0.2923 -3.9574 -1.8125 24 1 -0.2618 -4.5448 -1.0953 25 6 0.2257 -4.2680 -3.1637 26 7 0.9014 -3.5524 -4.0376 27 14 -0.8229 -5.7018 -3.7419 28 1 -2.1966 -5.2224 -4.0387 29 1 -0.2269 -6.2875 -4.9695 30 1 -0.8785 -6.7354 -2.6771 31 6 1.2236 -2.4658 0.0074 32 1 -0.3634 -0.0954 1.0232 33 1 -0.3634 0.9339 -0.4290 34 1 -0.3633 -0.8384 -0.5944 35 1 -0.5209 2.3298 1.0504 36 1 0.9091 1.9900 2.0728 37 1 3.7564 6.1604 -0.2279 38 1 0.4798 6.7692 2.4674 39 1 3.2680 3.3506 0.6506 40 1 2.5783 4.0982 -0.8210 41 1 3.7848 -2.1714 -1.2132 42 1 3.3409 -0.5029 -1.7065 43 1 1.2477 -1.2166 -2.6500 44 1 2.3068 -2.5959 -3.0712 45 1 0.8551 -3.7698 -4.9819 46 1 1.6380 -3.2774 0.6054 47 1 0.2611 -2.1584 0.4163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033077371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:11 Heat of formation + Delta-G solvation = 40.127239 kcal Electronic energy + Delta-G solvation = -30941.354936 eV Core-core repulsion = 26740.707860 eV Total energy + Delta-G solvation = -4200.647076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.61428 -41.68549 -40.60379 -38.89819 -37.37466 -36.08998 -34.49253 -33.54437 -32.32979 -31.20273 -29.85574 -28.98315 -28.79994 -27.88783 -26.18664 -24.65847 -23.75884 -22.31572 -22.02860 -21.44617 -20.43088 -19.77158 -19.17690 -18.89753 -18.29233 -17.80151 -17.46671 -16.74981 -16.53084 -16.47373 -16.10011 -15.60569 -15.54120 -15.50525 -15.22784 -14.79696 -14.52470 -14.40627 -14.27863 -14.07626 -13.81092 -13.75107 -13.60564 -13.35672 -12.91240 -12.77864 -12.62333 -12.58522 -12.48510 -12.18862 -12.05884 -12.00085 -11.90664 -11.71855 -11.50079 -11.39018 -11.12863 -10.71900 -10.69922 -10.63427 -9.54519 -8.84200 -8.78111 -7.72687 -5.16637 0.72566 1.17356 1.50714 1.51345 1.51843 1.60296 1.61286 1.97148 2.01391 2.20308 2.53037 3.06945 3.24809 3.38466 3.55179 3.74440 3.75598 3.85627 3.90886 3.96450 4.10324 4.15005 4.31021 4.39440 4.44424 4.47062 4.54732 4.65600 4.67212 4.71312 4.75248 4.80849 4.90938 4.99036 5.07159 5.07936 5.11428 5.17792 5.51074 5.62338 5.68420 5.72739 5.85283 5.94018 6.28248 6.34130 6.47840 6.57483 7.00284 7.14447 7.17217 7.81886 8.45813 9.28841 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.002200 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.344520 B =12722.800389 C =13009.053733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.593 5.593 3 C 0.526 3.474 4 O -0.567 6.567 5 C -0.111 4.111 6 H 0.143 0.857 7 C -0.131 4.131 8 C 0.513 3.487 9 O -0.555 6.555 10 N -0.531 5.531 11 C -0.013 4.013 12 C 0.043 3.957 13 N -0.300 5.300 14 N -0.463 5.463 15 H 0.458 0.542 16 C 0.043 3.957 17 C 0.121 3.879 18 C 0.147 3.853 19 H 0.092 0.908 20 C -0.139 4.139 21 C 0.166 3.834 22 N -0.620 5.620 23 C -0.229 4.229 24 H 0.085 0.915 25 C -0.067 4.067 26 N -0.949 5.949 27 Si 0.976 3.024 28 H -0.287 1.287 29 H -0.300 1.300 30 H -0.270 1.270 31 C 0.124 3.876 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.209 0.791 38 H 0.193 0.807 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.069 0.931 43 H -0.010 1.010 44 H 0.065 0.935 45 H 0.245 0.755 46 H 0.038 0.962 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 18.989 11.692 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.324 5.324 3 C 0.314 3.686 4 O -0.446 6.446 5 C -0.132 4.132 6 H 0.160 0.840 7 C -0.171 4.171 8 C 0.302 3.698 9 O -0.434 6.434 10 N -0.257 5.257 11 C -0.116 4.116 12 C -0.145 4.145 13 N -0.123 5.123 14 N -0.177 5.177 15 H 0.305 0.695 16 C -0.107 4.107 17 C -0.001 4.001 18 C 0.043 3.957 19 H 0.110 0.890 20 C -0.178 4.178 21 C 0.040 3.960 22 N -0.346 5.346 23 C -0.358 4.358 24 H 0.103 0.897 25 C -0.260 4.260 26 N -0.599 5.599 27 Si 0.805 3.195 28 H -0.214 1.214 29 H -0.226 1.226 30 H -0.195 1.195 31 C -0.001 4.001 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.225 0.775 38 H 0.210 0.790 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.008 0.992 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.560 20.286 11.796 23.473 hybrid contribution -0.925 -1.348 -0.484 1.705 sum -0.365 18.938 11.312 22.062 Atomic orbital electron populations 1.22189 0.78041 1.04194 1.03367 1.47821 1.08015 1.04869 1.71716 1.20351 0.87388 0.85142 0.75730 1.90698 1.15000 1.87594 1.51346 1.22167 0.97664 0.91401 1.01967 0.83975 1.22430 1.04266 0.92507 0.97933 1.21255 0.79190 0.90223 0.79090 1.90655 1.45274 1.69871 1.37566 1.45274 1.29481 1.05849 1.45050 1.17848 1.01464 0.84751 1.07520 1.24072 0.98413 0.90727 1.01247 1.77249 1.07913 1.17555 1.09612 1.46195 1.23044 1.10698 1.37727 0.69450 1.22631 1.00156 0.85676 1.02203 1.22102 0.94803 0.86356 0.96884 1.21810 0.93262 0.82797 0.97813 0.88979 1.23137 0.97897 1.00376 0.96409 1.21563 0.89879 0.91185 0.93333 1.44795 1.54325 1.33584 1.01929 1.19416 1.19613 1.04992 0.91789 0.89726 1.25571 1.02159 1.02039 0.96203 1.70068 1.46489 1.42335 1.01014 0.85104 0.77877 0.79174 0.77315 1.21401 1.22649 1.19464 1.21839 0.97594 0.93729 0.86937 0.89717 0.88557 0.92126 0.84350 0.86407 0.77485 0.79026 0.89243 0.87317 0.91639 0.91258 0.99249 0.91680 0.94570 0.94389 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 7.78 127.77 0.99 2.32 16 2 N -0.59 -15.11 3.02 -815.93 -2.46 -17.57 16 3 C 0.53 12.51 6.60 87.66 0.58 13.09 16 4 O -0.57 -17.20 14.45 -3.04 -0.04 -17.24 16 5 C -0.11 -1.74 2.56 -10.48 -0.03 -1.76 16 6 H 0.14 1.74 7.58 -2.38 -0.02 1.72 16 7 C -0.13 -1.86 5.15 30.59 0.16 -1.70 16 8 C 0.51 10.19 7.98 87.90 0.70 10.89 16 9 O -0.56 -14.13 15.64 -3.11 -0.05 -14.18 16 10 N -0.53 -9.75 3.16 -628.37 -1.99 -11.74 16 11 C -0.01 -0.26 6.80 37.62 0.26 0.00 16 12 C 0.04 0.76 11.53 85.33 0.98 1.75 16 13 N -0.30 -5.76 12.69 -56.77 -0.72 -6.48 16 14 N -0.46 -6.99 7.40 -56.81 -0.42 -7.41 16 15 H 0.46 3.77 8.96 -213.35 -1.91 1.86 16 16 C 0.04 0.76 11.18 83.50 0.93 1.70 16 17 C 0.12 1.92 6.24 86.83 0.54 2.46 16 18 C 0.15 4.63 3.26 46.18 0.15 4.78 16 19 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 20 C -0.14 -5.23 6.49 31.99 0.21 -5.02 16 21 C 0.17 7.79 5.87 86.85 0.51 8.30 16 22 N -0.62 -29.18 3.27 -691.31 -2.26 -31.45 16 23 C -0.23 -11.95 10.28 84.03 0.86 -11.08 16 24 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 25 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 26 N -0.95 -54.79 10.09 21.65 0.22 -54.57 16 27 Si 0.98 43.91 29.55 68.60 2.03 45.94 16 28 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 29 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 30 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 31 C 0.12 4.44 6.08 86.68 0.53 4.96 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.43 5.52 -2.38 -0.01 1.41 16 34 H 0.06 1.75 6.27 -2.39 -0.01 1.73 16 35 H 0.14 1.40 7.02 -2.39 -0.02 1.38 16 36 H 0.12 1.64 7.89 -2.39 -0.02 1.62 16 37 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.19 3.38 6.51 -2.91 -0.02 3.36 16 39 H 0.09 1.66 7.06 -2.39 -0.02 1.64 16 40 H 0.11 1.38 8.13 -2.39 -0.02 1.36 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.59 6.83 -2.39 -0.02 2.57 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.07 3.61 5.86 -2.39 -0.01 3.60 16 45 H 0.24 13.86 8.31 -92.71 -0.77 13.09 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 47 H 0.06 1.82 5.72 -2.39 -0.01 1.81 16 Total: -1.00 -73.27 372.13 1.26 -72.01 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.89 Total: 15.20 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 7.84 Total: 27.50 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -7.63 Total: -129.22 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.09 Total: -31.43 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -73.27 1.26 -72.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033077371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.138 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds