Wall clock time and date at job start Wed Apr 1 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21279 * 120.00410 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99541 * 359.97438 * 3 2 1 6 6 H 1.08994 * 110.85784 * 303.78700 * 5 3 2 7 7 C 1.54631 * 110.96960 * 67.62620 * 5 3 2 8 8 C 1.51277 * 104.19957 * 93.31829 * 7 5 3 9 9 O 1.21303 * 124.94530 * 196.21575 * 8 7 5 10 10 N 1.34422 * 110.11678 * 16.25221 * 8 7 5 11 11 C 1.40757 * 124.35079 * 180.43498 * 10 8 7 12 12 C 1.40264 * 126.07859 * 179.67119 * 11 10 8 13 13 N 1.30830 * 108.32913 * 179.81117 * 12 11 10 14 14 N 1.40065 * 108.37599 * 0.43826 * 13 12 11 15 15 H 0.96996 * 126.05861 * 179.74366 * 14 13 12 16 16 C 1.35756 * 126.08390 * 359.96738 * 11 10 8 17 17 C 1.46768 * 111.29893 * 0.40490 * 10 8 7 18 18 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 19 19 H 1.09001 * 110.64094 * 179.30239 * 18 2 1 20 20 C 1.55157 * 110.71944 * 302.44034 * 18 2 1 21 21 C 1.55120 * 101.48508 * 153.73433 * 20 18 2 22 22 N 1.47429 * 104.94517 * 323.22393 * 21 20 18 23 23 C 1.36934 * 125.65171 * 203.97027 * 22 21 20 24 24 H 1.08001 * 119.99784 * 180.02562 * 23 22 21 25 25 C 1.38814 * 119.99719 * 0.03579 * 23 22 21 26 26 N 1.31618 * 120.00216 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99604 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46839 * 60.00858 * 27 25 23 29 29 H 1.48500 * 109.46687 * 179.97438 * 27 25 23 30 30 H 1.48491 * 109.47301 * 300.00127 * 27 25 23 31 31 C 1.47021 * 108.69974 * 24.00062 * 22 21 20 32 32 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 33 33 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 34 34 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 35 35 H 1.09001 * 110.48344 * 211.99903 * 7 5 3 36 36 H 1.08996 * 110.48317 * 334.63816 * 7 5 3 37 37 H 1.07991 * 125.83330 * 359.97438 * 12 11 10 38 38 H 1.07997 * 126.21539 * 0.04177 * 16 11 10 39 39 H 1.09002 * 110.24622 * 223.98618 * 17 10 8 40 40 H 1.09000 * 110.31660 * 102.02124 * 17 10 8 41 41 H 1.09003 * 111.00988 * 271.94168 * 20 18 2 42 42 H 1.09000 * 111.00434 * 35.79481 * 20 18 2 43 43 H 1.09000 * 110.41937 * 204.29919 * 21 20 18 44 44 H 1.08996 * 110.30114 * 82.09125 * 21 20 18 45 45 H 0.97002 * 119.99836 * 180.02562 * 26 25 23 46 46 H 1.08994 * 109.88727 * 239.52675 * 31 22 21 47 47 H 1.09001 * 110.01049 * 118.42923 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.7011 2.5249 -0.8474 7 6 0.6322 2.6770 1.3343 8 6 1.5940 3.4776 2.1841 9 8 1.5121 3.6123 3.3868 10 7 2.5524 4.0189 1.4124 11 6 3.6071 4.8151 1.8972 12 6 4.6281 5.3916 1.1274 13 7 5.4180 6.0613 1.9269 14 7 4.9368 5.9289 3.2356 15 1 5.3310 6.3197 4.0311 16 6 3.8202 5.1570 3.1936 17 6 2.3582 3.6723 -0.0005 18 6 2.1975 -1.2687 0.0006 19 1 3.2729 -1.0915 -0.0119 20 6 1.7978 -2.1328 1.2257 21 6 2.0882 -3.5639 0.7023 22 7 1.7052 -3.5331 -0.7211 23 6 1.3453 -4.6185 -1.4744 24 1 1.0811 -4.4907 -2.5138 25 6 1.3199 -5.8829 -0.9021 26 7 1.6412 -6.0384 0.3648 27 14 0.8282 -7.3634 -1.9296 28 1 1.7655 -7.5059 -3.0726 29 1 0.8817 -8.5877 -1.0909 30 1 -0.5525 -7.1738 -2.4422 31 6 1.7744 -2.1441 -1.1979 32 1 -0.3634 0.0000 1.0277 33 1 -0.3633 -0.8900 -0.5138 34 1 -0.3633 0.8900 -0.5139 35 1 -0.2889 3.2364 1.1706 36 1 0.4180 1.7163 1.8026 37 1 4.7412 5.3005 0.0573 38 1 3.2126 4.8672 4.0381 39 1 3.3081 3.3878 -0.4531 40 1 1.9207 4.5126 -0.5396 41 1 2.4186 -1.8964 2.0899 42 1 0.7405 -2.0113 1.4612 43 1 1.4861 -4.2954 1.2413 44 1 3.1481 -3.7963 0.8049 45 1 1.6237 -6.9221 0.7646 46 1 0.7967 -1.8276 -1.5611 47 1 2.5113 -2.0602 -1.9966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033077374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:22 Heat of formation + Delta-G solvation = 58.760802 kcal Electronic energy + Delta-G solvation = -30965.995226 eV Core-core repulsion = 26766.156162 eV Total energy + Delta-G solvation = -4199.839064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.84038 -40.81181 -39.42779 -37.52056 -36.41814 -34.99203 -33.40246 -32.05992 -31.54471 -29.41922 -28.84990 -28.11926 -27.52800 -26.73574 -24.77605 -23.54127 -22.93441 -21.53683 -20.29317 -20.21563 -19.64002 -18.85385 -18.38391 -17.71072 -17.04217 -16.62762 -16.37699 -15.67016 -15.43193 -15.18015 -14.82442 -14.72386 -14.59716 -14.27801 -13.98698 -13.86790 -13.57791 -13.39934 -13.06191 -12.98362 -12.79966 -12.45047 -12.29706 -11.98108 -11.89754 -11.76037 -11.57565 -11.26854 -11.08609 -10.92660 -10.82314 -10.65535 -10.48808 -10.17883 -10.11853 -9.93486 -9.85898 -9.71166 -9.58454 -8.69954 -8.45768 -7.96295 -6.89632 -5.69665 -3.12549 1.52625 1.99823 2.28954 2.52190 2.81410 2.91205 2.96389 3.37677 3.42193 3.43564 3.87196 3.93663 4.22672 4.43773 4.45992 4.60568 4.69455 4.84578 5.05083 5.14269 5.17326 5.24113 5.31013 5.31860 5.36762 5.39273 5.41618 5.49379 5.54629 5.67199 5.74580 5.80974 5.85748 6.19502 6.27759 6.47588 6.52124 6.52344 6.65302 6.74448 6.89886 6.95228 7.31821 7.43460 7.48997 7.57107 7.80086 7.84669 8.14716 8.30673 9.16518 9.77238 10.41072 11.33874 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.002216 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.574728 B =12629.725581 C =12755.719912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.595 5.595 3 C 0.517 3.483 4 O -0.534 6.534 5 C -0.124 4.124 6 H 0.130 0.870 7 C -0.143 4.143 8 C 0.516 3.484 9 O -0.524 6.524 10 N -0.528 5.528 11 C 0.013 3.987 12 C 0.045 3.955 13 N -0.279 5.279 14 N -0.474 5.474 15 H 0.445 0.555 16 C 0.041 3.959 17 C 0.116 3.884 18 C 0.126 3.874 19 H 0.103 0.897 20 C -0.152 4.152 21 C 0.153 3.847 22 N -0.602 5.602 23 C -0.225 4.225 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.922 5.922 27 Si 0.916 3.084 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 C 0.130 3.870 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.188 0.812 38 H 0.191 0.809 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.014 0.986 45 H 0.254 0.746 46 H 0.029 0.971 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 24.025 1.827 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.327 5.327 3 C 0.303 3.697 4 O -0.411 6.411 5 C -0.146 4.146 6 H 0.147 0.853 7 C -0.183 4.183 8 C 0.305 3.695 9 O -0.400 6.400 10 N -0.254 5.254 11 C -0.089 4.089 12 C -0.143 4.143 13 N -0.102 5.102 14 N -0.186 5.186 15 H 0.289 0.711 16 C -0.108 4.108 17 C -0.007 4.007 18 C 0.023 3.977 19 H 0.121 0.879 20 C -0.191 4.191 21 C 0.028 3.972 22 N -0.328 5.328 23 C -0.353 4.353 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.570 5.570 27 Si 0.746 3.254 28 H -0.212 1.212 29 H -0.215 1.215 30 H -0.211 1.211 31 C 0.003 3.997 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.204 0.796 38 H 0.208 0.792 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.032 0.968 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.979 24.565 2.548 24.716 hybrid contribution -0.840 -1.234 -0.314 1.525 sum -1.818 23.331 2.234 23.508 Atomic orbital electron populations 1.21936 0.79630 1.03782 1.02075 1.47812 1.07082 1.05870 1.71940 1.20127 0.87886 0.84920 0.76738 1.90717 1.13629 1.86927 1.49784 1.22343 0.98383 0.93475 1.00379 0.85250 1.22385 0.98717 1.03015 0.94174 1.20852 0.81862 0.79447 0.87347 1.90672 1.74520 1.61533 1.13297 1.45065 1.23907 1.47647 1.08814 1.17554 0.94519 1.04488 0.92378 1.23682 0.92573 0.97610 1.00460 1.77263 1.22019 1.23106 0.87808 1.46129 1.21984 1.42365 1.08143 0.71064 1.22525 0.91993 0.97697 0.98551 1.22114 1.01675 0.95785 0.81084 1.22285 0.97080 0.81188 0.97182 0.87900 1.23400 1.00723 0.98864 0.96122 1.21973 0.98584 0.91547 0.85059 1.44419 1.79626 1.00883 1.07902 1.19009 1.38237 0.84812 0.93228 0.90488 1.24801 1.01775 0.97501 0.96455 1.69772 1.54554 1.21755 1.10915 0.86137 0.78313 0.82009 0.78925 1.21182 1.21548 1.21124 1.21514 0.97918 0.86341 0.93935 0.92312 0.89534 0.91190 0.86171 0.86810 0.79552 0.79236 0.87833 0.89393 0.92107 0.91714 0.87262 0.96768 0.93572 0.95329 0.95722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 7.93 59.85 0.47 1.16 16 2 N -0.60 -8.02 2.88 -171.83 -0.49 -8.51 16 3 C 0.52 6.69 7.00 -10.98 -0.08 6.61 16 4 O -0.53 -9.03 14.90 5.56 0.08 -8.95 16 5 C -0.12 -0.98 2.55 -90.13 -0.23 -1.21 16 6 H 0.13 0.57 7.25 -51.93 -0.38 0.19 16 7 C -0.14 -1.13 5.78 -26.74 -0.15 -1.28 16 8 C 0.52 6.02 7.98 -10.86 -0.09 5.93 16 9 O -0.52 -7.63 15.64 5.54 0.09 -7.54 16 10 N -0.53 -5.65 3.16 -112.47 -0.36 -6.01 16 11 C 0.01 0.15 6.80 -83.88 -0.57 -0.42 16 12 C 0.05 0.47 11.53 -17.22 -0.20 0.27 16 13 N -0.28 -3.09 12.69 30.70 0.39 -2.70 16 14 N -0.47 -4.36 7.40 30.69 0.23 -4.13 16 15 H 0.44 2.54 8.96 -182.63 -1.64 0.90 16 16 C 0.04 0.43 11.18 -16.68 -0.19 0.25 16 17 C 0.12 0.93 6.26 -3.12 -0.02 0.91 16 18 C 0.13 2.21 3.35 -66.10 -0.22 1.99 16 19 H 0.10 2.00 6.99 -51.93 -0.36 1.64 16 20 C -0.15 -2.83 6.66 -24.47 -0.16 -2.99 16 21 C 0.15 3.66 5.89 -2.41 -0.01 3.64 16 22 N -0.60 -14.96 3.40 -169.94 -0.58 -15.54 16 23 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 24 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 25 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 26 N -0.92 -26.38 10.09 55.49 0.56 -25.82 16 27 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 30 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 31 C 0.13 2.61 6.80 -3.07 -0.02 2.59 16 32 H 0.06 0.53 7.20 -51.93 -0.37 0.16 16 33 H 0.09 1.02 6.26 -51.93 -0.33 0.70 16 34 H 0.07 0.44 6.28 -51.93 -0.33 0.11 16 35 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.99 6.21 -51.93 -0.32 0.67 16 37 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.19 2.00 6.51 -52.49 -0.34 1.66 16 39 H 0.10 0.96 7.01 -51.93 -0.36 0.60 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.14 7.19 -51.93 -0.37 0.76 16 43 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.54 6.12 -51.93 -0.32 0.23 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -36.04 373.23 -8.71 -44.75 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.51 Total: 1.40 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -1.72 Total: 10.84 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -0.25 Total: -62.71 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.17 Total: -16.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.04 -8.71 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033077374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.509 kcal (2) G-P(sol) polarization free energy of solvation -36.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds